Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 2.7e-197 691.8 350 100.0
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 1.7e-106 390.2 257 81.3
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 9.9e-91 337.8 300 61.7
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 6.0e-88 328.6 298 59.7
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 7.8e-88 328.2 300 60.0
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 1.3e-87 327.4 298 59.1
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 6.6e-87 325.1 298 58.7
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.8e-85 319.7 280 62.1
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 3.6e-85 319.3 299 58.5
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 8.1e-85 318.2 299 59.2
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 1.4e-84 317.4 300 59.0
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 5.3e-84 315.5 300 58.0
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.2e-83 314.3 300 58.0
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.0e-83 313.5 306 59.5
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.4e-83 312.8 300 57.3
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 4.5e-83 312.4 305 56.4
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 4.5e-83 312.4 300 57.3
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 9.9e-83 311.2 298 56.0
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 1.3e-82 310.8 300 56.7
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 2.9e-82 309.7 302 56.3
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 1.9e-81 307.0 300 57.7
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 3.2e-81 306.2 299 57.2
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 3.2e-81 306.2 302 55.3
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 1.6e-80 303.9 238 66.0
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 2.1e-80 303.5 237 65.4
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 2.7e-80 303.1 280 61.1
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 3.5e-80 302.8 297 58.2
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.0e-79 301.2 305 54.1
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 1.0e-79 301.2 238 65.5
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 3.0e-79 299.7 301 55.8
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 3.0e-79 299.7 259 61.0
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 3.0e-79 299.7 259 61.0
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 3.9e-79 299.3 300 54.0
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 3.9e-79 299.3 272 58.8
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 5.1e-79 298.9 302 55.6
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 8.7e-79 298.1 263 58.9
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 1.1e-78 297.7 268 59.7
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.5e-78 297.4 245 63.7
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 7.4e-78 295.0 300 55.0
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 1.3e-77 294.3 287 58.5
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.3e-77 294.3 245 64.1
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 2.1e-77 293.5 259 58.3
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 2.1e-77 293.5 263 58.2
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 2.8e-77 293.1 263 57.8
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 3.7e-77 292.7 283 56.9
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 6.2e-77 292.0 269 57.2
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 8.1e-77 291.6 300 54.3
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 8.1e-77 291.6 273 59.3
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.1e-76 291.2 263 58.2
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 1.1e-76 291.2 264 58.7
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 2.4e-76 290.0 278 57.6
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.1e-76 289.7 237 62.0
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 6.9e-76 288.5 299 55.5
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 9.0e-76 288.1 263 56.3
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 9.0e-76 288.1 299 52.2
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 9.9e-75 284.6 237 60.8
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 1.3e-74 284.3 263 57.8
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.7e-74 283.9 236 61.9
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 3.8e-74 282.7 250 57.2
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 3.8e-74 282.7 264 56.1
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 4.9e-74 282.3 236 62.3
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 6.4e-74 282.0 253 59.7
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 1.1e-73 281.2 236 61.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.4e-73 280.8 281 58.0
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 1.9e-73 280.4 278 56.1
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 3.2e-73 279.6 238 61.8
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 9.3e-73 278.1 375 45.6
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 2.7e-72 276.6 300 52.0
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 4.6e-72 275.8 251 57.0
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 6.0e-72 275.4 260 57.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.8e-71 273.9 232 65.1
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 3.3e-70 269.6 237 60.8
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 7.4e-70 268.5 242 57.9
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 1.6e-69 267.3 270 53.7
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 2.1e-69 266.9 240 59.2
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 4.8e-69 265.8 259 56.8
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 7.1e-65 251.9 205 62.4
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.2e-64 251.1 206 61.7
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 2.3e-63 246.9 206 62.6
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 8.2e-61 238.4 208 57.7
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 1.1e-60 238.0 204 63.2
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 5.3e-60 235.7 199 62.3
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 3.4e-59 233.0 234 54.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.9e-57 227.3 244 52.0
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 2.5e-57 226.9 214 58.9
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.2e-56 224.6 264 49.2
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 3.6e-56 223.0 204 59.8
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 3.9e-55 219.5 288 47.6
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 8.8e-55 218.4 243 50.6
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 4.3e-54 216.1 282 45.0
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 1.1e-49 201.4 421 35.2
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 4.7e-48 196.1 169 60.4
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 6.7e-47 192.2 215 51.6
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 8.8e-47 191.8 222 47.3
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.8e-45 186.0 199 54.3
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 4.8e-45 186.0 163 59.5
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.4e-44 184.5 167 59.3
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 1.8e-39 167.5 162 56.2
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 7.7e-27 125.6 163 39.3
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 8.5e-26 122.1 105 59.0
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 1.1e-25 121.7 313 34.2
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 9.4e-25 118.6 194 40.7
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 2.4e-20 104.0 297 31.0
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.1e-17 95.1 81 63.0
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.5e-17 94.0 59 76.3
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.6e-10 68.9 101 43.6
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 1.9e-09 67.8 114 35.1
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 1.2e-08 65.1 244 29.9
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.1e-07 60.5 37 78.4
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.1e-07 60.5 37 78.4
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 5.2e-07 59.7 234 27.8
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 8.9e-07 58.9 249 25.7
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.5e-06 58.2 37 75.7
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 2.6e-06 57.4 241 29.0
MSTRG.13126 Avicennia marina HOM05D002234 ORTHO05D002254 7.5e-06 55.8 254 24.0
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 7.5e-06 55.8 249 26.1
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 9.8e-06 55.5 236 26.3


User provided reference genes

Program Settings