Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.2e-161 573.2 298 100.0
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.8e-125 453.0 308 78.6
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.7e-113 412.5 297 71.7
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 5.6e-111 404.8 297 70.7
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 4.0e-109 398.7 297 69.4
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 7.6e-108 394.4 297 68.7
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 1.7e-107 393.3 297 69.7
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 8.4e-107 391.0 274 75.2
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.1e-106 390.6 297 69.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 4.2e-106 388.7 297 68.7
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.1e-105 386.3 284 69.4
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.7e-105 386.0 297 67.7
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 3.5e-105 385.6 281 70.5
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 6.0e-105 384.8 299 68.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.7e-104 383.3 293 66.9
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.7e-104 383.3 305 67.2
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 2.3e-104 382.9 304 65.1
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 2.3e-104 382.9 304 65.1
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 3.0e-104 382.5 296 66.6
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 3.0e-104 382.5 305 67.2
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.9e-104 382.1 297 66.7
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 8.7e-104 380.9 281 68.7
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.5e-103 380.2 282 69.5
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 2.5e-103 379.4 299 65.2
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 3.3e-103 379.0 281 69.0
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 4.3e-103 378.6 286 68.5
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 7.4e-103 377.9 297 67.7
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.8e-102 375.9 280 69.6
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.8e-102 375.9 280 69.6
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 6.2e-102 374.8 280 69.6
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 8.1e-102 374.4 280 70.0
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 1.4e-101 373.6 280 68.9
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 1.8e-101 373.2 282 68.4
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 2.4e-101 372.9 296 67.6
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 2.4e-101 372.9 280 69.3
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.4e-101 372.9 296 66.6
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 2.4e-101 372.9 293 64.2
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 3.1e-101 372.5 280 69.6
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.1e-101 372.5 280 69.6
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.1e-101 372.5 305 65.6
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 6.9e-101 371.3 297 65.3
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.9e-101 371.3 299 65.2
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 6.9e-101 371.3 280 69.3
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.2e-100 370.5 298 64.1
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.5e-100 370.2 298 64.1
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.0e-100 369.8 300 64.3
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 3.4e-100 369.0 298 66.4
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 5.8e-100 368.2 299 64.5
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 9.9e-100 367.5 283 67.5
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 1.7e-99 366.7 290 65.2
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 2.2e-99 366.3 299 65.2
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 2.9e-99 365.9 297 65.0
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.9e-99 365.9 288 65.3
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 6.4e-99 364.8 291 64.3
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 8.4e-99 364.4 333 58.3
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 8.4e-99 364.4 284 65.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.4e-98 363.6 299 63.5
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 2.4e-98 362.8 297 64.3
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.4e-98 362.8 298 64.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 4.2e-98 362.1 297 64.3
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 4.2e-98 362.1 290 65.2
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 7.1e-98 361.3 284 65.1
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 7.1e-98 361.3 299 62.2
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 9.3e-98 360.9 290 64.8
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-97 360.5 267 70.0
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.6e-97 360.1 297 61.6
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 1.6e-97 360.1 276 67.8
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 3.5e-97 359.0 279 67.7
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 3.5e-97 359.0 298 64.1
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 3.5e-97 359.0 276 67.8
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 3.5e-97 359.0 281 65.8
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 4.6e-97 358.6 276 67.4
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.6e-97 358.6 263 70.7
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 4.6e-97 358.6 284 66.2
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 6.0e-97 358.2 294 64.6
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.0e-97 358.2 263 71.1
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 7.9e-97 357.8 294 62.9
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 1.0e-96 357.5 294 62.9
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.0e-96 357.5 287 64.8
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.0e-96 357.5 284 65.8
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.3e-96 357.1 263 70.7
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 2.3e-96 356.3 280 67.5
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.3e-96 356.3 289 64.4
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 6.7e-96 354.8 284 65.1
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 6.7e-96 354.8 274 67.5
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 8.7e-96 354.4 280 67.1
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.5e-95 353.6 299 63.5
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 3.3e-95 352.4 283 65.0
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 3.3e-95 352.4 284 65.1
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 7.4e-95 351.3 284 65.1
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 7.4e-95 351.3 284 64.4
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 9.6e-95 350.9 290 63.8
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 1.3e-94 350.5 284 63.4
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 2.1e-94 349.7 274 65.3
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 2.8e-94 349.4 327 59.3
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 2.8e-94 349.4 275 65.1
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.8e-94 349.4 274 65.3
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 3.7e-94 349.0 299 62.5
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 4.8e-94 348.6 272 65.8
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 6.2e-94 348.2 272 66.2
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 2.4e-93 346.3 281 64.1
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 4.0e-93 345.5 299 64.9
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 5.3e-93 345.1 280 65.0
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.2e-92 344.0 289 62.6
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-92 344.0 289 62.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 2.0e-92 343.2 289 62.6
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 4.5e-92 342.0 297 61.6
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 1.0e-91 340.9 314 59.9
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-91 339.3 281 66.2
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 4.9e-91 338.6 326 57.4
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.2e-90 335.9 272 63.2
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 9.3e-90 334.3 272 62.9
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 4.6e-89 332.0 284 59.2
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.0e-88 329.3 282 64.2
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.5e-87 327.0 288 58.7
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.5e-87 326.2 281 62.3
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.4e-87 324.7 263 66.9
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.3e-85 318.5 281 60.1
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 9.0e-85 317.8 280 60.4
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 7.6e-84 314.7 285 58.9
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.9e-83 312.8 281 59.1
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 5.0e-83 312.0 272 57.7
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.1e-82 310.8 229 69.4
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 2.5e-82 309.7 279 56.6
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 5.5e-82 308.5 281 56.6
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 5.5e-82 308.5 257 60.7
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.8e-80 303.5 342 52.3
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 6.3e-78 295.0 281 57.7
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 1.5e-76 290.4 211 72.5
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 2.6e-76 289.7 284 51.8
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 2.2e-70 270.0 274 48.9
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 2.4e-69 266.5 280 55.0
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.1e-69 266.2 285 50.5
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 8.8e-64 248.1 204 61.3
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 3.3e-63 246.1 195 61.0
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 6.3e-62 241.9 270 51.9
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.0e-59 234.6 252 51.2
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 3.8e-59 232.6 278 46.0
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 6.5e-59 231.9 200 58.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 2.7e-57 226.5 198 60.6
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 1.1e-55 221.1 162 67.9
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 4.7e-49 199.1 247 39.3
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.4e-45 186.8 162 61.1
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 5.4e-37 159.1 169 55.0
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 6.8e-32 142.1 105 69.5
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 6.8e-32 142.1 105 69.5
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 2.0e-31 140.6 182 46.7
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 2.0e-31 140.6 182 46.7
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 1.5e-26 124.4 93 67.7
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.5e-26 124.4 146 50.7
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.2e-23 114.8 96 58.3
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.0e-23 114.0 78 73.1
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 2.3e-19 100.5 96 58.3
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 8.1e-17 92.0 82 57.3
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 2.9e-14 83.6 101 52.5
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 4.1e-13 79.7 83 47.0
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 3.5e-12 76.6 83 44.6
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 7.8e-12 75.5 50 80.0
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.0e-11 75.1 58 67.2
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 6.6e-11 72.4 68 57.4
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.9e-10 70.9 91 38.5
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 2.5e-10 70.5 68 57.4
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 7.3e-10 68.9 70 45.7
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 9.5e-10 68.6 83 43.4
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.2e-07 61.6 59 52.5
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.9e-07 58.5 68 57.4
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 2.9e-06 57.0 115 33.0
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 2.9e-06 57.0 46 58.7


User provided reference genes

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