Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 9.8e-68 260.0 131 100.0
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.6e-57 226.1 131 87.8
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.8e-53 210.7 131 81.7
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.8e-53 210.7 131 81.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.9e-50 202.6 131 78.6
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 5.4e-50 201.1 131 79.4
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 5.4e-50 201.1 130 78.5
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 5.4e-50 201.1 131 79.4
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.1e-49 199.1 132 78.0
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.7e-49 198.7 129 79.8
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.7e-49 198.7 131 77.9
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 2.7e-49 198.7 131 77.9
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 3.5e-49 198.4 131 77.1
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.5e-49 198.4 131 77.1
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.6e-49 198.0 131 78.6
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.6e-49 198.0 131 77.1
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 7.8e-49 197.2 131 77.9
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.3e-48 196.4 131 79.4
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.0e-48 195.3 132 76.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.9e-48 194.9 135 76.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 3.9e-48 194.9 131 77.1
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.9e-48 194.9 134 75.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.9e-47 192.6 131 77.9
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.9e-47 192.6 131 77.9
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.9e-47 192.6 126 78.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 4.3e-47 191.4 131 77.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.3e-47 191.4 131 76.3
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.6e-47 191.0 131 74.8
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 7.3e-47 190.7 131 76.3
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.6e-46 189.5 131 71.8
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 2.1e-46 189.1 132 72.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 4.7e-46 188.0 131 74.8
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.2e-46 187.6 131 74.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 6.2e-46 187.6 129 74.4
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 6.2e-46 187.6 129 76.7
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 6.2e-46 187.6 129 76.7
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.4e-45 186.4 131 74.0
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.4e-45 186.4 132 75.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.1e-45 185.3 132 74.2
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 3.1e-45 185.3 133 74.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.1e-45 185.3 131 74.0
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.1e-45 185.3 131 75.6
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 3.1e-45 185.3 132 75.8
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 3.1e-45 185.3 133 75.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 4.0e-45 184.9 133 74.4
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.0e-45 184.9 134 74.6
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.2e-45 184.5 131 76.3
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 8.9e-45 183.7 131 72.5
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 8.9e-45 183.7 129 75.2
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 8.9e-45 183.7 129 75.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 8.9e-45 183.7 131 74.8
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 8.9e-45 183.7 134 74.6
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.2e-44 183.3 128 75.0
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.2e-44 183.3 133 74.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.5e-44 183.0 131 74.0
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 73.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.6e-44 182.2 129 73.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 2.6e-44 182.2 129 72.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.6e-44 182.2 132 75.0
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.4e-44 181.8 132 72.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 3.4e-44 181.8 122 75.4
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 4.4e-44 181.4 131 74.0
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 4.4e-44 181.4 131 74.0
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.8e-44 181.0 129 75.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 7.6e-44 180.6 129 74.4
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 7.6e-44 180.6 130 74.6
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 9.9e-44 180.3 130 74.6
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 74.0
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.3e-43 179.9 131 72.5
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.7e-43 179.5 131 71.8
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 2.2e-43 179.1 123 74.0
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 2.2e-43 179.1 123 74.0
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 2.2e-43 179.1 118 77.1
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.9e-43 178.7 123 74.0
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.9e-43 178.7 123 74.0
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.9e-43 178.7 131 71.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 3.8e-43 178.3 121 73.6
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.9e-43 177.9 122 74.6
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 6.4e-43 177.6 121 74.4
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 6.4e-43 177.6 134 73.1
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 8.4e-43 177.2 131 71.8
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 2.4e-42 175.6 133 68.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.4e-42 175.6 131 72.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 3.2e-42 175.3 127 71.7
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 4.2e-42 174.9 131 71.0
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 5.4e-42 174.5 120 73.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 5.4e-42 174.5 129 71.3
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 2.1e-41 172.6 122 72.1
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 2.1e-41 172.6 122 72.1
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 2.1e-41 172.6 122 72.1
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.7e-41 172.2 129 71.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.7e-41 172.2 129 71.3
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.7e-41 172.2 132 72.0
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.7e-41 172.2 132 72.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.6e-41 171.4 130 71.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.0e-41 171.0 118 72.0
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 6.0e-41 171.0 132 70.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.8e-41 170.6 118 73.7
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.8e-41 170.6 129 70.5
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.3e-40 169.9 134 71.6
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 69.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 3.0e-40 168.7 116 75.0
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.5e-39 166.4 95 86.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.5e-39 166.4 116 71.6
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-39 166.4 117 72.6
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 9.6e-39 163.7 137 67.9
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 9.6e-39 163.7 130 69.2
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 1.6e-38 162.9 122 72.1
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.1e-38 162.5 130 69.2
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.1e-38 162.5 118 73.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.8e-38 162.2 130 69.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.8e-38 162.2 130 66.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.8e-38 162.2 129 69.0
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.1e-37 160.2 129 68.2
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.4e-37 159.8 99 82.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 5.3e-37 157.9 95 81.1
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.2e-36 156.8 129 65.9
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.6e-36 155.6 130 67.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.4e-36 155.2 90 85.6
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 4.4e-36 154.8 115 72.2
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.8e-35 151.8 119 67.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.9e-35 151.4 131 67.2
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.4e-34 149.1 109 71.6
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 5.4e-34 147.9 110 70.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 7.1e-34 147.5 118 66.1
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 9.3e-34 147.1 131 65.6
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.1e-33 146.0 118 66.1
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.7e-33 145.6 118 66.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 6.0e-33 144.4 88 80.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 7.9e-33 144.1 114 64.9
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 5.1e-32 141.4 93 77.4
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 6.6e-32 141.0 113 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 5.6e-31 137.9 118 62.7
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.4e-29 132.5 111 65.8
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.1e-29 132.1 84 77.4
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.1e-29 132.1 96 70.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.1e-29 132.1 96 72.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 2.0e-28 129.4 127 59.1
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 9.9e-28 127.1 115 59.1
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 9.3e-26 120.6 129 55.8
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 3.5e-25 118.6 125 58.4
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.0e-25 117.9 69 85.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-24 116.3 96 63.5
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 7.4e-23 110.9 117 55.6
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.8e-22 109.0 92 60.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 4.5e-20 101.7 117 56.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-19 99.8 70 71.4
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 4.9e-19 98.2 91 60.4
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.2e-18 95.5 68 72.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 7.1e-18 94.4 98 51.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-17 93.2 52 90.4
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 3.9e-16 88.6 67 64.2
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.4e-15 84.3 61 68.9
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 7.6e-12 74.3 45 71.1


User provided reference genes

Program Settings