Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 2.8e-299 1031.2 520 100.0
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 7.6e-172 607.8 517 66.2
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.5e-169 599.0 519 66.3
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 9.0e-165 584.3 506 64.8
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 1.0e-163 580.9 523 62.7
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 1.3e-163 580.5 353 87.3
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 4.2e-162 575.5 520 61.7
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.4e-157 560.5 520 60.6
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 6.9e-157 558.1 520 61.2
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 6.9e-157 558.1 520 60.8
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 1.1e-154 550.8 531 60.5
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 3.6e-153 545.8 520 59.4
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 5.1e-152 542.0 519 58.8
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 2.8e-150 536.2 519 59.3
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 2.6e-148 529.6 519 58.0
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 2.6e-148 529.6 524 59.2
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 2.6e-148 529.6 521 56.6
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 3.8e-147 525.8 506 57.5
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 5.0e-147 525.4 527 56.9
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 2.3e-144 516.5 526 57.8
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.1e-143 514.2 518 56.2
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 2.6e-143 513.1 519 56.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 7.4e-143 511.5 521 57.8
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 7.4e-143 511.5 519 56.5
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 3.7e-142 509.2 519 56.3
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.8e-141 506.9 519 56.1
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.0e-140 503.4 537 57.0
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 5.0e-139 498.8 520 55.0
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.5e-138 497.3 521 53.9
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 3.2e-138 496.1 521 53.7
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 5.5e-138 495.4 497 56.1
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 9.4e-138 494.6 520 55.4
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 2.7e-137 493.0 521 56.4
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 2.7e-137 493.0 520 55.0
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.1e-137 491.9 521 53.6
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 8.0e-137 491.5 484 56.8
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.4e-136 490.7 545 53.8
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 2.3e-136 490.0 448 60.0
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 8.8e-136 488.0 520 55.8
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 4.4e-135 485.7 526 55.9
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 6.3e-134 481.9 519 55.7
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 2.4e-133 479.9 454 57.5
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 5.3e-133 478.8 519 54.9
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.5e-132 475.7 532 52.4
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.2e-131 473.4 533 52.2
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.9e-131 473.0 532 52.1
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.5e-130 470.7 517 53.4
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.5e-130 469.9 347 72.6
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.5e-130 469.9 519 53.8
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 2.5e-130 469.9 522 54.2
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 7.2e-130 468.4 519 53.6
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 3.4e-127 459.5 525 53.3
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 5.7e-127 458.8 524 54.0
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 1.4e-125 454.1 520 52.9
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 3.8e-123 446.0 506 51.6
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 3.2e-122 443.0 519 51.3
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 3.2e-122 443.0 449 55.0
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 1.2e-121 441.0 527 52.0
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.8e-120 437.2 449 56.6
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 5.2e-120 435.6 520 50.6
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 8.8e-120 434.9 531 53.1
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 2.0e-119 433.7 521 51.8
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 4.4e-119 432.6 326 69.3
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 1.3e-118 431.0 346 67.6
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.3e-118 431.0 458 54.4
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 2.8e-118 429.9 348 63.8
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 1.1e-117 427.9 529 51.4
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 5.4e-117 425.6 527 51.6
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 4.3e-114 416.0 522 50.6
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 4.3e-114 416.0 530 50.8
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 2.1e-113 413.7 507 48.1
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.7e-110 404.1 524 50.4
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 4.9e-110 402.5 451 51.2
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.1e-109 401.4 531 51.0
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.4e-109 401.0 525 50.7
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 4.1e-109 399.4 521 49.7
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 1.2e-108 397.9 527 50.9
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.6e-108 397.5 527 49.7
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.6e-108 397.5 524 50.0
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 3.5e-108 396.4 524 50.2
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 4.3e-106 389.4 518 47.3
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 1.6e-105 387.5 525 49.5
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.5e-103 380.9 580 42.4
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.7e-102 377.5 361 56.8
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 2.4e-101 373.6 469 47.3
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 5.4e-101 372.5 346 59.0
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 7.0e-101 372.1 256 71.5
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 2.7e-100 370.2 442 48.6
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.6e-98 362.5 471 46.5
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 6.2e-97 359.0 440 49.1
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 9.9e-87 325.1 405 49.1
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.2e-84 318.2 290 62.4
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.2e-81 308.1 345 53.0
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 6.2e-81 305.8 490 42.0
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.1e-80 303.5 181 81.8
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 4.4e-79 299.7 539 40.8
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 5.1e-75 286.2 420 42.9
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.9e-74 284.3 446 44.4
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 9.3e-69 265.4 526 38.4
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 1.6e-68 264.6 517 37.3
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.6e-65 253.4 541 36.0
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 2.5e-53 214.2 239 44.8
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 2.7e-52 210.7 332 40.4
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.1e-50 205.3 232 54.3
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 1.8e-48 198.0 199 56.8
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.2e-28 132.1 194 41.2
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 8.2e-25 119.4 233 37.8
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 5.0e-22 110.2 209 37.3
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 1.7e-14 85.1 63 65.1
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 4.4e-10 70.5 82 43.9
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 8.3e-09 66.2 112 47.3
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.1e-08 65.9 42 71.4
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.7e-06 58.5 72 56.9


User provided reference genes

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