Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.6e-71 272.7 140 100.0
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.2e-51 204.5 138 82.6
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.2e-50 203.4 118 89.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.2e-41 172.6 107 85.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 6.4e-41 171.0 107 84.1
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 1.7e-38 162.9 107 80.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 4.3e-37 158.3 106 77.4
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 7.3e-37 157.5 123 69.1
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 9.0e-35 150.6 107 75.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 2.0e-34 149.4 105 73.3
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 2.6e-34 149.1 106 74.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 2.6e-34 149.1 105 77.1
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 3.4e-34 148.7 107 73.8
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 7.6e-34 147.5 105 73.3
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 7.6e-34 147.5 107 72.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.7e-33 146.4 106 74.5
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.2e-33 146.0 105 74.3
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.9e-33 145.6 93 78.5
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.8e-33 145.2 105 69.5
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.8e-33 145.2 107 73.8
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.9e-33 144.8 105 73.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.9e-33 144.8 105 73.3
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 8.4e-33 144.1 105 72.4
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 4.2e-32 141.7 107 71.0
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 4.2e-32 141.7 106 69.8
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.2e-32 141.7 106 69.8
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 4.2e-32 141.7 106 68.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 4.2e-32 141.7 106 69.8
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 7.1e-32 141.0 103 68.9
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.3e-32 140.6 106 68.9
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 9.3e-32 140.6 109 69.7
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.2e-31 140.2 106 68.9
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.2e-31 140.2 106 68.9
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 1.2e-31 140.2 105 66.7
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.2e-31 140.2 106 70.8
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.6e-31 139.8 106 69.8
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.1e-31 139.4 108 68.5
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.7e-31 139.0 107 67.3
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 3.5e-31 138.7 93 79.6
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.6e-31 138.3 108 67.6
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 6.0e-31 137.9 104 67.3
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 6.0e-31 137.9 104 66.3
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 6.0e-31 137.9 103 66.0
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 6.0e-31 137.9 106 67.9
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 6.0e-31 137.9 107 70.1
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 7.9e-31 137.5 104 67.3
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 7.9e-31 137.5 104 67.3
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 7.9e-31 137.5 111 65.8
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 7.9e-31 137.5 106 67.9
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.0e-30 137.1 105 65.7
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-30 136.3 104 66.3
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.8e-30 136.3 102 66.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 1.8e-30 136.3 106 68.9
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.8e-30 136.3 106 68.9
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 2.3e-30 136.0 107 66.4
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 2.3e-30 136.0 107 66.4
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.3e-30 136.0 106 67.9
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.3e-30 136.0 108 66.7
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.3e-30 136.0 106 65.1
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 3.0e-30 135.6 105 64.8
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 5.1e-30 134.8 110 67.3
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 5.1e-30 134.8 103 65.0
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 6.7e-30 134.4 107 65.4
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 6.7e-30 134.4 115 60.9
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 8.7e-30 134.0 104 68.3
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 2.5e-29 132.5 108 63.9
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 7.4e-29 131.0 104 65.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 9.6e-29 130.6 89 73.0
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 9.6e-29 130.6 104 65.4
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 2.1e-28 129.4 109 58.7
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 2.1e-28 129.4 119 61.3
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 3.6e-28 128.6 98 64.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 6.2e-28 127.9 99 64.6
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 1.1e-27 127.1 110 64.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.1e-27 127.1 106 64.2
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.4e-27 126.7 101 64.4
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.4e-27 126.7 125 56.8
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.8e-27 126.3 95 63.2
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 2.4e-27 125.9 101 64.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.1e-27 125.6 105 63.8
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 4.0e-27 125.2 93 74.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 5.3e-27 124.8 106 65.1
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 9.0e-27 124.0 93 69.9
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 2.0e-26 122.9 108 55.6
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 2.0e-26 122.9 106 57.5
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 2.0e-26 122.9 103 63.1
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 2.0e-26 122.9 103 63.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 2.6e-26 122.5 101 60.4
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.4e-26 122.1 108 55.6
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 3.4e-26 122.1 94 67.0
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 3.4e-26 122.1 105 63.8
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.5e-26 121.7 106 57.5
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 4.5e-26 121.7 108 55.6
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 4.5e-26 121.7 108 55.6
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.8e-26 121.3 106 57.5
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 5.8e-26 121.3 106 57.5
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 7.6e-26 120.9 92 69.6
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 7.6e-26 120.9 109 62.4
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.6e-26 120.9 105 62.9
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 9.9e-26 120.6 106 57.5
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 9.9e-26 120.6 106 57.5
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 9.9e-26 120.6 106 57.5
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 9.9e-26 120.6 107 64.5
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 9.9e-26 120.6 141 47.5
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 9.9e-26 120.6 106 57.5
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.3e-25 120.2 106 58.5
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.7e-25 119.8 106 57.5
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.2e-25 119.4 106 59.4
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 2.9e-25 119.0 107 57.0
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.9e-25 118.2 105 56.2
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 6.4e-25 117.9 106 55.7
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 6.4e-25 117.9 106 62.3
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-24 117.1 104 55.8
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.2e-24 115.5 111 59.5
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.1e-24 114.4 75 84.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 1.2e-23 113.6 109 57.8
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.2e-23 113.6 96 63.5
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-23 113.2 100 64.0
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 1.6e-23 113.2 108 57.4
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.7e-23 112.5 107 57.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.7e-23 112.5 106 56.6
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.9e-23 110.9 89 60.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 7.9e-23 110.9 89 60.7
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.8e-22 109.8 92 58.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 6.7e-22 107.8 87 59.8
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 8.7e-22 107.5 108 57.4
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 3.3e-21 105.5 102 53.9
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 4.3e-21 105.1 74 75.7
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 9.6e-21 104.0 124 48.4
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.3e-20 103.6 108 51.9
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 4.0e-19 98.6 108 54.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 2.9e-17 92.4 67 74.6
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.2e-16 88.6 64 70.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 1.2e-15 87.0 77 64.9
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 1.2e-15 87.0 74 64.9
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.0e-14 84.0 76 65.8
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 1.8e-14 83.2 99 45.5
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 8.7e-14 80.9 73 61.6
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 3.3e-13 79.0 83 50.6
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.3e-13 79.0 57 66.7
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.8e-12 75.9 57 71.9
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 6.3e-12 74.7 110 40.0
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 8.2e-12 74.3 79 58.2
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 6.9e-11 71.2 66 68.2
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 3.4e-10 68.9 74 50.0
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.1e-08 63.9 104 41.3
Cfa013238 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.1e-07 59.7 40 70.0
Solyc11g065610.1 Solanum lycopersicum HOM05D005271 ORTHO05D006072 8.7e-06 54.3 37 64.9


User provided reference genes

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