Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 5.7e-95 350.9 175 100.0
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.0e-59 233.8 139 83.5
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.7e-59 233.0 137 86.9
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 1.1e-58 230.3 137 82.5
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 1.5e-50 203.4 145 71.7
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 8.8e-48 194.1 123 75.6
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 2.6e-47 192.6 133 69.9
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 3.4e-47 192.2 135 69.6
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 3.4e-47 192.2 123 74.8
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 7.5e-47 191.0 135 68.1
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 7.5e-47 191.0 125 76.8
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.3e-46 190.3 126 73.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.9e-46 188.3 120 73.3
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.3e-46 187.6 120 73.3
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-45 186.8 120 72.5
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-45 186.8 123 71.5
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-45 186.8 120 72.5
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.4e-45 186.8 120 72.5
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-45 186.0 120 72.5
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.4e-45 186.0 120 72.5
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 2.4e-45 186.0 120 75.0
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.4e-45 184.9 120 71.7
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-44 183.7 120 71.7
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 2.0e-44 183.0 122 69.7
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.3e-43 180.3 112 75.0
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-43 179.9 127 68.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 5.0e-43 178.3 128 64.8
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.1e-42 177.2 122 69.7
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.3e-42 175.6 120 70.0
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.2e-42 175.3 129 64.3
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.2e-42 175.3 109 76.1
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.6e-42 174.9 120 70.0
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.6e-42 174.9 120 69.2
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 5.6e-42 174.9 130 62.3
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 9.5e-42 174.1 120 66.7
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 1.2e-41 173.7 134 64.9
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.6e-41 173.3 160 58.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 2.1e-41 172.9 123 63.4
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 2.8e-41 172.6 120 68.3
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 2.8e-41 172.6 149 60.4
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 3.6e-41 172.2 127 66.9
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.6e-41 172.2 140 62.9
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 4.7e-41 171.8 130 61.5
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 4.7e-41 171.8 136 62.5
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.0e-40 170.6 134 61.9
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.4e-40 170.2 122 67.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 3.0e-40 169.1 127 61.4
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.0e-40 168.7 129 63.6
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 5.2e-40 168.3 110 69.1
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 5.2e-40 168.3 135 60.7
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 8.9e-40 167.5 135 57.8
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.2e-39 167.2 138 58.7
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.5e-39 166.8 127 62.2
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-39 166.4 100 76.0
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 2.6e-39 166.0 113 69.9
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.6e-39 166.0 134 60.4
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 3.4e-39 165.6 144 54.9
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 3.4e-39 165.6 135 58.5
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 4.4e-39 165.2 125 60.8
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 7.5e-39 164.5 135 61.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 7.5e-39 164.5 127 60.6
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.3e-38 163.7 118 65.3
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.7e-38 163.3 144 56.9
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 8.3e-38 161.0 162 51.9
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 8.3e-38 161.0 134 59.0
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.1e-37 160.6 127 60.6
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.6e-36 156.8 115 63.5
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 3.5e-36 155.6 122 60.7
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 7.8e-36 154.5 122 62.3
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.0e-35 154.1 124 58.9
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 2.3e-35 152.9 127 59.1
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 4.7e-33 145.2 144 54.2
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 4.7e-33 145.2 144 54.2
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.0e-32 144.1 136 52.9
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.4e-32 143.7 100 67.0
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.8e-32 143.3 127 59.1
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 1.7e-30 136.7 125 60.0
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-30 136.3 88 71.6
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 3.7e-30 135.6 127 56.7
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.9e-30 135.2 129 53.5
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 8.3e-30 134.4 219 37.0
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.4e-29 133.7 120 56.7
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.4e-29 132.9 123 52.8
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.6e-28 128.6 88 70.5
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.9e-27 125.6 115 56.5
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 4.3e-26 122.1 113 55.8
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 5.6e-26 121.7 110 60.9
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 7.3e-26 121.3 95 61.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 9.5e-26 120.9 95 61.1
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 9.5e-26 120.9 129 52.7
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.2e-25 120.6 90 60.0
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.6e-25 120.2 129 49.6
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 8.1e-25 117.9 120 51.7
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.1e-24 117.5 134 51.5
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 2.3e-24 116.3 125 50.4
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 2.3e-24 116.3 79 70.9
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 4.0e-24 115.5 125 50.4
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.5e-23 113.6 125 50.4
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 3.4e-23 112.5 124 49.2
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.2e-22 109.8 122 50.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 8.3e-22 107.8 111 52.3
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 8.3e-22 107.8 112 49.1
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.9e-21 106.7 122 49.2
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 2.4e-21 106.3 129 46.5
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.4e-21 106.3 120 48.3
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 3.2e-21 105.9 109 51.4
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.1e-21 104.8 126 46.0
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.6e-20 103.6 110 50.9
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 2.7e-20 102.8 129 44.2
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 4.6e-20 102.1 108 48.1
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.0e-19 100.9 127 48.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.0e-19 100.9 123 45.5
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 6.6e-19 98.2 74 63.5
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 8.6e-19 97.8 74 60.8
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 1.5e-18 97.1 124 45.2
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 1.5e-18 97.1 122 46.7
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 2.5e-18 96.3 132 41.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.3e-18 95.9 60 75.0
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 7.3e-18 94.7 110 45.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 2.3e-16 89.7 94 47.9
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 5.2e-16 88.6 75 53.3
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 6.8e-16 88.2 104 49.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.5e-15 87.0 70 57.1
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 8.4e-14 81.3 122 36.1
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.9e-13 80.1 111 40.5
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.7e-12 76.3 93 49.5
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 2.7e-12 76.3 115 39.1
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 3.0e-11 72.8 45 73.3
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.5e-10 70.5 55 56.4
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.9e-10 70.1 55 56.4
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 2.5e-10 69.7 54 59.3
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.6e-09 67.0 61 50.8
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 3.1e-08 62.8 68 50.0
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 8.9e-08 61.2 50 54.0
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.0e-07 60.1 56 60.7
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.6e-07 59.7 85 42.4
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.4e-07 59.3 85 42.4
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 2.9e-06 56.2 45 60.0


User provided reference genes

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