Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 4.3e-206 721.1 366 100.0
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.7e-146 523.1 443 68.8
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 1.5e-129 466.8 388 68.3
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 8.7e-98 361.3 382 55.2
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 4.5e-78 295.8 386 46.1
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.7e-77 293.9 393 48.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.7e-75 286.6 388 46.4
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 1.8e-74 283.9 388 46.4
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 4.0e-74 282.7 391 47.1
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 4.4e-73 279.3 388 45.9
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.4e-71 274.2 396 44.9
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 2.4e-71 273.5 395 45.1
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 5.3e-71 272.3 395 44.6
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 2.0e-70 270.4 393 43.5
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 2.0e-70 270.4 386 43.5
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 2.7e-70 270.0 388 43.8
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 2.7e-70 270.0 397 43.3
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 3.5e-70 269.6 386 43.5
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 3.5e-70 269.6 395 44.6
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 6.5e-69 265.4 395 44.1
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 8.5e-69 265.0 393 44.0
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 3.2e-68 263.1 388 44.1
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 4.2e-68 262.7 389 43.2
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 4.2e-68 262.7 392 44.6
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 1.6e-67 260.8 402 41.8
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 3.6e-67 259.6 384 44.0
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 4.7e-67 259.2 392 44.6
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 6.1e-67 258.8 389 43.2
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 6.1e-67 258.8 388 43.0
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 4.0e-66 256.1 390 41.8
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 2.6e-65 253.4 386 41.5
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 7.5e-65 251.9 397 41.8
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.3e-64 251.1 398 42.2
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.2e-64 250.4 395 41.3
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 8.3e-64 248.4 396 42.9
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 7.0e-63 245.4 395 43.5
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 9.1e-63 245.0 411 41.4
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.0e-62 243.8 386 40.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 4.5e-62 242.7 238 55.9
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 2.2e-61 240.4 398 40.5
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 2.9e-61 240.0 397 40.3
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.9e-60 237.3 396 41.7
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 2.5e-60 236.9 396 41.7
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 3.6e-59 233.0 393 41.7
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 1.8e-58 230.7 388 43.0
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 1.3e-56 224.6 404 40.6
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 1.8e-55 220.7 388 39.7
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.6e-54 217.6 240 51.2
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.6e-54 217.6 409 37.4
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.0e-53 214.9 410 38.3
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.3e-53 214.5 386 40.2
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 5.0e-53 212.6 393 38.2
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 5.0e-53 212.6 240 50.4
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 6.6e-53 212.2 472 36.0
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 1.5e-52 211.1 337 42.1
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 2.5e-52 210.3 388 38.4
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 2.8e-51 206.8 396 37.1
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 2.8e-51 206.8 388 37.4
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 3.6e-51 206.5 401 37.2
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 8.0e-51 205.3 391 37.9
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.0e-50 204.9 393 37.2
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 1.0e-50 204.9 394 37.1
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 1.0e-50 204.9 393 37.2
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.3e-50 203.8 395 38.2
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 8.9e-50 201.8 391 38.1
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.2e-49 201.4 396 38.4
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.5e-49 201.1 397 36.3
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 2.0e-49 200.7 240 49.2
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 2.6e-49 200.3 421 36.6
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 2.6e-49 200.3 393 36.4
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 3.4e-49 199.9 397 36.3
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 9.8e-49 198.4 245 48.6
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 2.2e-48 197.2 393 36.9
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 2.9e-48 196.8 394 38.1
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 6.4e-48 195.7 394 36.5
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 8.3e-48 195.3 400 38.0
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 1.8e-47 194.1 399 36.3
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 2.4e-47 193.7 383 37.1
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.6e-46 191.0 395 35.9
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 3.5e-46 189.9 245 46.9
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 5.9e-46 189.1 253 46.2
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 5.9e-46 189.1 401 37.9
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 2.3e-45 187.2 395 34.9
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 8.6e-45 185.3 400 36.8
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 1.5e-44 184.5 394 36.5
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 4.3e-44 183.0 427 34.0
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 3.6e-43 179.9 234 44.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 1.7e-40 171.0 375 34.1
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 1.9e-36 157.5 377 33.7
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.5e-36 157.1 402 31.8
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 8.1e-35 152.1 356 34.0
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.7e-32 143.3 217 43.3
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 3.7e-32 143.3 437 31.1
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 1.1e-31 141.7 241 39.0
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 1.4e-31 141.4 402 31.8
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 4.6e-30 136.3 372 30.6
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 5.1e-29 132.9 389 31.9
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 3.3e-28 130.2 241 35.7
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.8e-27 127.1 205 44.4
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 4.0e-26 123.2 218 39.4
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.3e-24 118.2 195 37.9
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 1.4e-23 114.8 253 32.4
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 5.4e-23 112.8 76 77.6
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.8e-18 97.8 107 50.5
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 2.6e-17 94.0 192 37.0
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.5e-14 83.6 383 26.6
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 3.0e-13 80.5 370 23.8
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 3.9e-13 80.1 383 25.8
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 5.6e-12 76.3 406 25.4
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 1.6e-11 74.7 74 50.0
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.4e-10 70.9 86 45.3
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 2.0e-09 67.8 65 53.8
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 2.6e-09 67.4 61 60.7
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.4e-07 60.8 235 28.9
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 7.1e-07 59.3 90 42.2
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 7.1e-07 59.3 59 54.2
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 1.2e-06 58.5 91 37.4


User provided reference genes

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