Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-73 278.9 139 100.0
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.8e-52 208.8 139 78.4
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 3.5e-23 112.1 139 49.6
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 3.4e-18 95.5 139 42.4
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 6.4e-17 91.3 137 43.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 7.1e-16 87.8 141 45.4
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.1e-16 87.8 140 45.0
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.1e-16 87.8 139 43.9
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 1.2e-15 87.0 132 40.9
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.6e-15 86.7 134 43.3
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.6e-15 86.7 141 44.7
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.1e-15 86.3 139 43.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.7e-15 85.9 134 44.0
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 3.5e-15 85.5 134 42.5
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.5e-15 85.5 142 43.7
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.0e-14 84.0 139 41.0
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.0e-14 84.0 116 45.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.0e-14 84.0 140 42.1
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.3e-14 83.6 136 41.9
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-14 83.2 135 44.4
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.3e-14 82.8 133 44.4
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 3.9e-14 82.0 133 41.4
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.9e-14 82.0 133 40.6
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 6.6e-14 81.3 131 38.9
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 6.6e-14 81.3 140 39.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 8.7e-14 80.9 137 41.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-13 80.5 133 42.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 1.1e-13 80.5 133 42.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 1.1e-13 80.5 133 42.1
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.1e-13 80.5 148 43.2
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 1.1e-13 80.5 136 38.2
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 1.5e-13 80.1 140 42.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.9e-13 79.7 128 38.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.9e-13 79.7 128 38.3
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.5e-13 79.3 133 42.9
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.5e-13 79.3 139 38.1
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 2.5e-13 79.3 118 42.4
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 2.5e-13 79.3 136 38.2
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 3.3e-13 79.0 138 41.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.3e-13 79.0 133 41.4
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 3.3e-13 79.0 136 37.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.3e-13 78.6 130 38.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.3e-13 78.6 138 39.1
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 5.6e-13 78.2 132 38.6
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 5.6e-13 78.2 139 38.8
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 5.6e-13 78.2 98 44.9
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.6e-13 78.2 130 38.5
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 5.6e-13 78.2 133 42.9
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 5.6e-13 78.2 93 46.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 7.3e-13 77.8 139 40.3
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.3e-13 77.8 144 39.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.3e-13 77.8 133 39.1
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.3e-12 77.0 139 38.8
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.3e-12 77.0 139 38.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.6e-12 76.6 102 46.1
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 1.6e-12 76.6 140 42.9
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 1.6e-12 76.6 133 38.3
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.6e-12 76.6 133 38.3
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.6e-12 76.6 131 41.2
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.6e-12 76.6 134 39.6
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.1e-12 76.3 144 41.7
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 2.1e-12 76.3 94 52.1
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.1e-12 76.3 140 38.6
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 2.1e-12 76.3 93 45.2
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 2.1e-12 76.3 118 41.5
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 2.8e-12 75.9 142 40.8
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.8e-12 75.9 140 38.6
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 3.6e-12 75.5 129 40.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.6e-12 75.5 140 39.3
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 3.6e-12 75.5 93 46.2
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 4.8e-12 75.1 144 41.0
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 4.8e-12 75.1 93 45.2
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 6.2e-12 74.7 94 52.1
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 6.2e-12 74.7 94 52.1
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 8.1e-12 74.3 133 38.3
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.1e-11 73.9 103 40.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.4e-11 73.6 93 47.3
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.8e-11 73.2 140 40.7
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 2.4e-11 72.8 93 52.7
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.4e-11 72.8 93 45.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.4e-11 72.8 130 36.2
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 4.0e-11 72.0 117 41.9
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.0e-11 72.0 139 36.0
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 4.0e-11 72.0 97 48.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 4.0e-11 72.0 97 48.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 4.0e-11 72.0 97 48.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 4.0e-11 72.0 93 44.1
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.0e-11 72.0 130 40.0
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 5.3e-11 71.6 102 46.1
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 5.3e-11 71.6 127 42.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.2e-10 70.5 134 36.6
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.2e-10 70.5 117 39.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.2e-10 70.5 37 91.9
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 1.5e-10 70.1 37 91.9
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 2.0e-10 69.7 132 42.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.0e-10 69.7 140 37.1
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 2.0e-10 69.7 138 35.5
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.6e-10 69.3 37 89.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.6e-10 69.3 140 40.7
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 3.4e-10 68.9 139 37.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.4e-10 68.9 37 86.5
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 3.4e-10 68.9 37 86.5
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 5.8e-10 68.2 37 89.2
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.8e-10 68.2 37 83.8
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 5.8e-10 68.2 37 83.8
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 9.9e-10 67.4 37 86.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 9.9e-10 67.4 36 83.3
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.9e-10 67.4 133 36.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-09 67.0 37 83.8
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.3e-09 67.0 37 83.8
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.3e-09 67.0 93 43.0
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.2e-09 66.2 37 83.8
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 2.9e-09 65.9 100 41.0
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 3.8e-09 65.5 37 83.8
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.1e-08 63.9 138 37.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.9e-08 63.2 37 75.7
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.2e-08 62.4 132 35.6
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 4.2e-08 62.0 112 37.5
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.2e-08 62.0 36 75.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.1e-07 59.7 37 75.7
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-07 59.3 37 78.4
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.7e-07 59.3 32 87.5
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-06 56.6 37 70.3
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 6.6e-06 54.7 36 66.7


User provided reference genes

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