Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.2e-243 844.7 450 100.0
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.0e-173 611.3 462 73.4
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-172 609.8 472 72.2
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.6e-164 580.9 477 69.2
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 1.2e-157 560.5 472 66.9
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.5e-157 558.9 473 66.8
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 7.8e-157 557.8 473 66.8
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 3.6e-154 548.9 487 64.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.5e-152 543.5 472 65.5
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-150 537.0 472 65.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.7e-149 532.7 471 63.7
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.0e-148 530.8 472 64.0
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.1e-148 528.5 473 63.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 6.6e-148 528.1 474 63.1
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.5e-147 526.2 461 64.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 2.5e-147 526.2 474 62.7
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 1.8e-145 520.0 472 62.7
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.5e-144 516.9 471 63.1
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 7.6e-144 514.6 473 62.4
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.7e-143 513.5 471 63.7
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 2.2e-143 513.1 478 62.6
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 4.9e-143 511.9 472 61.2
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 2.4e-142 509.6 472 61.2
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.2e-142 508.8 471 60.9
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.6e-141 506.9 471 62.0
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.0e-140 504.2 472 60.0
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.3e-140 503.1 475 60.8
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 8.7e-140 501.1 473 61.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 8.7e-140 501.1 471 60.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-139 500.4 473 60.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.5e-139 499.6 474 61.6
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.5e-139 499.6 472 59.7
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 1.3e-138 497.3 472 61.0
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.8e-138 495.4 474 61.4
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.1e-138 494.6 473 61.1
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.1e-137 494.2 473 60.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 2.4e-137 493.0 479 59.5
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 6.9e-137 491.5 471 58.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 9.0e-137 491.1 525 56.6
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.4e-136 489.2 558 55.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.8e-135 485.7 473 57.9
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 3.8e-135 485.7 473 59.4
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 8.4e-135 484.6 474 59.1
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 8.4e-135 484.6 473 59.4
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.9e-134 483.4 473 60.0
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 4.2e-134 482.3 474 58.2
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-133 480.3 443 60.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.1e-133 479.9 467 61.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 7.9e-133 478.0 476 56.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.3e-132 477.2 470 57.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.8e-132 476.9 507 57.0
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.3e-132 476.5 475 59.4
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 2.3e-132 476.5 479 58.7
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 3.0e-132 476.1 472 59.3
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 3.0e-132 476.1 472 58.3
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.9e-132 475.7 471 58.0
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 5.1e-132 475.3 476 58.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 5.1e-132 475.3 471 57.3
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 8.7e-132 474.6 472 58.1
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 1.1e-131 474.2 472 59.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.5e-131 473.8 474 57.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.5e-131 473.8 472 57.8
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 2.5e-131 473.0 472 58.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 4.3e-131 472.2 474 56.8
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 7.4e-131 471.5 477 56.4
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 7.4e-131 471.5 475 57.9
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 7.4e-131 471.5 478 56.3
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.3e-130 470.7 474 56.8
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.3e-130 470.7 477 57.0
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 2.8e-130 469.5 474 56.8
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.4e-129 466.5 474 55.7
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.4e-129 466.5 469 58.2
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 2.4e-129 466.5 472 57.0
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 5.3e-129 465.3 470 57.9
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 5.3e-129 465.3 473 57.7
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 9.0e-129 464.5 472 56.8
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 5.8e-128 461.8 464 57.8
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 5.8e-128 461.8 464 57.8
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.3e-127 460.7 480 54.6
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.2e-127 459.9 471 55.8
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 6.5e-127 458.4 415 63.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.5e-127 458.4 481 54.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.4e-126 457.2 472 57.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 4.2e-126 455.7 460 56.1
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 2.7e-125 453.0 459 56.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.5e-125 452.6 473 59.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 3.5e-125 452.6 469 56.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.3e-124 450.7 464 56.5
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.0e-124 449.5 473 56.4
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 3.9e-124 449.1 474 54.9
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.9e-123 446.8 476 54.0
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 2.5e-123 446.4 455 55.8
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 4.3e-123 445.7 473 54.5
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 4.3e-123 445.7 433 59.1
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.6e-122 443.7 478 55.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.8e-122 442.2 476 56.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.8e-122 442.2 476 53.8
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 6.3e-122 441.8 476 53.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.4e-121 440.7 472 53.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.4e-121 439.9 478 57.9
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 9.0e-121 438.0 444 58.3
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.5e-120 437.2 453 56.1
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 1.5e-120 437.2 477 54.5
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-120 436.8 463 56.6
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.4e-120 436.0 476 55.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 1.3e-119 434.1 459 54.5
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 1.7e-119 433.7 472 53.8
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.9e-119 433.0 476 53.2
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.8e-119 432.6 475 52.8
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 5.0e-119 432.2 471 54.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-118 430.3 463 52.7
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.1e-117 425.2 461 57.7
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.4e-116 424.1 441 56.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.5e-115 419.9 454 54.8
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 8.2e-114 414.8 474 53.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.1e-113 412.9 453 53.9
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 7.7e-112 408.3 476 50.6
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.7e-104 381.7 479 50.3
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.2e-102 376.3 465 49.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 4.2e-102 375.9 442 52.0
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 5.3e-97 359.0 356 60.7
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 6.1e-93 345.5 444 50.2
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.5e-91 340.9 409 54.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 6.3e-90 335.5 293 60.8
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 7.2e-86 322.0 384 49.7
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.2e-84 315.8 444 47.3
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 8.8e-84 315.1 298 59.4
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.5e-83 312.0 182 85.2
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 7.5e-83 312.0 285 59.6
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 7.0e-81 305.4 467 40.5
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 6.6e-79 298.9 471 39.1
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 2.3e-71 273.9 244 67.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.9e-65 254.2 281 53.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.0e-63 246.1 178 71.3
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.6e-59 233.8 452 39.2
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 4.4e-59 233.0 168 67.9
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.9e-55 219.9 368 41.3
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 8.6e-55 218.8 171 66.7
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 2.2e-50 204.1 230 53.9
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.9e-49 201.1 205 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 8.1e-45 185.7 139 62.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-42 177.6 151 69.5
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 2.3e-31 141.0 112 70.5
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.1e-30 138.7 272 39.7
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-27 128.3 93 71.0
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 2.0e-27 127.9 162 50.6
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.4e-26 122.9 98 63.3
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.3e-21 108.6 97 62.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 5.3e-20 103.2 265 33.2
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.6e-19 100.9 93 62.4
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.3e-14 83.6 114 45.6
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 5.0e-10 70.1 270 25.6
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 2.5e-09 67.8 262 25.6
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.1e-06 58.9 43 72.1


User provided reference genes

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