Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0154500 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.9e-81 305.1 144 100.0
Rhsim05G0087700 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.2e-72 274.6 177 78.5
RhsimUnG0164400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.7e-65 252.7 173 74.6
Rhsim05G0108800 Rhododendron simsii HOM05D000808 ORTHO05D000863 2.0e-58 229.2 109 97.2
Rhsim08G0127400 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.7e-57 226.1 170 69.4
RhsimUnG0076900 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.4e-51 205.7 103 89.3
Rhsim01G0135900 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.8e-50 200.7 157 65.6
Rhsim01G0121300 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.2e-47 191.0 144 68.1
Rhsim09G0063300 Rhododendron simsii HOM05D000030 ORTHO05D000031 1.9e-43 179.5 130 69.2
Rhsim09G0078700 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.0e-42 174.5 123 72.4
Rhsim07G0148300 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.3e-38 162.5 125 66.4
Rhsim05G0112400 Rhododendron simsii HOM05D011579 ORTHO05D011435 2.9e-36 155.6 111 64.0
Rhsim01G0119600 Rhododendron simsii HOM05D011579 ORTHO05D011435 9.5e-32 140.6 165 46.1
Rhsim06G0111000 Rhododendron simsii HOM05D000107 ORTHO05D011435 3.0e-25 119.0 88 59.1
vmacro03392 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.3e-24 115.5 94 54.3
vmacro16050 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.3e-24 115.5 94 54.3
Rhsim09G0063800 Rhododendron simsii HOM05D011579 ORTHO05D011435 6.9e-22 107.8 116 50.9
Rhsim02G0159100 Rhododendron simsii HOM05D011579 ORTHO05D011435 1.4e-19 100.1 94 60.6
Hma1.2p1_0690F.1_g203890 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 1.6e-18 96.7 103 43.7
Rhsim10G0126300 Rhododendron simsii HOM05D011579 ORTHO05D011435 4.6e-18 95.1 108 43.5
Hma1.2p1_0293F.1_g116320 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 7.8e-18 94.4 112 40.2
RcHm_v2.0_Chr1g0332031 Rosa chinensis HOM05D000176 ORTHO05D000106 8.7e-17 90.9 89 44.9
RcHm_v2.0_Chr5g0043391 Rosa chinensis HOM05D000176 ORTHO05D000106 2.5e-16 89.4 113 39.8
FAN24G0751 Fragaria x ananassa HOM05D000176 ORTHO05D002183 2.1e-15 86.3 89 42.7
Hma1.2p1_1995F.1_g310310 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 8.1e-15 84.3 103 38.8
Lj3C888T3 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-14 83.2 117 35.9
Lj9C281T4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-14 83.2 117 35.9
Lju1034C2T5 Lonicera japonica HOM05D000176 ORTHO05D000106 1.8e-14 83.2 107 39.3
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 2.4e-14 82.8 92 47.8
Lj5C240T11 Lonicera japonica HOM05D000176 ORTHO05D000106 2.4e-14 82.8 112 36.6
FvH4_6g36961 Fragaria vesca HOM05D000176 ORTHO05D000106 4.0e-14 82.0 89 40.4
CSS0007507 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.0e-14 80.9 92 38.0
CSS0039650 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.0e-14 80.9 92 39.1
CSS0048717 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 9.0e-14 80.9 92 39.1
Lj5A683T12 Lonicera japonica HOM05D000176 ORTHO05D000106 2.0e-13 79.7 117 35.0
Lj5A194T79 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-13 79.0 93 39.8
Lj7A410T9 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-13 79.0 88 39.8
Lju279A7T18 Lonicera japonica HOM05D000176 ORTHO05D000106 3.4e-13 79.0 117 35.9
Lj4A736T37 Lonicera japonica HOM05D000176 ORTHO05D000106 4.5e-13 78.6 93 39.8
Lj6A472T10 Lonicera japonica HOM05D000176 ORTHO05D000106 4.5e-13 78.6 118 34.7
CSS0008763 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.6e-13 77.8 65 52.3
CSS0020110 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.6e-13 77.8 65 52.3
CSS0030884 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.6e-13 77.8 65 52.3
CSS0045734 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.6e-13 77.8 65 52.3
CSS0049005 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.6e-13 77.8 65 52.3
Lj4C121T9 Lonicera japonica HOM05D000176 ORTHO05D000106 1.3e-12 77.0 118 35.6
CSS0009167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.2e-12 76.3 92 38.0
Hma1.2p1_0913F.1_g236030 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 2.2e-12 76.3 103 36.9
Lj7C245G13 Lonicera japonica HOM05D000176 ORTHO05D000106 2.2e-12 76.3 109 38.5
CSS0023765 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 2.9e-12 75.9 65 52.3
Lj3A160G33 Lonicera japonica HOM05D000176 ORTHO05D000106 2.9e-12 75.9 93 38.7
Lj9C183T0 Lonicera japonica HOM05D000176 ORTHO05D002183 2.9e-12 75.9 121 35.5
Lju1680C2T1 Lonicera japonica HOM05D000176 ORTHO05D000106 3.8e-12 75.5 121 37.2
CSS0001401 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 4.9e-12 75.1 92 38.0
CSS0036407 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 4.9e-12 75.1 65 52.3
CSS0048540 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 4.9e-12 75.1 65 52.3
Lj6C514G1 Lonicera japonica HOM05D000176 ORTHO05D000106 6.4e-12 74.7 120 35.8
Lj9C449G12 Lonicera japonica HOM05D000176 ORTHO05D000106 6.4e-12 74.7 118 35.6
Lj1C595G6 Lonicera japonica HOM05D000176 ORTHO05D000106 8.4e-12 74.3 115 35.7
Lju188C3T12 Lonicera japonica HOM05D000176 ORTHO05D000106 1.1e-11 73.9 91 36.3
Lj3A82T20 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-11 73.2 97 37.1
Lj8C418G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-11 73.2 88 42.0
Lju124P4T4 Lonicera japonica HOM05D000176 ORTHO05D011435 1.9e-11 73.2 94 39.4
Lj2A866T16 Lonicera japonica HOM05D000176 ORTHO05D000106 2.4e-11 72.8 91 39.6
Lj1A491T22 Lonicera japonica HOM05D000176 ORTHO05D000106 4.2e-11 72.0 88 40.9
Lj5C659T2 Lonicera japonica HOM05D000176 ORTHO05D000106 4.2e-11 72.0 88 40.9
Lj5C702T0 Lonicera japonica HOM05D000176 ORTHO05D000106 4.2e-11 72.0 88 40.9
Lj2C466G13 Lonicera japonica HOM05D000176 ORTHO05D000106 5.4e-11 71.6 88 39.8
Lj9C343T5 Lonicera japonica HOM05D000176 ORTHO05D000106 5.4e-11 71.6 121 35.5
MD17G1028300 Malus domestica HOM05D000176 ORTHO05D000106 5.4e-11 71.6 87 37.9
CSS0021615 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 7.1e-11 71.2 65 47.7
Lj5A265T32 Lonicera japonica HOM05D000176 ORTHO05D000106 7.1e-11 71.2 88 36.4
EL10Ac3g06792 Beta vulgaris HOM05D000176 ORTHO05D000106 9.3e-11 70.9 91 36.3
CSS0048564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D011435 1.6e-10 70.1 92 35.9
Lj6C562T7 Lonicera japonica HOM05D000176 ORTHO05D000106 1.6e-10 70.1 87 39.1
EL10Ac5g12113 Beta vulgaris HOM05D000176 ORTHO05D002183 2.1e-10 69.7 108 33.3
EL10Ac7g17342 Beta vulgaris HOM05D000176 ORTHO05D000106 2.7e-10 69.3 122 30.3
EL10Ac7g17344 Beta vulgaris HOM05D000176 ORTHO05D000106 2.7e-10 69.3 122 30.3
EL10Ac2g02712 Beta vulgaris HOM05D000176 ORTHO05D000106 3.5e-10 68.9 122 29.5
Lj2C1107G22 Lonicera japonica HOM05D000176 ORTHO05D000106 3.5e-10 68.9 88 39.8
Lj5C312G4 Lonicera japonica HOM05D000176 ORTHO05D000106 3.5e-10 68.9 83 41.0
Rhsim03G0082400 Rhododendron simsii HOM05D000874 ORTHO05D001049 3.5e-10 68.9 99 40.4
Lj1A172T27 Lonicera japonica HOM05D000176 ORTHO05D000106 4.6e-10 68.6 86 38.4
EL10Ac6g14114 Beta vulgaris HOM05D000176 ORTHO05D000106 6.0e-10 68.2 100 35.0
Lj3C84G3 Lonicera japonica HOM05D000176 ORTHO05D000106 6.0e-10 68.2 118 33.1
CSS0002224 Camellia sinensis var. sinensis HOM05D014304 ORTHO05D011435 1.0e-09 67.4 65 49.2
Lj8A506T8 Lonicera japonica HOM05D000176 ORTHO05D000106 1.0e-09 67.4 118 32.2
Rhsim10G0155400 Rhododendron simsii HOM05D007801 ORTHO05D009763 1.8e-09 66.6 38 86.8
Lj3C54G11 Lonicera japonica HOM05D000176 ORTHO05D000106 3.0e-09 65.9 118 32.2
Lj8A112T24 Lonicera japonica HOM05D000176 ORTHO05D000106 5.1e-09 65.1 92 33.7
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 5.1e-09 65.1 83 51.8
Lju124C17G5 Lonicera japonica HOM05D000176 ORTHO05D000106 6.7e-09 64.7 93 35.5
Lju188C6G6 Lonicera japonica HOM05D000176 ORTHO05D000106 6.7e-09 64.7 121 33.1
PSO017G5879 Papaver somniferum HOM05D000176 ORTHO05D000106 6.7e-09 64.7 92 38.0
Lj8C518G1 Lonicera japonica HOM05D000176 ORTHO05D000106 8.7e-09 64.3 128 32.0
Rhsim02G0150600 Rhododendron simsii HOM05D011579 ORTHO05D011435 8.7e-09 64.3 45 57.8
PSO675G7692 Papaver somniferum HOM05D000176 ORTHO05D000106 1.1e-08 63.9 92 38.0
Rhsim10G0076500 Rhododendron simsii HOM05D003738 ORTHO05D011435 1.1e-08 63.9 50 58.0
Lj1C479G4 Lonicera japonica HOM05D000176 ORTHO05D000106 1.5e-08 63.5 92 32.6
Lju470C8G1 Lonicera japonica HOM05D000176 ORTHO05D000106 1.9e-08 63.2 67 43.3
EL10Ac4g08649 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-08 62.4 89 38.2
EL10Ac4g08651 Beta vulgaris HOM05D000176 ORTHO05D000106 3.3e-08 62.4 89 38.2
MD06G1202700 Malus domestica HOM05D000115 ORTHO05D003511 3.3e-08 62.4 113 29.2
EL10Ac3g06558 Beta vulgaris HOM05D000176 ORTHO05D000106 5.6e-08 61.6 89 37.1
Lj2C996G10 Lonicera japonica HOM05D000176 ORTHO05D000106 5.6e-08 61.6 121 29.8
Lj6P836T32 Lonicera japonica HOM05D000176 ORTHO05D000106 5.6e-08 61.6 91 36.3
Lj9C207T4 Lonicera japonica HOM05D000176 ORTHO05D000106 7.4e-08 61.2 92 31.5
EL10Ac9g21153 Beta vulgaris HOM05D000176 ORTHO05D000106 1.6e-07 60.1 89 34.8
Aqoxy6G02007 Aquilegia oxysepala HOM05D025411 ORTHO05D000106 2.1e-07 59.7 95 30.5
Aqoxy3G01710 Aquilegia oxysepala HOM05D000176 ORTHO05D011435 3.7e-07 58.9 92 37.0
Lj1A1169T72 Lonicera japonica HOM05D000176 ORTHO05D000106 6.2e-07 58.2 94 34.0
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 8.1e-07 57.8 93 31.2
Aqoxy3G01281 Aquilegia oxysepala HOM05D025411 ORTHO05D000140 1.1e-06 57.4 95 31.6
Lj7P460T35 Lonicera japonica HOM05D000176 ORTHO05D000106 3.1e-06 55.8 100 32.0
TPR.G8598 Trifolium pratense HOM05D005718 ORTHO05D004853 3.1e-06 55.8 113 32.7
Ah.01g016400 Amaranthus hybridus HOM05D000176 ORTHO05D000106 5.3e-06 55.1 93 35.5
Ah.01g016230 Amaranthus hybridus HOM05D000176 ORTHO05D000106 6.9e-06 54.7 92 34.8
Ah.01g016330 Amaranthus hybridus HOM05D018751 ORTHO05D012560 6.9e-06 54.7 92 34.8
Lj4P686T45 Lonicera japonica HOM05D000176 ORTHO05D000106 6.9e-06 54.7 59 44.1
CSS0050454 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.0e-06 54.3 59 42.4


User provided reference genes

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