Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.1e-131 473.8 340 100.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 7.6e-96 354.8 210 89.5
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.4e-94 350.5 229 83.8
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 7.1e-94 348.2 233 82.4
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 7.1e-94 348.2 223 83.9
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 6.7e-92 341.7 236 80.5
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 6.9e-89 331.6 220 80.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.3e-87 327.4 236 76.3
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 2.2e-87 326.6 235 75.3
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 1.4e-86 323.9 205 82.4
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.2e-86 322.4 228 76.8
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.2e-85 320.9 232 75.0
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.6e-85 320.5 236 77.1
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 3.5e-85 319.3 207 81.2
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 4.6e-85 318.9 230 74.3
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 4.6e-85 318.9 211 81.0
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.0e-84 317.8 197 87.3
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.0e-84 317.8 237 75.1
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.3e-84 317.4 237 75.5
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 1.8e-84 317.0 237 75.5
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.0e-84 316.2 239 70.7
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 6.7e-84 315.1 234 73.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.7e-84 315.1 233 74.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.1e-83 314.3 201 81.6
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.9e-83 313.5 212 80.7
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 2.5e-83 313.2 229 72.5
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 2.5e-83 313.2 227 73.6
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.3e-83 312.8 203 83.3
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 3.3e-83 312.8 233 74.7
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 7.4e-83 311.6 236 72.0
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 9.6e-83 311.2 203 80.8
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.3e-82 310.8 197 83.8
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.1e-82 310.1 212 79.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.1e-82 310.1 237 71.3
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 2.8e-82 309.7 215 77.7
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 4.8e-82 308.9 236 72.0
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 8.2e-82 308.1 211 75.4
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.4e-81 306.6 240 71.7
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 3.1e-81 306.2 212 77.4
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 5.3e-81 305.4 236 70.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.3e-81 305.4 236 70.8
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 5.3e-81 305.4 212 77.8
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.9e-81 305.1 232 74.6
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 6.9e-81 305.1 212 77.4
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 6.9e-81 305.1 204 79.4
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 9.0e-81 304.7 208 76.9
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.2e-80 304.3 218 75.7
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 2.6e-80 303.1 236 70.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.0e-79 301.2 194 80.9
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.3e-79 300.8 237 71.3
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.7e-79 300.4 205 77.6
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.7e-79 300.4 229 70.7
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.2e-79 300.1 201 79.6
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.2e-79 300.1 246 67.1
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 2.2e-79 300.1 201 77.6
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.2e-79 300.1 215 74.0
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.9e-79 299.7 224 72.8
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 5.0e-79 298.9 233 70.0
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 5.0e-79 298.9 254 67.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 6.5e-79 298.5 230 71.3
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.4e-78 297.4 201 79.1
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.5e-78 296.6 230 70.4
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.5e-78 296.6 229 70.7
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 3.2e-78 296.2 236 69.1
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 3.2e-78 296.2 279 61.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.2e-78 296.2 224 72.3
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.2e-78 295.8 233 69.5
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 4.2e-78 295.8 236 68.6
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 5.5e-78 295.4 184 84.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 5.5e-78 295.4 233 70.0
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 7.1e-78 295.0 203 75.4
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 7.1e-78 295.0 231 69.3
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.1e-78 295.0 203 76.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 7.1e-78 295.0 260 66.2
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 9.3e-78 294.7 203 76.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 2.7e-77 293.1 207 74.9
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.0e-76 291.2 229 69.4
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.0e-76 291.2 203 74.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.3e-76 290.8 189 79.4
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.3e-76 290.8 203 75.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.8e-76 290.4 231 68.4
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 1.8e-76 290.4 231 68.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.8e-76 290.4 203 74.4
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.3e-76 290.0 225 69.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 3.0e-76 289.7 206 74.8
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 3.0e-76 289.7 231 68.4
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.9e-76 289.3 230 68.7
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 6.7e-76 288.5 227 69.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 8.7e-76 288.1 210 72.9
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.1e-75 287.7 232 67.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-75 287.7 227 69.6
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-75 287.7 231 68.0
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 4.3e-75 285.8 231 68.8
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 5.7e-75 285.4 206 73.8
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 7.4e-75 285.0 231 66.7
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-74 284.3 231 67.1
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.8e-74 283.1 233 67.4
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 3.7e-74 282.7 231 66.7
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 1.8e-73 280.4 231 68.0
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 2.4e-73 280.0 239 65.3
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.9e-70 270.4 169 87.6
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 7.2e-70 268.5 169 87.0
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 7.9e-69 265.0 186 74.2
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.1e-68 262.3 171 83.0
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.0e-67 260.4 170 80.0
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 3.4e-64 249.6 165 80.6
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 7.7e-64 248.4 183 70.5
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.3e-63 247.7 183 70.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.9e-63 246.5 184 68.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.3e-60 236.9 159 79.9
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.2e-54 215.3 158 78.5
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 1.6e-53 214.2 156 70.5
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.8e-50 203.4 145 73.8
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 8.8e-44 181.8 202 51.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 1.5e-35 154.5 140 60.0
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 5.7e-35 152.5 150 58.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 1.8e-33 147.5 187 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 3.1e-33 146.7 120 68.3
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 4.1e-33 146.4 204 47.1
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.1e-29 134.0 104 69.2
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 6.4e-26 122.5 78 79.5
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 2.3e-23 114.0 91 64.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.7e-15 87.8 68 63.2
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 1.7e-15 87.8 68 63.2
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-14 84.7 86 53.5
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.9e-14 84.3 104 50.0
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 4.3e-14 83.2 128 43.0
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 5.6e-14 82.8 104 49.0
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 5.6e-14 82.8 104 49.0
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 5.6e-14 82.8 104 49.0
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 7.3e-14 82.4 104 49.0
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 7.3e-14 82.4 104 49.0
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 9.5e-14 82.0 104 48.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-13 81.6 104 49.0
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 1.6e-13 81.3 104 48.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.1e-13 80.9 91 56.0
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.4e-12 78.2 80 56.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 2.3e-12 77.4 64 64.1
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 3.1e-12 77.0 63 65.1
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.2e-11 75.1 106 47.2
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 2.6e-11 73.9 76 56.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.9e-09 67.8 67 62.7
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 3.5e-08 63.5 57 59.6
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 6.0e-08 62.8 55 58.2
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.9e-07 60.1 178 30.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 8.6e-07 58.9 45 64.4
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 8.6e-07 58.9 39 71.8


User provided reference genes

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