Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 6.8e-60 233.8 118 100.0
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.2e-42 175.6 97 88.7
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.2e-42 175.6 97 87.6
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 6.0e-40 167.5 97 82.5
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 6.0e-40 167.5 97 80.4
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.3e-39 166.4 95 81.1
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.7e-39 166.0 95 82.1
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 3.9e-39 164.9 95 82.1
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 3.9e-39 164.9 95 82.1
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.5e-38 162.9 97 82.5
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 2.5e-38 162.2 97 78.4
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 7.3e-38 160.6 97 77.3
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 9.5e-38 160.2 97 79.4
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 2.8e-37 158.7 97 76.3
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 3.6e-37 158.3 97 78.4
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.1e-36 156.8 97 77.3
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 3.1e-36 155.2 97 76.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 3.1e-36 155.2 97 74.2
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 3.1e-36 155.2 97 74.2
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 3.1e-36 155.2 95 76.8
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 5.2e-36 154.5 91 81.3
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 8.9e-36 153.7 97 74.2
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.5e-35 152.9 96 74.0
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 5.8e-35 151.0 89 80.9
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 1.7e-34 149.4 90 80.0
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.8e-34 148.3 90 78.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 4.9e-34 147.9 97 72.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 8.4e-34 147.1 91 75.8
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.4e-34 147.1 91 75.8
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.1e-33 146.7 91 75.8
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.4e-33 146.4 90 76.7
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.9e-33 146.0 91 75.8
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 3.2e-33 145.2 90 74.4
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 4.1e-33 144.8 83 79.5
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 4.1e-33 144.8 96 74.0
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 4.1e-33 144.8 96 72.9
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.1e-33 144.8 91 74.7
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 4.1e-33 144.8 90 78.9
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 4.1e-33 144.8 90 77.8
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 5.4e-33 144.4 90 75.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 5.4e-33 144.4 92 78.3
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 5.4e-33 144.4 87 75.9
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 7.1e-33 144.1 98 72.4
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 7.1e-33 144.1 95 74.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 7.1e-33 144.1 97 71.1
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 9.2e-33 143.7 93 73.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.2e-32 143.3 93 73.1
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.2e-32 143.3 90 74.4
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-32 143.3 98 70.4
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-32 143.3 98 70.4
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.6e-32 142.9 90 76.7
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.6e-32 142.9 95 75.8
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 2.1e-32 142.5 83 80.7
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.1e-32 142.5 96 74.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.1e-32 142.5 90 76.7
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.1e-32 142.5 92 73.9
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.1e-32 142.5 94 72.3
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.1e-32 142.5 90 75.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.1e-32 142.5 96 75.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.5e-32 141.7 90 76.7
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 3.5e-32 141.7 91 74.7
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 3.5e-32 141.7 90 71.1
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 3.5e-32 141.7 92 72.8
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 4.6e-32 141.4 93 73.1
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 6.0e-32 141.0 90 74.4
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 6.0e-32 141.0 90 74.4
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 6.0e-32 141.0 94 69.1
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 7.8e-32 140.6 90 74.4
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 7.8e-32 140.6 92 71.7
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 7.8e-32 140.6 90 73.3
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.0e-31 140.2 93 74.2
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.3e-31 139.8 97 69.1
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.3e-31 139.8 92 70.7
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.3e-31 139.8 92 70.7
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.3e-31 139.8 97 70.1
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 1.3e-31 139.8 89 76.4
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.3e-31 139.8 96 72.9
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 1.7e-31 139.4 90 74.4
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.3e-31 139.0 92 70.7
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.3e-31 139.0 92 71.7
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.0e-31 138.7 92 69.6
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 3.0e-31 138.7 94 70.2
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 3.0e-31 138.7 90 71.1
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 3.9e-31 138.3 92 71.7
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 3.9e-31 138.3 93 75.3
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 5.1e-31 137.9 91 73.6
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 5.1e-31 137.9 89 75.3
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 5.1e-31 137.9 95 67.4
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 6.6e-31 137.5 91 74.7
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 6.6e-31 137.5 97 68.0
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 6.6e-31 137.5 90 73.3
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.1e-30 136.7 95 73.7
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-30 136.0 92 70.7
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.9e-30 136.0 92 70.7
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-30 136.0 92 70.7
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.9e-30 136.0 92 70.7
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 2.5e-30 135.6 90 71.1
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 2.5e-30 135.6 91 73.6
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 2.5e-30 135.6 91 73.6
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.5e-30 135.6 93 69.9
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 2.5e-30 135.6 94 70.2
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 3.3e-30 135.2 92 70.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 3.3e-30 135.2 89 73.0
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 3.3e-30 135.2 90 68.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.3e-30 134.8 94 70.2
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 5.6e-30 134.4 91 72.5
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-29 132.1 87 73.6
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-29 132.1 87 73.6
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-29 132.1 87 73.6
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-29 132.1 87 73.6
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.8e-29 132.1 87 73.6
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 3.6e-29 131.7 92 70.7
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.1e-28 130.2 97 64.9
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.8e-28 129.4 96 65.6
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.1e-28 128.6 96 65.6
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 6.9e-28 127.5 90 67.8
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 7.6e-27 124.0 85 68.2
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.2e-26 122.5 92 66.3
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 4.9e-26 121.3 87 65.5
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 4.9e-26 121.3 88 67.0
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.4e-26 120.9 72 77.8
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 6.4e-26 120.9 91 62.6
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 4.2e-25 118.2 98 62.2
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 6.6e-23 110.9 94 55.3
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 4.3e-22 108.2 86 62.8
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 4.8e-21 104.8 88 52.3
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 6.2e-21 104.4 86 64.0
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 3.1e-20 102.1 68 72.1
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.1e-20 102.1 89 49.4
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 9.0e-20 100.5 65 73.8
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.0e-20 100.5 92 56.5
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.1e-14 83.6 92 50.0
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.1e-09 67.0 92 45.7
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 3.2e-09 65.5 39 79.5


User provided reference genes

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