Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 2.5e-156 557.0 290 100.0
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 6.3e-91 339.7 285 62.8
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 7.2e-87 326.2 296 59.8
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 6.3e-83 313.2 280 58.2
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 1.2e-78 298.9 282 57.4
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 2.7e-78 297.7 291 58.4
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 7.9e-78 296.2 291 57.7
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 1.8e-77 295.0 280 55.4
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.5e-76 292.0 282 56.7
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 7.4e-76 289.7 281 55.5
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 1.3e-75 288.9 281 59.4
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 1.4e-74 285.4 281 54.1
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 2.4e-74 284.6 231 61.9
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 1.2e-73 282.3 280 56.1
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 2.2e-72 278.1 286 53.5
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 5.0e-72 276.9 288 53.5
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 8.5e-72 276.2 286 53.1
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.9e-71 275.0 288 53.1
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 3.2e-71 274.2 286 53.1
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 5.5e-71 273.5 231 61.0
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 2.7e-70 271.2 287 51.9
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 3.6e-70 270.8 279 53.0
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 4.7e-70 270.4 227 59.5
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 8.8e-69 266.2 243 57.6
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 1.5e-68 265.4 224 58.9
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 1.3e-67 262.3 243 57.6
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 3.7e-67 260.8 245 57.6
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 6.3e-67 260.0 278 52.2
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 6.3e-67 260.0 231 58.4
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 8.2e-67 259.6 282 50.7
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 9.1e-66 256.1 242 57.0
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 1.2e-65 255.8 243 56.8
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 1.6e-65 255.4 243 55.1
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 1.7e-64 251.9 268 52.6
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 2.9e-64 251.1 243 56.0
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 2.9e-64 251.1 227 55.9
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 8.5e-64 249.6 227 57.7
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 1.5e-63 248.8 206 61.2
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 1.9e-63 248.4 285 48.8
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 2.5e-63 248.1 251 54.6
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 2.5e-63 248.1 241 54.4
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 5.5e-63 246.9 285 48.8
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 2.7e-62 244.6 288 48.6
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 8.0e-62 243.0 267 52.1
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 7.5e-60 236.5 292 49.0
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 3.7e-59 234.2 238 54.2
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 6.3e-59 233.4 291 46.7
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 8.3e-59 233.0 291 46.7
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 1.4e-58 232.3 239 52.3
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 1.8e-58 231.9 284 50.4
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 3.1e-58 231.1 243 51.9
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 5.3e-58 230.3 296 45.6
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 2.7e-57 228.0 239 50.6
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 3.5e-57 227.6 238 52.5
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 7.7e-57 226.5 285 46.7
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 7.7e-57 226.5 237 53.2
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 7.7e-57 226.5 289 47.1
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 3.8e-56 224.2 240 49.6
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 3.8e-56 224.2 243 50.2
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 1.1e-55 222.6 226 54.0
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.5e-55 221.5 291 44.7
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 3.2e-55 221.1 288 46.9
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 9.4e-55 219.5 248 50.4
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 1.2e-54 219.2 237 51.9
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 2.7e-54 218.0 228 49.6
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 4.7e-54 217.2 232 50.9
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 4.7e-54 217.2 287 44.6
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 1.0e-53 216.1 244 52.5
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 3.0e-53 214.5 297 45.8
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 3.0e-53 214.5 236 50.4
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 8.8e-53 213.0 201 54.7
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 4.4e-52 210.7 245 47.8
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.7e-51 207.6 238 47.9
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 3.7e-51 207.6 238 47.9
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 4.8e-51 207.2 228 47.4
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 4.1e-50 204.1 169 60.4
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 1.7e-48 198.7 282 45.4
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 5.0e-48 197.2 282 45.0
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 3.0e-45 188.0 282 43.3
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 1.3e-43 182.6 179 53.1
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 5.6e-39 167.2 202 46.0
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 1.0e-37 162.9 196 45.4
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 1.8e-37 162.2 195 46.7
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 5.2e-37 160.6 212 44.3
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 5.2e-37 160.6 113 66.4
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 2.6e-36 158.3 195 46.2
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 2.6e-36 158.3 182 48.4
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 9.2e-34 149.8 122 59.0
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 1.6e-33 149.1 273 37.7
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 2.8e-30 138.3 136 52.9
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 3.6e-30 137.9 124 54.8
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.1e-29 136.3 264 34.5
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 5.8e-20 104.0 68 70.6
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 1.6e-17 95.9 184 38.0
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 9.6e-15 86.7 116 40.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.8e-14 85.1 245 29.8
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 8.1e-14 83.6 186 32.8
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 8.1e-14 83.6 75 53.3
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.6e-12 78.6 186 33.9
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 3.4e-12 78.2 94 42.6
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 9.9e-12 76.6 192 28.6
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 1.7e-11 75.9 185 31.9
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.1e-10 73.2 100 39.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.9e-10 72.4 204 28.9
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 3.2e-10 71.6 183 28.4
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 3.2e-10 71.6 189 26.5
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.2e-10 71.2 189 28.0
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.1e-10 70.5 204 28.4
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.2e-09 69.7 192 29.7
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.2e-09 69.7 184 29.3
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.6e-09 69.3 238 28.2
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 1.6e-09 69.3 190 28.9
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 2.7e-09 68.6 237 25.3
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 6.0e-09 67.4 163 33.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 7.8e-09 67.0 191 28.3
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 7.8e-09 67.0 199 26.6
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 1.0e-08 66.6 105 37.1
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.0e-08 66.6 262 25.2
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 1.3e-08 66.2 210 29.0
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 2.3e-08 65.5 164 29.3
Sabra16G0170400 Salix brachista HOM05D007455 ORTHO05D009431 2.3e-08 65.5 102 37.3
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.3e-08 65.5 179 28.5
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 3.0e-08 65.1 178 29.8
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.0e-08 65.1 191 29.8
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.9e-08 64.7 186 28.5
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 3.9e-08 64.7 191 29.8
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 5.1e-08 64.3 191 31.9
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 6.6e-08 63.9 240 25.0
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.1e-07 63.2 177 29.4
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 1.5e-07 62.8 190 27.9
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 1.5e-07 62.8 240 24.6
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 1.5e-07 62.8 122 30.3
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.5e-07 62.8 181 28.7
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.9e-07 62.4 188 29.3
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 1.9e-07 62.4 186 28.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 2.5e-07 62.0 240 24.6
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 2.5e-07 62.0 163 31.9
Cpa.g.sc116.47 Carica papaya HOM05D007291 ORTHO05D009038 3.3e-07 61.6 226 23.9
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 3.3e-07 61.6 201 28.9
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 3.3e-07 61.6 207 29.5
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 3.3e-07 61.6 211 26.1
Sc08g0000170 Simmondsia chinensis HOM05D008657 ORTHO05D010869 4.3e-07 61.2 219 24.7
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 4.3e-07 61.2 229 26.6
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.6e-07 60.8 102 35.3
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 7.3e-07 60.5 189 27.5
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 7.3e-07 60.5 91 37.4
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 7.3e-07 60.5 187 28.3
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 7.3e-07 60.5 182 26.9
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 9.6e-07 60.1 102 33.3
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 1.3e-06 59.7 185 27.6
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 1.3e-06 59.7 189 27.5
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 1.6e-06 59.3 233 24.0
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.6e-06 59.3 179 27.4
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 2.1e-06 58.9 119 31.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 2.1e-06 58.9 180 27.8
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 2.1e-06 58.9 201 23.4
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 2.1e-06 58.9 237 26.2
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 2.1e-06 58.9 182 27.5
MBI19_g17433_MAGBIO Magnolia biondii HOM05D007083 ORTHO05D008801 2.8e-06 58.5 216 28.2
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 2.8e-06 58.5 210 26.2
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 3.6e-06 58.2 198 27.8
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 3.6e-06 58.2 183 27.3
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 3.6e-06 58.2 256 25.0
Lsat_1_v5_gn_2_68461 Lactuca sativa HOM05D007545 ORTHO05D009579 3.6e-06 58.2 246 24.8
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 3.6e-06 58.2 186 25.8
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.6e-06 58.2 191 24.1
Lj2g0016301 Lotus japonicus HOM05D007291 ORTHO05D009038 6.2e-06 57.4 228 25.0
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 6.2e-06 57.4 215 25.1
PGSC0003DMG401009622 Solanum tuberosum HOM05D007455 ORTHO05D009431 6.2e-06 57.4 205 25.9
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 8.1e-06 57.0 210 27.6
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 8.1e-06 57.0 192 27.1


User provided reference genes

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