Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.8e-254 882.5 588 100.0
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.1e-203 713.8 591 75.3
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.1e-146 523.5 600 52.0
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.6e-146 522.7 602 51.8
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.7e-143 513.8 598 52.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 1.3e-140 504.2 582 51.4
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 8.7e-132 474.9 574 48.6
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 5.1e-124 449.1 601 47.3
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 6.7e-124 448.7 591 47.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 3.0e-116 423.3 590 44.2
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 3.9e-116 422.9 592 44.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 8.8e-116 421.8 587 45.0
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 2.0e-115 420.6 576 45.7
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 5.7e-115 419.1 587 44.1
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.7e-114 417.5 579 45.1
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 6.3e-114 415.6 590 44.6
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.4e-113 414.5 582 43.6
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 9.1e-113 411.8 579 43.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 7.7e-112 408.7 594 44.1
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.3e-111 407.9 587 45.3
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.9e-111 406.8 571 44.7
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 5.0e-111 406.0 576 44.1
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 4.2e-110 402.9 589 43.0
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 5.5e-110 402.5 578 43.1
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 7.2e-110 402.1 605 42.3
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.6e-109 401.0 569 45.2
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 7.9e-109 398.7 597 43.0
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.0e-108 398.3 582 43.6
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.8e-108 397.5 585 43.6
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.3e-108 397.1 574 42.5
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 8.8e-108 395.2 583 43.9
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 7.4e-107 392.1 591 43.7
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.3e-106 391.3 589 43.5
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.7e-106 391.0 586 43.9
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.8e-106 389.4 591 43.5
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 8.2e-106 388.7 584 44.2
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-105 388.3 572 42.7
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.1e-105 386.3 562 43.6
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 5.3e-105 386.0 584 43.3
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 7.0e-105 385.6 597 40.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.2e-104 384.8 584 43.7
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.0e-104 384.0 572 42.5
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.0e-104 384.0 563 43.9
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 4.5e-104 382.9 565 43.2
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 7.7e-104 382.1 556 42.6
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 7.7e-104 382.1 572 42.3
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 1.7e-103 380.9 572 41.6
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.7e-103 380.9 578 43.1
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.7e-103 380.9 556 42.6
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 2.2e-103 380.6 308 64.9
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 6.5e-103 379.0 587 42.4
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 8.5e-103 378.6 583 42.4
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.1e-102 378.3 579 42.8
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.9e-102 377.5 569 41.1
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 1.2e-101 374.8 579 42.1
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 2.1e-101 374.0 572 41.8
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.1e-101 374.0 572 41.4
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 2.1e-101 374.0 542 41.0
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.1e-101 372.5 572 41.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 6.1e-101 372.5 579 42.0
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.0e-100 371.7 576 42.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.4e-100 371.3 576 42.0
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.8e-100 370.9 584 40.8
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-100 370.9 571 41.2
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.3e-100 370.5 577 43.2
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.3e-100 370.5 585 41.9
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.6e-99 367.1 576 40.8
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 5.7e-99 365.9 597 39.2
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.4e-99 365.5 569 39.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 9.7e-99 365.2 540 42.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.8e-98 363.6 587 41.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.8e-98 362.8 569 39.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-97 361.3 569 38.8
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 4.1e-97 359.8 574 40.1
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 7.0e-97 359.0 593 39.8
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.5e-96 356.7 583 39.8
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.3e-95 354.8 587 40.2
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 2.2e-95 354.0 583 39.8
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.5e-95 352.4 576 40.1
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 8.5e-95 352.1 585 40.5
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.1e-94 351.7 579 40.1
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 4.2e-94 349.7 596 39.9
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 5.5e-94 349.4 577 39.7
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 5.5e-94 349.4 578 44.3
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 7.2e-94 349.0 574 39.9
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 3.6e-93 346.7 572 40.2
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 4.7e-93 346.3 587 39.7
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 1.4e-92 344.7 579 40.8
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.8e-92 344.4 579 39.6
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.8e-92 344.4 569 39.7
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 3.4e-91 340.1 582 39.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 3.4e-91 340.1 311 57.6
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.4e-91 339.7 582 39.3
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 1.7e-90 337.8 293 60.8
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.2e-90 337.4 582 39.2
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.7e-87 327.8 562 39.7
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-87 326.2 560 39.3
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 6.5e-87 325.9 585 37.8
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 6.5e-87 325.9 573 38.0
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.9e-86 324.3 571 38.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.5e-86 322.8 560 37.0
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 2.1e-85 320.9 575 39.0
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.1e-85 320.9 573 35.6
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 3.6e-85 320.1 270 60.0
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 3.0e-84 317.0 566 35.9
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.5e-83 314.7 568 36.6
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.0e-83 314.3 258 61.6
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 2.0e-83 314.3 588 37.8
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-83 313.5 257 61.5
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.4e-83 313.5 257 61.5
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 6.3e-82 309.3 586 38.4
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 1.6e-80 304.7 263 60.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.3e-79 301.6 582 37.1
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 1.3e-79 301.6 587 36.6
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 8.6e-79 298.9 265 58.9
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 2.1e-77 294.3 521 38.6
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 3.6e-77 293.5 556 37.4
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 2.0e-75 287.7 492 38.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-68 265.0 554 34.8
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.8e-61 240.7 460 38.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.4e-57 228.4 567 30.3
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 5.6e-54 216.5 580 32.1
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 2.2e-50 204.5 250 43.2
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.9e-50 204.1 136 72.1
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.9e-50 204.1 248 46.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 8.4e-50 202.6 250 42.8
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.0e-43 181.4 217 43.8
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 5.4e-41 173.3 250 41.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 3.5e-40 170.6 247 40.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 6.6e-39 166.4 250 39.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 2.5e-38 164.5 278 34.9
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.4e-33 146.7 244 37.7
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 6.2e-29 133.3 181 45.3
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 8.1e-29 132.9 181 44.8
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.1e-28 131.0 103 64.1
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 6.9e-28 129.8 237 33.8
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-25 122.5 106 58.5
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.4e-25 121.3 436 27.1
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 3.2e-25 120.9 149 51.7
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.1e-22 112.5 431 27.1
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.4e-20 104.8 96 57.3
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.1e-20 104.4 143 46.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.0e-20 104.0 138 47.8
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.2e-19 102.4 135 47.4
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 5.8e-19 100.1 188 30.9
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-18 99.4 129 48.8
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.0e-18 99.4 129 48.8
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.0e-18 99.4 286 29.0
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-17 95.9 145 42.1
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.9e-17 95.1 141 46.1
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.9e-17 95.1 244 29.1
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 4.6e-16 90.5 154 42.9
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 6.0e-16 90.1 234 28.6
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 6.7e-15 86.7 74 59.5
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 2.5e-14 84.7 114 41.2
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 2.8e-13 81.3 276 26.1
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.5e-10 70.1 83 48.2
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.3e-09 66.2 92 44.6
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.7e-08 64.7 92 44.6
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-06 58.9 60 55.0


User provided reference genes

Program Settings