Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0141900 Rhododendron simsii HOM05D006897 ORTHO05D008825 2.5e-93 345.5 184 100.0
Dinv35807 Davidia involucrata HOM05D006897 ORTHO05D008825 1.9e-16 90.1 50 88.0
QL07p042737 Quercus lobata HOM05D006897 ORTHO05D008825 4.2e-16 89.0 52 80.8
MSTRG.5772 Avicennia marina HOM05D006897 ORTHO05D008825 4.7e-15 85.5 49 73.5
Cc06_g04460 Coffea canephora HOM05D006897 ORTHO05D008825 4.7e-15 85.5 50 80.0
Oeu041483.1 Olea europaea HOM05D006897 ORTHO05D008825 1.4e-14 84.0 49 79.6
Migut.J00586 Erythranthe guttata HOM05D006897 ORTHO05D008825 2.3e-14 83.2 50 78.0
unitig_27.g25382 Utricularia gibba HOM05D006897 ORTHO05D008825 2.3e-14 83.2 49 73.5
CSS0029455 Camellia sinensis var. sinensis HOM05D006897 ORTHO05D008825 3.0e-14 82.8 56 76.8
Manes.08G012300 Manihot esculenta HOM05D006897 ORTHO05D008825 3.0e-14 82.8 49 81.6
GSVIVG01033669001 Vitis vinifera HOM05D006897 ORTHO05D008825 3.0e-14 82.8 50 78.0
Actinidia31321 Actinidia chinensis HOM05D006897 ORTHO05D008825 4.4e-13 79.0 54 72.2
MBI04_g13674_MAGBIO Magnolia biondii HOM05D000468 ORTHO05D000548 4.4e-13 79.0 49 73.5
Nn2g13847 Nelumbo nucifera HOM05D006897 ORTHO05D008825 4.4e-13 79.0 54 72.2
Cfa017644 Carpinus fangiana HOM05D006897 ORTHO05D008825 5.7e-13 78.6 51 70.6
Haze_20509 Corylus avellana HOM05D006897 ORTHO05D008825 5.7e-13 78.6 51 70.6
Cpa.g.sc92.100 Carica papaya HOM05D006897 ORTHO05D008825 9.7e-13 77.8 50 66.0
TAR623G0762 Trochodendron aralioides HOM05D000468 ORTHO05D000548 1.3e-12 77.4 43 81.4
Duzib093G0551 Durio zibethinus HOM05D006897 ORTHO05D008825 1.7e-12 77.0 49 75.5
Nn6g35243 Nelumbo nucifera HOM05D006897 ORTHO05D008825 2.2e-12 76.6 47 74.5
SGA_v2.0_scaffold40G15485 Striga asiatica HOM05D006897 ORTHO05D008825 2.8e-12 76.3 49 75.5
TWI74G0074 Tripterygium wilfordii HOM05D006897 ORTHO05D008825 2.8e-12 76.3 49 71.4
AUR62026928 Chenopodium quinoa HOM05D006897 ORTHO05D008825 3.7e-12 75.9 52 69.2
Lsat_1_v5_gn_6_28260 Lactuca sativa HOM05D006897 ORTHO05D008825 6.3e-12 75.1 50 70.0
Thecc.05G070500 Theobroma cacao HOM05D006897 ORTHO05D008825 8.2e-12 74.7 49 73.5
COL.COLO4_26923 Corchorus olitorius HOM05D006897 ORTHO05D008825 1.1e-11 74.3 49 69.4
PGSC0003DMG400028283 Solanum tuberosum HOM05D006897 ORTHO05D008825 1.1e-11 74.3 45 71.1
CiPaw.09G169900 Carya illinoinensis HOM05D006897 ORTHO05D008825 1.4e-11 73.9 51 68.6
AUR62041582 Chenopodium quinoa HOM05D006897 ORTHO05D008825 1.4e-11 73.9 52 69.2
Hund26628 Selenicereus undatus HOM05D006897 ORTHO05D008825 1.4e-11 73.9 49 65.3
Sopen10g033350 Solanum pennellii HOM05D006897 ORTHO05D008825 1.4e-11 73.9 45 68.9
arahy.Tifrunner.gnm1.ann1.12U4ZA Arachis hypogaea HOM05D006897 ORTHO05D008825 1.8e-11 73.6 52 73.1
Gohir.D11G342700 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.8e-11 73.6 49 73.5
Gorai.007G372800 Gossypium raimondii HOM05D006897 ORTHO05D008825 1.8e-11 73.6 49 73.5
Aqoxy1G01120 Aquilegia oxysepala HOM05D006897 ORTHO05D008825 2.4e-11 73.2 50 72.0
EL10Ac7g16667 Beta vulgaris HOM05D006897 ORTHO05D008825 2.4e-11 73.2 49 67.3
Nitab4.5_0000527g0030 Nicotiana tabacum HOM05D006897 ORTHO05D008825 3.1e-11 72.8 49 65.3
Nitab4.5_0009369g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 3.1e-11 72.8 49 65.3
Ca_08918_v3 Cicer arietinum L. HOM05D006897 ORTHO05D008825 4.1e-11 72.4 50 64.0
Sabra06G0096400 Salix brachista HOM05D006897 ORTHO05D008825 5.3e-11 72.0 51 68.6
Ciclev10013772m.g Citrus clementina HOM05D006897 ORTHO05D008825 7.0e-11 71.6 51 66.7
Nitab4.5_0002626g0030 Nicotiana tabacum HOM05D000468 ORTHO05D000548 7.0e-11 71.6 50 66.0
Gohir.A11G323600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 9.1e-11 71.2 49 71.4
Eucgr.A01649 Eucalyptus grandis HOM05D006897 ORTHO05D008825 1.2e-10 70.9 46 73.9
Phvul.001G180700 Phaseolus vulgaris HOM05D006897 ORTHO05D008825 1.6e-10 70.5 52 67.3
RcHm_v2.0_Chr3g0470611 Rosa chinensis HOM05D006897 ORTHO05D008825 1.6e-10 70.5 52 67.3
Potri.006G122200 Populus trichocarpa HOM05D006897 ORTHO05D008825 2.0e-10 70.1 51 66.7
Lj3A989T53 Lonicera japonica HOM05D006897 ORTHO05D008825 2.6e-10 69.7 58 62.1
ECA233G4308 Erigeron canadensis HOM05D000468 ORTHO05D000548 3.5e-10 69.3 43 74.4
PSO339G3187 Papaver somniferum HOM05D006897 ORTHO05D008825 3.5e-10 69.3 50 68.0
Prupe.7G126900 Prunus persica HOM05D006897 ORTHO05D008825 3.5e-10 69.3 45 71.1
Sed0016332 Sechium edule HOM05D006897 ORTHO05D008825 4.5e-10 68.9 53 66.0
VMungo1383G3501 Vigna mungo HOM05D006897 ORTHO05D008825 4.5e-10 68.9 52 65.4
TPR.G32809 Trifolium pratense HOM05D006897 ORTHO05D008825 1.0e-09 67.8 49 63.3
Gorai.009G413700 Gossypium raimondii HOM05D006897 ORTHO05D008825 1.3e-09 67.4 51 62.7
MD04G1090000 Malus domestica HOM05D006897 ORTHO05D008825 1.3e-09 67.4 52 63.5
Sed0006529 Sechium edule HOM05D006897 ORTHO05D008825 1.3e-09 67.4 54 61.1
Atru.chr8.1762 Acer truncatum HOM05D006897 ORTHO05D008825 1.7e-09 67.0 45 62.2
FAN14G2109 Fragaria x ananassa HOM05D006897 ORTHO05D008825 1.7e-09 67.0 51 60.8
Gohir.D04G109600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.7e-09 67.0 48 64.6
Lalb_Chr01g0018621 Lupinus albus HOM05D006897 ORTHO05D008825 1.7e-09 67.0 53 60.4
MD12G1108500 Malus domestica HOM05D006897 ORTHO05D008825 2.2e-09 66.6 51 64.7
PSO063G5108 Papaver somniferum HOM05D006897 ORTHO05D008825 2.9e-09 66.2 50 66.0
Sc02g0001520 Simmondsia chinensis HOM05D006897 ORTHO05D008825 2.9e-09 66.2 49 59.2
FAN09G4221 Fragaria x ananassa HOM05D006897 ORTHO05D008825 3.8e-09 65.9 51 60.8
Glyma.19G185800 Glycine max HOM05D006897 ORTHO05D008825 3.8e-09 65.9 50 66.0
Lj1g0004142 Lotus japonicus HOM05D006897 ORTHO05D008825 3.8e-09 65.9 54 63.0
FvH4_6g16650 Fragaria vesca HOM05D006897 ORTHO05D008825 5.0e-09 65.5 51 58.8
FAN05G5588 Fragaria x ananassa HOM05D006897 ORTHO05D008825 5.0e-09 65.5 51 58.8
HanXRQChr13g0400941 Helianthus annuus HOM05D006897 ORTHO05D008825 5.0e-09 65.5 50 60.0
Peaxi162Scf00311g01426 Petunia axillaris HOM05D006897 ORTHO05D008825 5.0e-09 65.5 45 64.4
FAN05G2962 Fragaria x ananassa HOM05D006897 ORTHO05D008825 6.5e-09 65.1 51 56.9
ClCG10G019960 Citrullus lanatus HOM05D006897 ORTHO05D008825 1.1e-08 64.3 49 63.3
Carub.0004s1868 Capsella rubella HOM05D006897 ORTHO05D008825 1.5e-08 63.9 49 61.2
AL4G33030 Arabidopsis lyrata HOM05D006897 ORTHO05D008825 2.5e-08 63.2 49 63.3
Glyma.03G185300 Glycine max HOM05D006897 ORTHO05D008825 2.5e-08 63.2 50 62.0
Medtr0050s0130 Medicago truncatula HOM05D006897 ORTHO05D008825 2.5e-08 63.2 41 65.9
Medtr7g102930 Medicago truncatula HOM05D006897 ORTHO05D008825 2.5e-08 63.2 41 65.9
Sp4g19090 Schrenkiella parvula HOM05D006897 ORTHO05D008825 3.2e-08 62.8 49 59.2
A05p09040 Brassica napus HOM05D006897 ORTHO05D008825 4.2e-08 62.4 49 59.2
BraA05t19865Z Brassica rapa HOM05D006897 ORTHO05D008825 4.2e-08 62.4 49 59.2
AT2G36835 Arabidopsis thaliana HOM05D006897 ORTHO05D008825 5.5e-08 62.0 49 61.2
Thhalv10017426m.g Eutrema salsugineum HOM05D006897 ORTHO05D008825 5.5e-08 62.0 49 59.2
Psat3g039920 Pisum sativum HOM05D006897 ORTHO05D008825 5.5e-08 62.0 41 65.9
CDE05G1066 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 7.2e-08 61.6 41 65.9
Nitab4.5_0003762g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 7.2e-08 61.6 49 55.1
CDE02G4617 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 9.4e-08 61.2 41 63.4
MELO3C009375.2 Cucumis melo HOM05D006897 ORTHO05D008825 9.4e-08 61.2 49 59.2
CsaV3_3G036130 Cucumis sativus L. HOM05D006897 ORTHO05D008825 1.2e-07 60.8 49 61.2
Aa31LG5G22050 Aethionema arabicum HOM05D006897 ORTHO05D008825 1.6e-07 60.5 49 61.2
BcaC02g11805 Brassica carinata HOM05D006897 ORTHO05D008825 2.1e-07 60.1 47 61.7
C04p11190 Brassica napus HOM05D006897 ORTHO05D008825 2.1e-07 60.1 47 61.7
BolC4t22765H Brassica oleracea HOM05D006897 ORTHO05D008825 2.1e-07 60.1 47 61.7
BcaB02g09328 Brassica carinata HOM05D006897 ORTHO05D008825 4.7e-07 58.9 50 60.0
SalBow3G3382 Salvia bowleyana HOM05D006897 ORTHO05D008825 1.4e-06 57.4 35 71.4
HPP92_010447 Vanilla planifolia HOM05D006897 ORTHO05D008825 1.4e-06 57.4 49 63.3
CARHR131290 Cardamine hirsuta HOM05D006897 ORTHO05D008825 2.3e-06 56.6 52 53.8
Nitab4.5_0000063g0200 Nicotiana tabacum HOM05D006897 ORTHO05D008825 3.0e-06 56.2 44 61.4
HPP92_010241 Vanilla planifolia HOM05D006897 ORTHO05D008825 4.0e-06 55.8 49 61.2
arahy.Tifrunner.gnm1.ann1.Y93F21 Arachis hypogaea HOM05D006897 ORTHO05D008825 5.2e-06 55.5 38 76.3


User provided reference genes

Program Settings