Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.7e-130 468.8 253 100.0
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.1e-35 154.5 168 64.9
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 3.5e-29 132.9 175 52.0
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 6.6e-28 128.6 176 50.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 9.5e-27 124.8 179 49.7
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.2e-26 124.4 177 49.7
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 8.9e-25 118.2 175 48.0
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.6e-24 116.7 178 47.2
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 5.8e-24 115.5 172 46.5
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 5.8e-24 115.5 178 47.2
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 2.9e-23 113.2 178 47.2
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 8.3e-23 111.7 177 52.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.1e-22 111.3 179 46.4
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 1.4e-22 110.9 180 48.3
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 2.4e-22 110.2 146 51.4
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 2.4e-22 110.2 178 47.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 3.2e-22 109.8 176 47.2
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 3.2e-22 109.8 146 50.7
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.1e-22 109.4 195 43.1
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 7.1e-22 108.6 190 46.3
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 7.1e-22 108.6 164 47.6
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.1e-22 108.6 186 43.5
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.1e-22 108.6 188 47.3
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 7.1e-22 108.6 183 44.3
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.6e-21 107.5 175 50.3
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.1e-21 107.1 178 46.6
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 2.1e-21 107.1 175 50.9
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 3.5e-21 106.3 175 50.3
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.6e-21 105.9 188 44.1
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 4.6e-21 105.9 178 44.4
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 4.6e-21 105.9 178 45.5
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 6.0e-21 105.5 177 45.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 7.8e-21 105.1 147 49.0
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.0e-20 104.8 168 43.5
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 1.3e-20 104.4 190 44.7
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-20 104.4 176 45.5
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.7e-20 104.0 189 43.4
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-20 104.0 169 47.3
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.7e-20 104.0 169 47.3
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.3e-20 103.6 175 48.0
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 3.0e-20 103.2 106 54.7
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.9e-20 102.8 174 44.8
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 6.6e-20 102.1 168 44.6
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 8.6e-20 101.7 172 45.9
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.1e-19 101.3 111 56.8
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 3.3e-19 99.8 178 42.7
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.6e-19 99.0 179 48.6
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 7.3e-19 98.6 109 54.1
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 9.5e-19 98.2 182 47.3
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 9.5e-19 98.2 186 42.5
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.2e-18 97.8 179 48.0
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 2.1e-18 97.1 174 44.3
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 3.6e-18 96.3 177 44.1
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 8.1e-18 95.1 177 41.2
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 1.4e-17 94.4 168 43.5
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 1.8e-17 94.0 183 41.0
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 3.1e-17 93.2 83 60.2
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 4.0e-17 92.8 115 49.6
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.2e-17 92.4 169 42.6
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 5.8e-16 89.0 91 61.5
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.3e-15 87.8 112 53.6
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.7e-15 87.4 143 45.5
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 3.8e-15 86.3 119 52.1
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 4.9e-15 85.9 106 53.8
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 8.4e-15 85.1 153 52.9
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.9e-14 84.0 186 40.3
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 7.1e-14 82.0 88 56.8
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 9.2e-14 81.6 174 38.5
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.6e-13 80.9 162 38.3
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 2.1e-13 80.5 124 51.6
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 2.1e-13 80.5 151 43.0
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.7e-13 80.1 182 40.1
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 2.7e-13 80.1 151 42.4
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.5e-13 79.7 103 51.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 3.5e-13 79.7 118 42.4
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 3.5e-13 79.7 105 47.6
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 4.6e-13 79.3 115 45.2
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.6e-13 79.3 91 57.1
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.8e-13 78.6 93 55.9
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 1.0e-12 78.2 115 45.2
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.0e-12 78.2 121 47.9
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.3e-12 77.8 116 45.7
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.3e-12 77.8 106 49.1
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 2.3e-12 77.0 115 44.3
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 5.1e-12 75.9 115 43.5
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 6.6e-12 75.5 109 41.3
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 6.6e-12 75.5 111 42.3
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 1.1e-11 74.7 118 49.2
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 2.5e-11 73.6 120 41.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 3.3e-11 73.2 65 66.2
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 3.3e-11 73.2 111 41.4
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 5.6e-11 72.4 105 41.0
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 7.3e-11 72.0 112 43.8
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 7.3e-11 72.0 105 42.9
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 9.6e-11 71.6 150 39.3
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 9.6e-11 71.6 115 43.5
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.2e-10 71.2 93 46.2
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.2e-10 71.2 105 41.9
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 1.6e-10 70.9 94 47.9
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 1.6e-10 70.9 108 43.5
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 8.1e-10 68.6 109 40.4
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 8.1e-10 68.6 122 41.0
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 8.1e-10 68.6 75 50.7
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 1.1e-09 68.2 100 43.0
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 1.1e-09 68.2 100 43.0
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.4e-09 67.8 159 40.3
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.4e-09 67.0 93 47.3
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 2.4e-09 67.0 121 44.6
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 2.4e-09 67.0 149 36.2
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 4.0e-09 66.2 109 46.8
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 4.0e-09 66.2 83 48.2
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 6.9e-09 65.5 109 43.1
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.9e-09 65.5 75 49.3
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 6.9e-09 65.5 79 48.1
Rhsim07G0000400 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.2e-08 64.7 120 41.7
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 1.2e-08 64.7 75 50.7
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.5e-08 64.3 75 49.3
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 1.5e-08 64.3 88 45.5
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 1.5e-08 64.3 73 56.2
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 1.5e-08 64.3 75 49.3
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 1.5e-08 64.3 85 42.4
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 2.6e-08 63.5 72 51.4
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 3.4e-08 63.2 72 50.0
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 3.4e-08 63.2 72 51.4
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 3.4e-08 63.2 73 45.2
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 3.4e-08 63.2 75 49.3
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 4.4e-08 62.8 73 47.9
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.4e-08 62.8 75 48.0
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.4e-08 62.8 75 48.0
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 4.4e-08 62.8 114 41.2
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 5.8e-08 62.4 83 47.0
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 5.8e-08 62.4 119 37.8
Prupe.6G139500 Prunus persica HOM05D021165 ORTHO05D006261 5.8e-08 62.4 112 40.2
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 9.9e-08 61.6 73 52.1
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 1.7e-07 60.8 75 48.0
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 2.2e-07 60.5 99 37.4
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.2e-07 60.5 57 57.9
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 2.2e-07 60.5 76 46.1
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 2.2e-07 60.5 71 53.5
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 2.9e-07 60.1 67 50.7
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 2.9e-07 60.1 117 41.0
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 2.9e-07 60.1 109 43.1
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.9e-07 60.1 69 50.7
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 6.4e-07 58.9 111 40.5
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 6.4e-07 58.9 111 40.5
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 6.4e-07 58.9 75 46.7
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 6.4e-07 58.9 73 43.8
Gohir.D01G161700 Gossypium hirsutum HOM05D007970 ORTHO05D009943 8.4e-07 58.5 73 50.7
Gorai.002G200600 Gossypium raimondii HOM05D007970 ORTHO05D009943 8.4e-07 58.5 73 50.7
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 8.4e-07 58.5 101 45.5
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.1e-06 58.2 63 52.4
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 1.1e-06 58.2 63 52.4
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 1.4e-06 57.8 105 41.9
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 2.4e-06 57.0 111 40.5
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 2.4e-06 57.0 111 40.5
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 2.4e-06 57.0 111 40.5
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 2.4e-06 57.0 112 41.1
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 2.4e-06 57.0 81 46.9
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 2.4e-06 57.0 106 39.6
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 2.4e-06 57.0 104 37.5
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 4.2e-06 56.2 95 44.2
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.4e-06 55.8 63 52.4
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 5.4e-06 55.8 69 55.1
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 7.1e-06 55.5 83 41.0
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 9.3e-06 55.1 63 47.6
Gohir.D02G227400 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.3e-06 55.1 95 41.1
Gorai.005G255300 Gossypium raimondii HOM05D007970 ORTHO05D009943 9.3e-06 55.1 95 41.1
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 9.3e-06 55.1 66 45.5


User provided reference genes

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