Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.0e-82 310.1 164 100.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 3.4e-41 172.2 155 67.1
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 1.9e-23 113.2 122 59.8
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 9.2e-23 110.9 116 57.8
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 4.4e-17 92.0 99 54.5
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 1.1e-15 87.4 127 48.8
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 1.4e-15 87.0 98 53.1
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 7.1e-15 84.7 88 55.7
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 2.1e-14 83.2 92 52.2
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.5e-14 82.4 108 50.0
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.5e-14 82.4 88 53.4
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 3.5e-14 82.4 94 52.1
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 4.6e-14 82.0 88 53.4
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 7.8e-14 81.3 88 51.1
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-13 80.5 115 46.1
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-13 80.5 115 45.2
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.3e-13 80.5 115 45.2
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.3e-13 80.5 88 52.3
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.0e-13 79.3 106 49.1
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.9e-13 79.0 94 50.0
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 5.1e-13 78.6 115 44.3
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 6.6e-13 78.2 86 52.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 6.6e-13 78.2 96 51.0
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 8.7e-13 77.8 96 49.0
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 8.7e-13 77.8 96 49.0
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 8.7e-13 77.8 93 49.5
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 8.7e-13 77.8 88 48.9
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 1.5e-12 77.0 112 46.4
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.5e-12 77.0 88 50.0
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.5e-12 77.0 88 50.0
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.9e-12 76.6 93 48.4
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 2.5e-12 76.3 108 46.3
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 2.5e-12 76.3 100 46.0
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 3.3e-12 75.9 109 45.9
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 3.3e-12 75.9 110 43.6
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.3e-12 75.5 115 43.5
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 4.3e-12 75.5 86 52.3
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 5.6e-12 75.1 96 41.7
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 5.6e-12 75.1 86 50.0
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 5.6e-12 75.1 124 42.7
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 5.6e-12 75.1 88 48.9
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 5.6e-12 75.1 97 44.3
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.3e-12 74.7 86 52.3
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.3e-12 74.7 86 52.3
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 7.3e-12 74.7 86 52.3
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 7.3e-12 74.7 107 43.9
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 7.3e-12 74.7 100 44.0
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 9.6e-12 74.3 94 45.7
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 9.6e-12 74.3 87 49.4
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.2e-11 73.9 96 43.8
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 1.2e-11 73.9 103 41.7
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 1.6e-11 73.6 92 44.6
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 1.6e-11 73.6 93 49.5
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 1.6e-11 73.6 89 47.2
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.6e-11 73.6 86 54.7
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 2.1e-11 73.2 86 51.2
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.1e-11 73.2 86 52.3
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 2.1e-11 73.2 86 50.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.8e-11 72.8 96 41.7
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 2.8e-11 72.8 96 42.7
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 3.6e-11 72.4 107 40.2
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 3.6e-11 72.4 96 41.7
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 3.6e-11 72.4 93 49.5
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 4.7e-11 72.0 96 41.7
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 4.7e-11 72.0 86 48.8
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 4.7e-11 72.0 93 45.2
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 4.7e-11 72.0 104 44.2
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 6.2e-11 71.6 96 42.7
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 6.2e-11 71.6 86 51.2
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 6.2e-11 71.6 88 46.6
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 6.2e-11 71.6 93 49.5
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 6.2e-11 71.6 104 44.2
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 8.1e-11 71.2 104 45.2
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 8.1e-11 71.2 126 38.9
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 8.1e-11 71.2 96 40.6
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 8.1e-11 71.2 93 43.0
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 8.1e-11 71.2 86 52.3
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 1.1e-10 70.9 104 43.3
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.1e-10 70.9 85 49.4
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 1.4e-10 70.5 89 44.9
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 1.4e-10 70.5 98 38.8
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.4e-10 70.5 104 43.3
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.4e-10 70.5 54 68.5
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 1.8e-10 70.1 105 43.8
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 2.4e-10 69.7 115 40.0
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 2.4e-10 69.7 99 47.5
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.4e-10 69.7 95 42.1
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.4e-10 69.7 93 44.1
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.1e-10 69.3 93 40.9
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 3.1e-10 69.3 96 40.6
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 3.1e-10 69.3 97 39.2
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 4.0e-10 68.9 86 45.3
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 5.2e-10 68.6 96 41.7
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.2e-09 67.4 96 41.7
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 1.2e-09 67.4 96 40.6
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.5e-09 67.0 96 37.5
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.5e-09 67.0 86 45.3
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-09 66.6 96 40.6
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.0e-09 66.6 104 43.3
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 5.8e-09 65.1 96 37.5
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 7.6e-09 64.7 125 37.6
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 9.9e-09 64.3 94 42.6
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.3e-08 63.9 84 44.0
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.3e-08 63.9 84 41.7
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.2e-08 63.2 92 44.6
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.2e-08 63.2 93 45.2
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.8e-08 62.4 86 46.5
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 3.8e-08 62.4 86 46.5
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 4.9e-08 62.0 92 46.7
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 4.9e-08 62.0 90 42.2
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 4.9e-08 62.0 95 40.0
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 1.1e-07 60.8 86 41.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.9e-07 60.1 86 45.3
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.4e-07 59.7 86 43.0
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 9.3e-07 57.8 93 33.3
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.2e-06 57.4 104 32.7
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 2.7e-06 56.2 95 40.0
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 4.6e-06 55.5 85 41.2
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 7.8e-06 54.7 111 35.1


User provided reference genes

Program Settings