Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0126400 Rhododendron simsii HOM05D004241 ORTHO05D006031 1.4e-50 202.6 100 100.0
Rhsim04G0126500 Rhododendron simsii HOM05D004241 ORTHO05D006031 1.4e-29 132.9 71 88.7
Actinidia05359 Actinidia chinensis HOM05D004241 ORTHO05D006031 2.0e-28 129.0 71 87.3
Hma1.2p1_0362F.1_g136490 Hydrangea macrophylla HOM05D004241 ORTHO05D006031 5.8e-28 127.5 71 85.9
Dinv13159 Davidia involucrata HOM05D004241 ORTHO05D006031 7.6e-28 127.1 71 88.7
CSS0018345 Camellia sinensis var. sinensis HOM05D004241 ORTHO05D006031 2.2e-27 125.6 71 87.3
ECA236G0379 Erigeron canadensis HOM05D000031 ORTHO05D006031 3.8e-27 124.8 71 81.7
CiPaw.09G211300 Carya illinoinensis HOM05D004241 ORTHO05D006031 4.9e-27 124.4 71 80.3
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 8.4e-27 123.6 71 84.5
Lj3A950T42 Lonicera japonica HOM05D004241 ORTHO05D006031 8.4e-27 123.6 71 85.9
Haze_21025 Corylus avellana HOM05D004241 ORTHO05D006031 1.9e-26 122.5 71 78.9
Medtr7g069210 Medicago truncatula HOM05D004241 ORTHO05D006031 1.9e-26 122.5 71 80.3
Cfa017183 Carpinus fangiana HOM05D004241 ORTHO05D006031 3.2e-26 121.7 71 78.9
Lalb_Chr19g0124421 Lupinus albus HOM05D004241 ORTHO05D006031 4.2e-26 121.3 71 81.7
Nitab4.5_0000261g0130 Nicotiana tabacum HOM05D004241 ORTHO05D006031 4.2e-26 121.3 72 84.7
GSVIVG01011187001 Vitis vinifera HOM05D004241 ORTHO05D006031 4.2e-26 121.3 72 77.8
EL10Ac5g12540 Beta vulgaris HOM05D004241 ORTHO05D006031 5.4e-26 120.9 71 80.3
FAN02G4369 Fragaria x ananassa HOM05D004241 ORTHO05D006031 7.1e-26 120.6 71 78.9
Oeu017800.1 Olea europaea HOM05D004241 ORTHO05D006031 7.1e-26 120.6 72 81.9
Nitab4.5_0008676g0010 Nicotiana tabacum HOM05D004241 ORTHO05D006031 1.2e-25 119.8 75 82.7
unitig_578.g15901 Utricularia gibba HOM05D004241 ORTHO05D006031 1.2e-25 119.8 72 76.4
Manes.09G106900 Manihot esculenta HOM05D004241 ORTHO05D006031 1.6e-25 119.4 71 81.7
TAR633G2528 Trochodendron aralioides HOM05D004241 ORTHO05D006031 1.6e-25 119.4 71 83.1
Cc06_g01120 Coffea canephora HOM05D004241 ORTHO05D006031 2.1e-25 119.0 76 81.6
FvH4_6g11190 Fragaria vesca HOM05D004241 ORTHO05D006031 2.7e-25 118.6 71 77.5
FAN09G0084 Fragaria x ananassa HOM05D004241 ORTHO05D006031 2.7e-25 118.6 71 77.5
FAN09G0733 Fragaria x ananassa HOM05D004241 ORTHO05D006031 2.7e-25 118.6 71 77.5
Nn2g13169 Nelumbo nucifera HOM05D004241 ORTHO05D006031 2.7e-25 118.6 72 77.8
Sopen09g007610 Solanum pennellii HOM05D004241 ORTHO05D006031 2.7e-25 118.6 72 83.3
DCAR_015394 Daucus carota HOM05D004241 ORTHO05D006031 3.5e-25 118.2 71 81.7
TAR636G3470 Trochodendron aralioides HOM05D004241 ORTHO05D006031 3.5e-25 118.2 72 80.6
Duzib093G0784 Durio zibethinus HOM05D004241 ORTHO05D006031 4.6e-25 117.9 71 80.3
Oeu038754.1 Olea europaea HOM05D004241 ORTHO05D006031 4.6e-25 117.9 72 80.6
MSTRG.18996 Avicennia marina HOM05D004241 ORTHO05D006031 6.0e-25 117.5 72 80.6
MD12G1171900 Malus domestica HOM05D004241 ORTHO05D006031 6.0e-25 117.5 71 76.1
C01p28890 Brassica napus HOM05D003030 ORTHO05D006031 7.8e-25 117.1 72 79.2
BolC1t02821H Brassica oleracea HOM05D004241 ORTHO05D006031 7.8e-25 117.1 72 79.2
Dinv04461 Davidia involucrata HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 84.5
Dinv05780 Davidia involucrata HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 84.5
Migut.J00141 Erythranthe guttata HOM05D004241 ORTHO05D006031 7.8e-25 117.1 72 81.9
Gohir.A04G092900 Gossypium hirsutum HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 78.9
Gohir.D04G132200 Gossypium hirsutum HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 78.9
Gorai.012G116000 Gossypium raimondii HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 78.9
PGR031G0770 Punica granatum HOM05D004241 ORTHO05D006031 7.8e-25 117.1 72 76.4
QL07p035079 Quercus lobata HOM05D004241 ORTHO05D006031 7.8e-25 117.1 71 78.9
PGSC0003DMG400008481 Solanum tuberosum HOM05D004241 ORTHO05D006031 7.8e-25 117.1 72 81.9
Prupe.6G280100 Prunus persica HOM05D004241 ORTHO05D006031 1.0e-24 116.7 71 77.5
TPR.G35446 Trifolium pratense HOM05D004241 ORTHO05D006031 1.0e-24 116.7 71 78.9
Zm00001eb286140 Zea mays HOM05D004241 ORTHO05D006031 1.0e-24 116.7 73 78.1
Atru.chr8.2269 Acer truncatum HOM05D004241 ORTHO05D006031 1.3e-24 116.3 71 80.3
Lj1g0026131 Lotus japonicus HOM05D004241 ORTHO05D006031 1.3e-24 116.3 71 80.3
MD00G1061800 Malus domestica HOM05D004241 ORTHO05D006031 1.3e-24 116.3 71 78.9
RcHm_v2.0_Chr3g0462631 Rosa chinensis HOM05D004241 ORTHO05D006031 1.3e-24 116.3 72 77.8
MELO3C026000.2 Cucumis melo HOM05D004241 ORTHO05D006031 2.3e-24 115.5 71 80.3
Psat3g126440 Pisum sativum HOM05D004241 ORTHO05D006031 2.3e-24 115.5 71 80.3
Thecc.05G012600 Theobroma cacao HOM05D004241 ORTHO05D006031 2.3e-24 115.5 71 78.9
Sabra06G0078400 Salix brachista HOM05D004241 ORTHO05D006031 3.0e-24 115.2 75 78.7
Carub.0005s1817 Capsella rubella HOM05D004241 ORTHO05D006031 3.9e-24 114.8 72 79.2
A01p23250 Brassica napus HOM05D003030 ORTHO05D006031 5.1e-24 114.4 72 77.8
BraA01t02235Z Brassica rapa HOM05D004241 ORTHO05D006031 5.1e-24 114.4 72 77.8
Ca_07660_v3 Cicer arietinum L. HOM05D004241 ORTHO05D006031 5.1e-24 114.4 71 78.9
Aa31LG10G9090 Aethionema arabicum HOM05D004241 ORTHO05D006031 6.6e-24 114.0 73 79.5
BcaC09g50106 Brassica carinata HOM05D004241 ORTHO05D006031 6.6e-24 114.0 72 77.8
ClCG04G006920 Citrullus lanatus HOM05D004241 ORTHO05D006031 6.6e-24 114.0 71 78.9
COL.COLO4_03385 Corchorus olitorius HOM05D004241 ORTHO05D006031 6.6e-24 114.0 72 79.2
Cpa.g.sc11.77 Carica papaya HOM05D004241 ORTHO05D006031 8.7e-24 113.6 71 78.9
Sp5g10450 Schrenkiella parvula HOM05D004241 ORTHO05D006031 8.7e-24 113.6 72 79.2
TWI74G0606 Tripterygium wilfordii HOM05D004241 ORTHO05D006031 8.7e-24 113.6 73 79.5
vmacro08890 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 8.7e-24 113.6 130 51.5
Ciclev10011985m.g Citrus clementina HOM05D004241 ORTHO05D006031 1.1e-23 113.2 71 78.9
Duzib128G1618 Durio zibethinus HOM05D004241 ORTHO05D006031 1.1e-23 113.2 72 76.4
AL5G32280 Arabidopsis lyrata HOM05D004241 ORTHO05D006031 1.5e-23 112.8 72 79.2
Peaxi162Scf00890g00119 Petunia axillaris HOM05D004241 ORTHO05D006031 1.5e-23 112.8 60 86.7
CAN.G283.14 Capsicum annuum HOM05D004241 ORTHO05D006031 1.9e-23 112.5 72 79.2
CARHR161450 Cardamine hirsuta HOM05D004241 ORTHO05D006031 1.9e-23 112.5 72 79.2
CsaV3_4G026340 Cucumis sativus L. HOM05D004241 ORTHO05D006031 2.5e-23 112.1 71 78.9
Dinv01710 Davidia involucrata HOM05D004241 ORTHO05D006031 2.5e-23 112.1 71 81.7
PSO801G0614 Papaver somniferum HOM05D004241 ORTHO05D006031 2.5e-23 112.1 72 77.8
SalBow5G3053 Salvia bowleyana HOM05D004241 ORTHO05D006031 2.5e-23 112.1 72 77.8
CANSAT35G0589 Cannabis sativa HOM05D004241 ORTHO05D006031 3.3e-23 111.7 72 75.0
Eucgr.A00535 Eucalyptus grandis HOM05D004241 ORTHO05D006031 3.3e-23 111.7 71 77.5
AT3G51820 Arabidopsis thaliana HOM05D004241 ORTHO05D006031 4.3e-23 111.3 72 77.8
BcaB01g00414 Brassica carinata HOM05D004241 ORTHO05D006031 5.6e-23 110.9 72 77.8
Os05g0349700 Oryza sativa ssp. japonica HOM05D004241 ORTHO05D006031 5.6e-23 110.9 72 77.8
Hund14874 Selenicereus undatus HOM05D004241 ORTHO05D006031 5.6e-23 110.9 71 77.5
Sed0025380 Sechium edule HOM05D004241 ORTHO05D006031 1.3e-22 109.8 71 76.1
BcaB01g00474 Brassica carinata HOM05D004241 ORTHO05D006031 1.6e-22 109.4 73 75.3
BcaNung00368 Brassica carinata HOM05D004241 ORTHO05D006031 1.6e-22 109.4 73 75.3
A09p44970 Brassica napus HOM05D004241 ORTHO05D006031 1.6e-22 109.4 73 75.3
BolC8t50320H Brassica oleracea HOM05D004241 ORTHO05D006031 1.6e-22 109.4 73 75.3
BraA09t39957Z Brassica rapa HOM05D004241 ORTHO05D006031 1.6e-22 109.4 73 75.3
CiPaw.10G157700 Carya illinoinensis HOM05D004241 ORTHO05D006031 1.6e-22 109.4 71 73.2
CDE04G1685 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.6e-22 109.4 72 76.4
AUR62030817 Chenopodium quinoa HOM05D004241 ORTHO05D006031 1.6e-22 109.4 71 74.6
Sc07g0006700 Simmondsia chinensis HOM05D004241 ORTHO05D006031 1.6e-22 109.4 71 76.1
THA.LOC104805975 Tarenaya hassleriana HOM05D004241 ORTHO05D006031 1.6e-22 109.4 71 78.9
Aqoxy2G00847 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 2.8e-22 108.6 74 75.7
Nn2g10892 Nelumbo nucifera HOM05D004241 ORTHO05D006031 2.8e-22 108.6 71 77.5
Phvul.008G096500 Phaseolus vulgaris HOM05D004241 ORTHO05D006031 2.8e-22 108.6 71 74.6
Ah.12g058810 Amaranthus hybridus HOM05D004241 ORTHO05D006031 3.6e-22 108.2 72 73.6
Thhalv10010408m.g Eutrema salsugineum HOM05D004241 ORTHO05D006031 3.6e-22 108.2 72 75.0
ATR0681G392 Amborella trichopoda HOM05D004241 ORTHO05D006031 4.8e-22 107.8 73 75.3
Lj2C71T11 Lonicera japonica HOM05D004241 ORTHO05D006031 4.8e-22 107.8 72 75.0
PSO339G5814 Papaver somniferum HOM05D004241 ORTHO05D006031 4.8e-22 107.8 72 75.0
VMungo1383G0980 Vigna mungo HOM05D004241 ORTHO05D006031 4.8e-22 107.8 71 73.2
CDE08G0537 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 6.2e-22 107.5 72 75.0
AUR62030480 Chenopodium quinoa HOM05D004241 ORTHO05D006031 6.2e-22 107.5 71 73.2
C08p27050 Brassica napus HOM05D004241 ORTHO05D006031 1.1e-21 106.7 73 74.0
Glyma.18G203400 Glycine max HOM05D004241 ORTHO05D006031 1.1e-21 106.7 71 73.2
MBI15_g19417_MAGBIO Magnolia biondii HOM05D004241 ORTHO05D006031 1.1e-21 106.7 60 81.7
Glyma.07G152300 Glycine max HOM05D004241 ORTHO05D006031 1.4e-21 106.3 71 73.2
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 2.4e-21 105.5 54 88.9
SEGI_30165 Sequoiadendron giganteum HOM05D004241 ORTHO05D006031 6.9e-21 104.0 73 74.0
HPP92_013785 Vanilla planifolia HOM05D004241 ORTHO05D006031 6.9e-21 104.0 73 65.8
arahy.Tifrunner.gnm1.ann1.8A66NB Arachis hypogaea HOM05D004241 ORTHO05D006031 1.2e-20 103.2 60 78.3
Potri.006G102100 Populus trichocarpa HOM05D004241 ORTHO05D006031 5.8e-20 100.9 71 73.2
Potri.016G119400 Populus trichocarpa HOM05D004241 ORTHO05D006031 7.6e-20 100.5 73 72.6
Mapoly0045s0080 Marchantia polymorpha HOM05D004241 ORTHO05D006031 2.2e-19 99.0 72 66.7
Pp3c13_13830 Physcomitrium patens HOM05D004241 ORTHO05D006031 1.1e-18 96.7 71 66.2
arahy.Tifrunner.gnm1.ann1.DE57MX Arachis hypogaea HOM05D004241 ORTHO05D001299 2.4e-18 95.5 56 76.8
arahy.Tifrunner.gnm1.ann1.12W07B Arachis hypogaea HOM05D004241 ORTHO05D001299 5.4e-18 94.4 56 76.8
Aqoxy4G02498 Aquilegia oxysepala HOM05D004241 ORTHO05D006031 7.1e-18 94.0 76 61.8
HPP92_013874 Vanilla planifolia HOM05D004241 ORTHO05D006031 1.2e-17 93.2 74 63.5
AagrBONN_evm.TU.Sc2ySwM_228.1146 Anthoceros agrestis HOM05D004241 ORTHO05D006031 1.8e-16 89.4 66 66.7
arahy.Tifrunner.gnm1.ann1.I63G1M Arachis hypogaea HOM05D004241 ORTHO05D006031 1.8e-16 89.4 55 74.5
SMO271G0089 Selaginella moellendorffii HOM05D004241 ORTHO05D006031 6.7e-16 87.4 72 62.5
CDE04G2983 Ceratophyllum demersum HOM05D004241 ORTHO05D006031 1.5e-15 86.3 71 59.2
Sabra16G0115300 Salix brachista HOM05D004241 ORTHO05D006031 3.3e-15 85.1 52 75.0
arahy.Tifrunner.gnm1.ann1.YJ5G8U Arachis hypogaea HOM05D004241 ORTHO05D006031 5.6e-15 84.3 47 80.9
arahy.Tifrunner.gnm1.ann1.F5Z0S5 Arachis hypogaea HOM05D004241 ORTHO05D006031 7.4e-15 84.0 47 80.9
arahy.Tifrunner.gnm1.ann1.ZW8CA6 Arachis hypogaea HOM05D004241 ORTHO05D006031 3.7e-14 81.6 56 67.9
Cre06.g294750 Chlamydomonas reinhardtii HOM05D004241 ORTHO05D006031 4.8e-14 81.3 46 80.4
PSO339G4053 Papaver somniferum HOM05D004241 ORTHO05D006031 6.2e-14 80.9 69 58.0
PSO384G4055 Papaver somniferum HOM05D004241 ORTHO05D006031 1.1e-13 80.1 69 60.9
MCO16G058 Micromonas commoda HOM05D004241 ORTHO05D006031 5.3e-13 77.8 70 55.7
arahy.Tifrunner.gnm1.ann1.IR2XKV Arachis hypogaea HOM05D004241 ORTHO05D006031 3.4e-12 75.1 55 70.9
arahy.Tifrunner.gnm1.ann1.Z8S8NK Arachis hypogaea HOM05D004241 ORTHO05D006031 3.8e-11 71.6 53 69.8
arahy.Tifrunner.gnm1.ann1.44A4XL Arachis hypogaea HOM05D004241 ORTHO05D026924 5.5e-10 67.8 53 66.0
vmacro08889 Vaccinium macrocarpon HOM05D004241 ORTHO05D006031 9.3e-10 67.0 29 96.6
COL.COLO4_19973 Corchorus olitorius HOM05D004241 ORTHO05D006031 3.5e-09 65.1 30 86.7
FAN14G4537 Fragaria x ananassa HOM05D004241 ORTHO05D006031 6.0e-09 64.3 32 78.1
FAN05G0935 Fragaria x ananassa HOM05D004241 ORTHO05D026924 3.0e-08 62.0 41 75.6
FAN14G2483 Fragaria x ananassa HOM05D004241 ORTHO05D026924 1.1e-07 60.1 41 73.2
Prupe.4G268700 Prunus persica HOM05D004241 ORTHO05D006031 2.5e-07 58.9 27 88.9
PRCOL_00003234 Prasinoderma coloniale HOM05D004241 ORTHO05D006031 5.7e-07 57.8 44 59.1


User provided reference genes

Program Settings