Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0121800 Rhododendron simsii HOM05D007752 ORTHO05D009994 6.8e-200 701.0 534 100.0
CSS0006720 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 3.4e-66 256.9 526 59.7
CSS0000350 Camellia sinensis var. sinensis HOM05D007752 ORTHO05D009994 1.4e-56 224.9 526 57.4
CiPaw.10G164800 Carya illinoinensis HOM05D007752 ORTHO05D009994 6.5e-33 146.4 443 50.6
Oeu057981.1 Olea europaea HOM05D007752 ORTHO05D009994 8.4e-33 146.0 488 56.8
Haze_21175 Corylus avellana HOM05D007752 ORTHO05D009994 4.2e-32 143.7 513 51.9
Lj3P941T40 Lonicera japonica HOM05D007752 ORTHO05D009994 5.5e-32 143.3 156 47.4
PGR031G1793 Punica granatum HOM05D007752 ORTHO05D009994 3.0e-30 137.5 537 51.8
QL07p032115 Quercus lobata HOM05D007752 ORTHO05D009994 6.7e-30 136.3 486 56.4
Actinidia29032 Actinidia chinensis HOM05D007752 ORTHO05D009994 1.9e-29 134.8 141 48.9
TWI77G0759 Tripterygium wilfordii HOM05D007752 ORTHO05D009994 1.9e-29 134.8 167 43.7
Sabra04G0153400 Salix brachista HOM05D007752 ORTHO05D009994 1.4e-27 128.6 529 52.0
PSO170G5102 Papaver somniferum HOM05D007752 ORTHO05D009994 9.0e-27 125.9 155 41.9
Cfa017034 Carpinus fangiana HOM05D007752 ORTHO05D009994 1.5e-26 125.2 453 53.9
Ciclev10013314m.g Citrus clementina HOM05D007752 ORTHO05D009994 2.0e-26 124.8 428 58.9
PSO017G1004 Papaver somniferum HOM05D007752 ORTHO05D009994 1.7e-25 121.7 153 41.8
Lj1g0026088 Lotus japonicus HOM05D007752 ORTHO05D009994 6.5e-25 119.8 451 53.7
AUR62029765 Chenopodium quinoa HOM05D007752 ORTHO05D009994 8.4e-25 119.4 387 63.0
Medtr7g073260 Medicago truncatula HOM05D007752 ORTHO05D009994 8.4e-25 119.4 437 59.7
TAR633G0335 Trochodendron aralioides HOM05D007752 ORTHO05D009994 8.4e-25 119.4 141 46.1
Dinv16979 Davidia involucrata HOM05D007752 ORTHO05D009994 4.2e-24 117.1 188 45.2
CANSAT35G0798 Cannabis sativa HOM05D007752 ORTHO05D009994 9.3e-24 115.9 434 53.0
Sc20g0006950 Simmondsia chinensis HOM05D007752 ORTHO05D009994 9.3e-24 115.9 155 38.1
Eucgr.A00738 Eucalyptus grandis HOM05D007752 ORTHO05D009994 2.7e-23 114.4 166 34.9
RcHm_v2.0_Chr3g0460471 Rosa chinensis HOM05D007752 ORTHO05D009994 6.1e-23 113.2 447 57.9
HanXRQChr01g0000111 Helianthus annuus HOM05D007752 ORTHO05D009994 1.0e-22 112.5 140 47.1
Hma1.2p1_0174F.1_g076820 Hydrangea macrophylla HOM05D007752 ORTHO05D009994 2.3e-22 111.3 436 58.5
SGA_v2.0_scaffold85G26614 Striga asiatica HOM05D007752 ORTHO05D009994 3.0e-22 110.9 132 41.7
SalBow8G2716 Salvia bowleyana HOM05D007752 ORTHO05D009994 8.7e-22 109.4 157 39.5
FAN14G1029 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.5e-21 108.6 382 62.0
Migut.J00038 Erythranthe guttata HOM05D007752 ORTHO05D009994 1.9e-21 108.2 431 57.5
FvH4_6g09870 Fragaria vesca HOM05D007752 ORTHO05D009994 4.3e-21 107.1 440 55.7
Potri.016G136700 Populus trichocarpa HOM05D007752 ORTHO05D009994 5.7e-21 106.7 529 50.7
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 6.3e-20 103.2 411 44.5
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 8.2e-20 102.8 122 48.4
Ah.08g209310 Amaranthus hybridus HOM05D007752 ORTHO05D009994 9.0e-19 99.4 391 58.1
Prupe.6G293600 Prunus persica HOM05D007752 ORTHO05D009994 9.0e-19 99.4 506 52.4
MD04G1174700 Malus domestica HOM05D007752 ORTHO05D009994 2.6e-18 97.8 439 57.9
Duzib151G0981 Durio zibethinus HOM05D007752 ORTHO05D009994 3.4e-18 97.4 187 36.9
FAN02G1651 Fragaria x ananassa HOM05D007752 ORTHO05D009994 5.9e-18 96.7 180 37.2
Sed0005875 Sechium edule HOM05D007752 ORTHO05D009994 2.2e-17 94.7 151 37.7
ClCG10G022730 Citrullus lanatus HOM05D007752 ORTHO05D009994 3.8e-17 94.0 157 36.9
COL.COLO4_06481 Corchorus olitorius HOM05D007752 ORTHO05D000248 8.5e-17 92.8 147 40.1
ECA248G3142 Erigeron canadensis HOM05D007752 ORTHO05D009994 8.5e-17 92.8 138 38.4
SalBow1G2062 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.1e-16 92.4 138 36.2
Thecc.04G151600 Theobroma cacao HOM05D007752 ORTHO05D009994 1.9e-16 91.7 113 44.2
Ca_07763_v3 Cicer arietinum L. HOM05D007752 ORTHO05D009994 4.2e-16 90.5 391 57.0
MELO3C009103.2 Cucumis melo HOM05D007752 ORTHO05D009994 4.2e-16 90.5 130 36.2
SalBow1G4712 Salvia bowleyana HOM05D007752 ORTHO05D009994 7.2e-16 89.7 464 53.4
THA.LOC104807022 Tarenaya hassleriana HOM05D007752 ORTHO05D009994 2.1e-15 88.2 161 32.9
MBI03_g22789_MAGBIO Magnolia biondii HOM05D007752 ORTHO05D009994 4.6e-15 87.0 142 35.9
Peaxi162Scf00732g00031 Petunia axillaris HOM05D007752 ORTHO05D000248 4.6e-15 87.0 137 41.6
Gohir.A02G003300 Gossypium hirsutum HOM05D007752 ORTHO05D009994 6.1e-15 86.7 106 44.3
AUR62006417 Chenopodium quinoa HOM05D007752 ORTHO05D000248 7.9e-15 86.3 98 49.0
VMungo1383G3403 Vigna mungo HOM05D007752 ORTHO05D009994 1.4e-14 85.5 124 40.3
SalBow5G4979 Salvia bowleyana HOM05D007752 ORTHO05D009994 1.8e-14 85.1 156 34.0
EL10Ac7g17101 Beta vulgaris HOM05D007752 ORTHO05D000248 2.3e-14 84.7 383 58.5
Zm00001eb016080 Zea mays HOM05D007752 ORTHO05D009994 3.0e-14 84.3 157 34.4
Solyc09g042250.2 Solanum lycopersicum HOM05D007752 ORTHO05D009994 5.1e-14 83.6 80 58.8
Sopen09g015390 Solanum pennellii HOM05D007752 ORTHO05D009994 5.1e-14 83.6 80 58.8
Nitab4.5_0004433g0030 Nicotiana tabacum HOM05D007752 ORTHO05D009994 8.8e-14 82.8 114 43.9
Gorai.005G004200 Gossypium raimondii HOM05D007752 ORTHO05D009994 2.0e-13 81.6 154 28.6
Psat3g118880 Pisum sativum HOM05D007752 ORTHO05D009994 3.7e-12 77.4 110 43.6
Cpa.g.sc86.57 Carica papaya HOM05D007752 ORTHO05D009994 1.1e-11 75.9 91 40.7
Peaxi162Scf00141g00093 Petunia axillaris HOM05D007752 ORTHO05D009994 1.1e-11 75.9 100 46.0
Phvul.008G082800 Phaseolus vulgaris HOM05D007752 ORTHO05D009994 1.4e-11 75.5 124 35.5
VMungo0251G1651 Vigna mungo HOM05D007752 ORTHO05D009994 1.8e-11 75.1 161 32.3
Glyma.09G274800 Glycine max HOM05D007752 ORTHO05D009994 4.1e-11 73.9 433 45.3
TPR.G14113 Trifolium pratense HOM05D007752 ORTHO05D009994 6.9e-11 73.2 175 35.4
PGSC0003DMG400038126 Solanum tuberosum HOM05D007752 ORTHO05D009994 1.5e-10 72.0 75 46.7
Nn2g10299 Nelumbo nucifera HOM05D007752 ORTHO05D009994 2.0e-10 71.6 90 45.6
Aqoxy4G02425 Aquilegia oxysepala HOM05D007752 ORTHO05D009994 5.9e-10 70.1 174 32.8
HPP92_024978 Vanilla planifolia HOM05D007752 ORTHO05D009994 1.7e-09 68.6 91 39.6
Gohir.D02G003700 Gossypium hirsutum HOM05D007752 ORTHO05D009994 1.1e-08 65.9 92 40.2
RcHm_v2.0_Chr1g0326571 Rosa chinensis HOM05D006556 ORTHO05D008146 1.6e-07 62.0 104 35.6
VMungo0720G0765 Vigna mungo HOM05D007752 ORTHO05D009994 7.9e-07 59.7 73 46.6
Manes.08G171200 Manihot esculenta HOM05D007752 ORTHO05D009994 1.0e-06 59.3 56 60.7
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 1.0e-06 59.3 127 32.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 1.8e-06 58.5 128 34.4
BcaC06g36288 Brassica carinata HOM05D006556 ORTHO05D008146 2.3e-06 58.2 97 33.0
Sc20g0006960 Simmondsia chinensis HOM05D007752 ORTHO05D009994 2.3e-06 58.2 96 36.5
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 6.7e-06 56.6 152 23.7
Atru.chr3.1578 Acer truncatum HOM05D008684 ORTHO05D010796 6.7e-06 56.6 152 23.7
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 6.7e-06 56.6 94 30.9
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 6.7e-06 56.6 94 30.9
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 8.8e-06 56.2 127 29.9


User provided reference genes

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