Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 0.0e+00 1128.2 597 100.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 5.7e-288 993.8 597 87.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.5e-280 969.1 598 85.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 4.1e-278 961.1 597 84.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.9e-278 960.3 596 83.9
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.5e-277 957.6 597 86.3
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 2.4e-262 908.7 599 80.5
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.3e-260 902.9 598 79.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 5.0e-260 901.0 597 78.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.8e-257 892.5 591 80.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 4.0e-257 891.3 592 79.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.2e-257 891.0 597 78.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.0e-256 889.0 597 78.7
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.6e-256 888.6 597 77.7
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 9.8e-256 886.7 618 76.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.7e-255 885.9 597 78.6
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-255 885.2 593 78.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.4e-254 882.1 597 76.9
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.4e-254 882.1 592 77.5
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 9.1e-254 880.2 592 76.9
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.0e-253 879.0 603 76.8
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.2e-252 875.5 592 77.9
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.2e-252 875.5 597 78.1
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 3.8e-252 874.8 602 76.2
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.8e-252 874.8 597 77.9
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 8.5e-252 873.6 592 77.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.1e-251 873.2 597 77.6
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.5e-251 872.8 600 77.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.5e-251 872.1 589 77.8
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.5e-251 870.9 597 77.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 5.5e-251 870.9 599 78.3
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.2e-251 870.5 593 78.9
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.2e-250 869.8 593 78.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.6e-250 868.2 589 77.6
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 3.0e-249 865.1 597 77.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.0e-249 865.1 595 76.3
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.0e-249 865.1 597 77.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 4.0e-249 864.8 597 77.1
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 6.8e-249 864.0 592 77.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 8.8e-249 863.6 597 77.2
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.6e-248 862.1 597 76.7
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.4e-248 861.7 594 78.1
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.4e-248 861.7 592 77.7
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 4.4e-248 861.3 595 77.1
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 5.7e-248 860.9 598 77.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 9.8e-248 860.1 577 78.7
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 9.8e-248 860.1 597 76.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.3e-247 859.8 598 77.4
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.7e-247 859.4 595 75.8
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.8e-247 858.6 590 77.3
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.8e-247 858.6 598 77.4
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 6.3e-247 857.4 597 76.4
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 8.3e-247 857.1 590 76.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.1e-246 856.7 591 76.3
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.4e-246 856.3 592 77.4
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.4e-246 855.5 633 72.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 7.0e-246 854.0 572 79.7
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.2e-245 853.2 597 76.0
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.2e-245 853.2 597 75.7
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-245 852.8 589 76.2
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.6e-245 852.8 565 79.6
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.7e-245 852.0 597 76.2
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 3.5e-245 851.7 597 76.0
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.0e-244 850.1 592 76.7
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.3e-244 849.7 597 75.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.3e-244 849.7 597 75.0
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.7e-244 849.4 592 76.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.3e-244 849.0 590 76.4
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.9e-244 848.6 589 76.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 5.0e-244 847.8 590 76.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-243 846.3 590 75.9
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 3.3e-243 845.1 590 75.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.2e-242 843.2 598 75.8
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 3.6e-242 841.6 594 75.1
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 8.0e-242 840.5 591 74.3
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 8.0e-242 840.5 566 78.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.8e-241 839.3 590 75.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 6.8e-241 837.4 511 84.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.0e-240 835.9 699 66.5
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 2.0e-240 835.9 599 73.8
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 9.8e-240 833.6 508 84.3
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-239 833.2 593 74.4
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 1.3e-239 833.2 599 75.3
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.7e-239 832.8 593 74.4
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.7e-239 832.8 702 65.2
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.7e-239 832.8 597 73.5
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.2e-239 832.4 589 75.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 2.2e-239 832.4 593 73.7
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.7e-239 831.6 592 74.0
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 6.4e-239 830.9 594 74.7
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.1e-238 830.1 591 73.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.8e-238 829.3 599 74.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.4e-238 827.8 598 73.7
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 7.0e-238 827.4 594 73.2
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 9.2e-238 827.0 595 73.1
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.6e-237 826.2 591 73.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.0e-237 825.9 597 72.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.0e-236 822.0 592 74.0
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.9e-236 821.6 590 72.9
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 5.0e-236 821.2 599 74.3
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-235 820.1 594 73.1
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.1e-235 820.1 597 72.7
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.5e-235 819.7 594 73.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.3e-235 818.5 594 72.7
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.3e-235 818.1 591 72.9
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 5.6e-235 817.8 595 73.1
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 7.3e-235 817.4 594 73.4
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.2e-234 816.6 597 71.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.8e-234 815.5 597 71.7
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.3e-233 812.4 596 73.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 4.4e-232 808.1 593 73.0
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 7.5e-232 807.4 580 74.1
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.6e-218 763.1 595 68.1
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 5.2e-217 758.1 603 69.3
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.5e-216 756.5 579 69.8
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 4.4e-216 755.0 571 71.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.2e-207 726.1 589 65.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 3.8e-207 725.3 590 66.9
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 3.0e-204 715.7 595 65.7
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 8.7e-204 714.1 597 65.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 7.3e-203 711.1 507 78.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.1e-198 697.2 501 74.3
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.0e-193 677.6 433 83.1
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.5e-182 641.7 450 74.9
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.1e-180 635.2 478 69.0
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 3.4e-168 595.9 535 62.2
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 7.4e-155 551.6 380 77.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-148 531.2 400 74.8
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 4.0e-148 529.3 372 74.2
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.8e-143 512.7 578 56.7
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.5e-142 510.0 520 53.5
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 8.3e-138 495.0 321 81.6
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.5e-128 462.6 314 80.3
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 5.4e-113 412.5 250 85.2
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 7.8e-112 408.7 535 46.4
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.8e-100 370.9 228 88.2
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.0e-100 369.8 554 43.7
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-94 351.7 230 77.8
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.7e-80 303.9 245 66.9
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 4.2e-73 280.0 210 70.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 4.6e-64 250.0 256 52.0
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.3e-63 248.4 320 43.1
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.3e-54 216.9 130 82.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.5e-49 201.1 114 86.0
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.3e-47 194.5 246 45.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.2e-32 145.6 133 61.7
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.9e-26 124.4 216 40.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 2.3e-23 114.8 106 56.6
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 1.5e-22 112.1 104 58.7
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.0e-22 111.7 186 40.9
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-19 102.4 50 92.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.1e-17 95.9 85 62.4
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-16 92.4 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-16 92.4 52 88.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.8e-14 82.8 61 72.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.0e-10 72.8 65 64.6
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 1.3e-10 72.4 85 52.9
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 3.9e-10 70.9 71 57.7
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 5.0e-10 70.5 70 58.6
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.5e-09 68.2 71 56.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 4.3e-09 67.4 57 56.1
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 96.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.5e-09 66.2 30 96.7
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.0e-07 62.8 117 36.8
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 2.6e-06 58.2 57 43.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 4.4e-06 57.4 51 68.6


User provided reference genes

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