Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 0.0e+00 2840.1 1484 100.0
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 0.0e+00 2166.3 1494 79.9
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1994.9 1492 73.5
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1985.3 1476 74.1
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 0.0e+00 1923.3 1458 72.9
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 0.0e+00 1812.7 1503 66.9
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 0.0e+00 1793.1 1490 66.3
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 0.0e+00 1775.8 1494 66.1
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 0.0e+00 1772.7 1492 66.0
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 0.0e+00 1771.5 1378 69.1
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 0.0e+00 1767.7 1446 66.9
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 0.0e+00 1759.6 1488 66.4
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1745.3 1487 65.1
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 0.0e+00 1743.8 1489 65.3
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 0.0e+00 1741.9 1494 65.2
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 0.0e+00 1739.5 1489 65.6
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 0.0e+00 1738.0 1494 64.0
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1737.2 1477 64.7
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 0.0e+00 1733.0 1489 65.2
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 0.0e+00 1729.1 1500 65.4
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 0.0e+00 1723.4 1489 64.2
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1722.2 1490 64.3
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 0.0e+00 1721.8 1489 64.1
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1716.8 1486 64.1
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1716.8 1506 64.3
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 0.0e+00 1711.0 1460 64.9
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 0.0e+00 1709.5 1518 62.9
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 0.0e+00 1709.5 1490 63.8
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 0.0e+00 1706.4 1501 64.5
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 0.0e+00 1704.9 1488 62.4
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 0.0e+00 1703.0 1386 68.0
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1692.9 1460 64.4
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 0.0e+00 1692.9 1444 65.7
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 0.0e+00 1687.9 1456 64.7
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 0.0e+00 1680.6 1504 63.0
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 0.0e+00 1673.7 1486 63.3
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 0.0e+00 1667.9 1503 63.2
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 0.0e+00 1661.0 1489 62.7
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 0.0e+00 1661.0 1494 62.8
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 0.0e+00 1655.2 1492 61.9
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 0.0e+00 1653.6 1486 63.5
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 0.0e+00 1649.0 1468 62.5
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1648.6 1498 61.9
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 0.0e+00 1648.6 1424 62.7
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 0.0e+00 1644.4 1314 69.9
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1644.4 1501 62.7
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1644.4 1490 61.7
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 0.0e+00 1643.2 1500 61.9
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 0.0e+00 1639.4 1467 61.4
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 0.0e+00 1637.1 1468 61.9
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 0.0e+00 1636.3 1417 62.3
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1635.5 1467 62.1
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 0.0e+00 1634.8 1471 61.9
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 0.0e+00 1634.0 1489 61.5
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1630.9 1500 62.5
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 0.0e+00 1629.0 1504 61.3
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 0.0e+00 1627.1 1409 62.1
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 0.0e+00 1625.1 1492 62.1
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1624.4 1414 61.9
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1622.4 1498 59.7
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 0.0e+00 1621.7 1385 62.4
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 0.0e+00 1620.5 1431 61.6
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1617.4 1507 59.4
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 0.0e+00 1617.4 1495 59.3
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1615.9 1507 59.3
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1615.9 1507 59.3
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 0.0e+00 1613.2 1491 61.5
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1612.8 1463 60.6
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 0.0e+00 1612.4 1464 60.5
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 0.0e+00 1612.4 1464 60.5
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 0.0e+00 1612.0 1494 62.7
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 0.0e+00 1611.3 1500 59.7
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 0.0e+00 1610.9 1490 59.0
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 0.0e+00 1610.1 1428 63.8
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 0.0e+00 1606.3 1473 61.4
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 0.0e+00 1606.3 1490 61.0
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 0.0e+00 1603.6 1468 61.0
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 0.0e+00 1602.8 1479 61.4
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1592.0 1549 57.8
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 0.0e+00 1588.9 1402 61.0
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1585.9 1378 62.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 0.0e+00 1582.4 1482 62.8
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 0.0e+00 1579.7 1378 62.1
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 0.0e+00 1578.1 1490 59.7
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 0.0e+00 1576.6 1468 59.7
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 0.0e+00 1574.7 1506 60.2
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 0.0e+00 1506.1 1389 61.1
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1505.7 1483 57.5
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 0.0e+00 1484.5 1399 60.3
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1481.8 1503 57.1
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 0.0e+00 1444.9 1273 63.9
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 0.0e+00 1443.3 1500 55.1
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 0.0e+00 1414.1 1360 57.6
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 0.0e+00 1413.3 1496 53.7
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 0.0e+00 1392.9 1323 60.2
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 0.0e+00 1379.4 1275 61.3
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 0.0e+00 1362.8 1337 58.6
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 0.0e+00 1285.4 1418 52.5
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1268.1 1499 49.6
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 0.0e+00 1267.7 1248 57.9
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 0.0e+00 1203.0 1492 48.6
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 0.0e+00 1159.8 1131 58.4
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 0.0e+00 1094.3 903 66.7
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 4.5e-278 962.2 1511 39.9
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.9e-263 913.7 1375 41.0
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 3.5e-262 909.4 1386 39.5
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 3.3e-260 902.9 929 57.1
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.1e-255 887.9 1477 39.0
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 2.7e-254 883.2 1379 38.8
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 3.0e-245 853.2 861 58.7
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 6.5e-216 755.7 1406 36.7
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.6e-168 595.9 757 49.3
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.9e-144 517.3 594 54.0
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 1.6e-142 511.9 1426 29.7
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.1e-142 511.5 1272 28.9
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.6e-94 352.4 370 55.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 1.0e-88 333.2 347 57.1
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 1.6e-65 256.1 1152 24.2
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.0e-64 253.4 1181 23.3
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.1e-61 241.5 329 48.0
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.1e-61 241.5 329 48.0
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-56 226.5 208 59.6
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.3e-54 217.2 216 56.9
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-53 216.1 230 53.9
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.3e-50 205.3 328 43.6
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 2.3e-48 199.1 1355 22.4
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.5e-47 194.1 186 58.1
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 9.8e-47 193.7 224 45.1
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 3.7e-46 191.8 186 59.1
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 2.0e-44 186.0 163 58.9
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 2.6e-39 169.1 140 60.7
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.6e-35 154.1 167 57.5
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.6e-35 154.1 167 57.5
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 9.5e-34 150.6 187 47.6
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-26 127.1 105 62.9
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.3e-26 125.6 126 58.7
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 4.3e-26 125.2 92 70.7
MBI15_g38850_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 7.3e-26 124.4 162 50.0
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.6e-25 123.2 73 84.9
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.6e-25 122.1 100 68.0
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.6e-25 122.1 100 68.0
Rhsim06G0100000 Rhododendron simsii HOM05D004602 ORTHO05D005906 4.0e-24 118.6 62 91.9
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 1.5e-23 116.7 155 49.0
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 2.2e-22 112.8 67 85.1
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 2.2e-22 112.8 67 85.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 5.4e-21 108.2 66 78.8
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 6.0e-20 104.8 91 61.5
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.0e-19 104.0 101 57.4
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 4.3e-18 98.6 64 82.8
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 1.6e-17 96.7 61 77.0
PGSC0003DMG400020862 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.8e-16 93.2 88 59.1
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.4e-13 82.8 68 66.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 1.2e-12 80.5 70 64.3
MELO3C029978.2 Cucumis melo HOM05D004602 ORTHO05D000002 6.0e-12 78.2 64 64.1
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 1.7e-11 76.6 79 54.4
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.1e-10 73.9 65 63.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.3e-10 72.0 104 48.1
MBI08_g05534_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-09 70.5 40 90.0


User provided reference genes

Program Settings