Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0109900 Rhododendron simsii HOM05D000001 ORTHO05D023305 1.7e-51 206.8 221 100.0
Rhsim04G0110300 Rhododendron simsii HOM05D000001 ORTHO05D009834 1.5e-23 114.0 64 89.1
CSS0000812 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009834 1.1e-18 97.8 60 73.3
CSS0031234 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009834 1.1e-18 97.8 60 73.3
CSS0018049 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009834 2.7e-17 93.2 61 70.5
TAR362G1136 Trochodendron aralioides HOM05D000001 ORTHO05D009834 2.3e-16 90.1 63 65.1
Oeu009535.1 Olea europaea HOM05D000001 ORTHO05D009834 5.1e-16 89.0 58 70.7
Migut.J01676 Erythranthe guttata HOM05D000001 ORTHO05D009834 6.6e-16 88.6 62 64.5
Nn2g10561 Nelumbo nucifera HOM05D000001 ORTHO05D009834 6.6e-16 88.6 63 66.7
Cpa.g.sc23.61 Carica papaya HOM05D000001 ORTHO05D009834 3.3e-15 86.3 63 58.7
RcHm_v2.0_Chr1g0336671 Rosa chinensis HOM05D000001 ORTHO05D009834 5.6e-15 85.5 62 59.7
Sc07g0006810 Simmondsia chinensis HOM05D000001 ORTHO05D009834 1.2e-14 84.3 63 57.1
ClCG10G016060 Citrullus lanatus HOM05D000001 ORTHO05D009834 1.6e-14 84.0 63 55.6
Prupe.7G042800 Prunus persica HOM05D000001 ORTHO05D009834 1.6e-14 84.0 62 58.1
Atru.chr1.1485 Acer truncatum HOM05D000001 ORTHO05D009834 2.8e-14 83.2 63 57.1
CANSAT11G1180 Cannabis sativa HOM05D000001 ORTHO05D009834 3.6e-14 82.8 62 56.5
Sed0013616 Sechium edule HOM05D000001 ORTHO05D009834 3.6e-14 82.8 63 52.4
Haze_19716 Corylus avellana HOM05D000001 ORTHO05D009834 4.7e-14 82.4 64 59.4
Aa31LG9G16180 Aethionema arabicum HOM05D000001 ORTHO05D009834 8.1e-14 81.6 63 57.1
THA.LOC104816262 Tarenaya hassleriana HOM05D000001 ORTHO05D009834 8.1e-14 81.6 63 55.6
Duzib128G2043 Durio zibethinus HOM05D000001 ORTHO05D009834 1.1e-13 81.3 64 56.2
Sabra16G0044900 Salix brachista HOM05D000001 ORTHO05D009834 1.1e-13 81.3 62 58.1
Cfa016689 Carpinus fangiana HOM05D000001 ORTHO05D009834 1.4e-13 80.9 63 58.7
Actinidia17686 Actinidia chinensis HOM05D000001 ORTHO05D023305 1.8e-13 80.5 54 74.1
CiPaw.09G045600 Carya illinoinensis HOM05D000001 ORTHO05D009834 1.8e-13 80.5 63 58.7
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 5.2e-13 79.0 63 57.1
SpUn0026_0010 Schrenkiella parvula HOM05D000001 ORTHO05D009834 6.8e-13 78.6 63 55.6
Os11g0433101 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D009834 8.9e-13 78.2 60 51.7
Carub.0004s1672 Capsella rubella HOM05D000001 ORTHO05D009834 1.2e-12 77.8 58 56.9
Potri.016G038400 Populus trichocarpa HOM05D000001 ORTHO05D009834 1.2e-12 77.8 62 56.5
Thecc.05G140500 Theobroma cacao HOM05D000001 ORTHO05D009834 1.2e-12 77.8 63 55.6
MELO3C030716.2 Cucumis melo HOM05D000001 ORTHO05D009834 2.0e-12 77.0 63 54.0
BcaB02g09487 Brassica carinata HOM05D000001 ORTHO05D009834 2.6e-12 76.6 58 55.2
TWI34G2032 Tripterygium wilfordii HOM05D000001 ORTHO05D009834 2.6e-12 76.6 63 57.1
CARHR129190 Cardamine hirsuta HOM05D000001 ORTHO05D009834 3.4e-12 76.3 64 51.6
PGR142G3401 Punica granatum HOM05D000001 ORTHO05D009834 5.8e-12 75.5 62 56.5
SGA_v2.0_scaffold105G30321 Striga asiatica HOM05D000001 ORTHO05D009834 5.8e-12 75.5 64 51.6
Gohir.D01G203400 Gossypium hirsutum HOM05D000001 ORTHO05D009834 7.6e-12 75.1 65 50.8
Gorai.002G248100 Gossypium raimondii HOM05D000001 ORTHO05D009834 7.6e-12 75.1 65 50.8
PSO063G2364 Papaver somniferum HOM05D000001 ORTHO05D009834 9.9e-12 74.7 59 59.3
TPR.G28101 Trifolium pratense HOM05D000001 ORTHO05D023305 1.3e-11 74.3 64 51.6
TWI53G0497 Tripterygium wilfordii HOM05D000001 ORTHO05D414003 2.4e-10 70.1 64 50.0
Aqoxy3G03051 Aquilegia oxysepala HOM05D000001 ORTHO05D009834 4.1e-10 69.3 63 47.6
Glyma.09G283000 Glycine max HOM05D000001 ORTHO05D009834 7.1e-10 68.6 64 48.4
PSO170G1060 Papaver somniferum HOM05D000001 ORTHO05D009834 7.1e-10 68.6 59 54.2
Phvul.001G068400 Phaseolus vulgaris HOM05D000001 ORTHO05D009834 7.1e-10 68.6 64 46.9
VMungo0251G0517 Vigna mungo HOM05D000001 ORTHO05D009834 9.2e-10 68.2 60 48.3
HPP92_010467 Vanilla planifolia HOM05D000001 ORTHO05D009834 2.1e-09 67.0 60 48.3
GSVIVG01033596001 Vitis vinifera HOM05D000001 ORTHO05D009834 2.1e-09 67.0 63 50.8
Manes.08G056900 Manihot esculenta HOM05D000001 ORTHO05D009834 1.7e-08 63.9 63 46.0
AT2G35030 Arabidopsis thaliana HOM05D000001 ORTHO05D009834 3.9e-08 62.8 58 44.8
SpUn0157_0020 Schrenkiella parvula HOM05D000001 ORTHO05D009834 3.9e-08 62.8 52 57.7
MBI16_g41357_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 5.1e-08 62.4 63 46.0
Lj4g0024913 Lotus japonicus HOM05D000001 ORTHO05D009834 6.6e-08 62.0 64 46.9
Lj2g0008273 Lotus japonicus HOM05D000001 ORTHO05D009834 8.6e-08 61.6 60 46.7
CAN.G1563.16 Capsicum annuum HOM05D000001 ORTHO05D009834 1.5e-07 60.8 59 45.8
C04p13770 Brassica napus HOM05D000001 ORTHO05D009834 1.9e-07 60.5 58 44.8
AL4G31050 Arabidopsis lyrata HOM05D000001 ORTHO05D009834 2.5e-07 60.1 58 43.1
Cc05_g00520 Coffea canephora HOM05D000001 ORTHO05D009834 3.3e-07 59.7 38 63.2
AL3G32230 Arabidopsis lyrata HOM05D000001 ORTHO05D009502 7.3e-07 58.5 88 33.0
CARHR094280 Cardamine hirsuta HOM05D000001 ORTHO05D009502 9.6e-07 58.2 61 41.0
Solyc04g039940.3 Solanum lycopersicum HOM05D000001 ORTHO05D009834 1.2e-06 57.8 62 41.9
AagrBONN_evm.TU.Sc2ySwM_369.158 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 56 44.6
Dinv30233 Davidia involucrata HOM05D000548 ORTHO05D000003 1.6e-06 57.4 57 40.4
BcaB06g25937 Brassica carinata HOM05D000001 ORTHO05D009502 2.1e-06 57.0 61 39.3
FvH4_7g06880 Fragaria vesca HOM05D000001 ORTHO05D009834 2.1e-06 57.0 37 62.2
FAN06G1742 Fragaria x ananassa HOM05D000001 ORTHO05D009834 2.1e-06 57.0 37 62.2
Sp3g16930 Schrenkiella parvula HOM05D000001 ORTHO05D009502 2.1e-06 57.0 61 41.0
BraA05t21914Z Brassica rapa HOM05D000001 ORTHO05D009502 2.8e-06 56.6 61 39.3
FAN03G0788 Fragaria x ananassa HOM05D000001 ORTHO05D009834 2.8e-06 56.6 63 41.3
HPP92_025385 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.8e-06 56.6 49 51.0
BolC4t22967H Brassica oleracea HOM05D000001 ORTHO05D009834 3.6e-06 56.2 58 41.4
QL07p008722 Quercus lobata HOM05D000001 ORTHO05D009834 4.7e-06 55.8 63 41.3
BcaC05g28564 Brassica carinata HOM05D000001 ORTHO05D009502 6.2e-06 55.5 61 37.7
A05p10680 Brassica napus HOM05D000001 ORTHO05D009834 6.2e-06 55.5 58 41.4
C05p46610 Brassica napus HOM05D000001 ORTHO05D009502 6.2e-06 55.5 61 37.7
BolC5t33389H Brassica oleracea HOM05D000001 ORTHO05D009502 6.2e-06 55.5 61 37.7
BraA05t20008Z Brassica rapa HOM05D000001 ORTHO05D009834 6.2e-06 55.5 58 41.4
ECA240G3091 Erigeron canadensis HOM05D000373 ORTHO05D007048 8.1e-06 55.1 54 46.3
Eucgr.K01631 Eucalyptus grandis HOM05D000001 ORTHO05D009834 8.1e-06 55.1 57 47.4
Thhalv10020206m.g Eutrema salsugineum HOM05D000001 ORTHO05D009502 8.1e-06 55.1 61 37.7
Peaxi162Scf00019g00211 Petunia axillaris HOM05D000001 ORTHO05D010372 8.1e-06 55.1 52 44.2


User provided reference genes

Program Settings