Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 9.3e-235 816.6 450 100.0
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.1e-194 681.0 386 89.6
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 2.4e-190 669.1 367 91.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.0e-190 667.5 367 91.3
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.8e-189 664.1 367 90.2
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.6e-186 655.2 367 89.1
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 2.4e-182 642.5 408 80.6
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.9e-180 635.2 383 83.8
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.2e-178 630.2 367 85.3
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.1e-177 627.1 375 82.7
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.4e-177 626.7 386 81.9
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.1e-177 625.5 386 81.6
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 5.2e-177 624.8 367 84.5
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.6e-176 622.5 370 82.7
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 5.8e-176 621.3 386 81.3
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.9e-174 616.3 366 83.3
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.4e-174 615.9 403 78.4
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 2.4e-174 615.9 386 80.8
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 2.4e-174 615.9 383 81.5
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 3.2e-174 615.5 358 84.9
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 4.1e-174 615.1 384 81.5
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 4.1e-174 615.1 367 82.3
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 5.4e-174 614.8 386 81.1
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 7.0e-174 614.4 363 83.2
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.0e-174 614.4 363 84.0
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 7.0e-174 614.4 386 81.1
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 7.0e-174 614.4 381 81.4
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 9.2e-174 614.0 384 80.2
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.2e-173 613.6 384 81.2
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 4.6e-173 611.7 384 80.5
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 7.8e-173 610.9 426 75.1
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 7.8e-173 610.9 384 80.2
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.0e-172 610.5 387 80.6
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 1.3e-172 610.1 426 75.1
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 3.0e-172 609.0 386 81.1
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.6e-172 607.8 367 81.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 8.6e-172 607.4 384 79.9
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 8.6e-172 607.4 384 79.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.5e-171 606.7 357 84.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 2.5e-171 605.9 365 83.3
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 3.3e-171 605.5 376 81.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 3.3e-171 605.5 384 79.7
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.3e-171 605.1 408 78.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.3e-171 605.1 424 73.1
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 4.3e-171 605.1 387 79.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 9.5e-171 604.0 424 73.3
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 9.5e-171 604.0 385 78.2
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.2e-170 603.6 382 80.4
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.2e-170 603.6 426 74.4
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.2e-170 603.6 384 80.5
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.6e-170 603.2 367 82.3
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.6e-170 603.2 384 79.7
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.6e-170 603.2 367 82.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 2.1e-170 602.8 357 83.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.8e-170 602.4 364 83.2
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 4.7e-170 601.7 426 73.7
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 8.1e-170 600.9 426 73.9
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 8.1e-170 600.9 386 79.5
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.4e-169 600.1 386 79.5
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.3e-169 599.4 387 79.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.3e-169 599.4 376 80.6
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.3e-169 599.4 384 78.4
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 4.0e-169 598.6 367 82.8
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.0e-169 598.6 367 81.7
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 8.9e-169 597.4 363 82.6
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 1.2e-168 597.0 384 78.9
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.5e-168 596.7 386 78.2
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 2.0e-168 596.3 365 81.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.6e-168 595.9 386 79.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.4e-168 595.5 384 77.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 4.4e-168 595.1 383 79.1
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 5.8e-168 594.7 367 81.5
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 7.5e-168 594.3 360 83.3
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 1.3e-167 593.6 384 79.2
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.3e-167 593.6 384 77.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.3e-167 593.6 367 79.3
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 2.9e-167 592.4 367 80.1
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 8.3e-167 590.9 380 78.4
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.9e-166 589.7 383 77.5
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.2e-166 589.0 384 77.1
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.2e-166 589.0 384 77.1
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.2e-166 589.0 384 77.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 1.2e-165 587.0 367 79.8
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 1.2e-165 587.0 367 79.8
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.6e-165 586.6 365 80.0
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.9e-164 582.0 383 78.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.9e-164 582.0 383 78.1
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 5.1e-164 581.6 367 78.2
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 6.6e-164 581.3 386 76.9
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 3.3e-163 578.9 375 78.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 4.3e-163 578.6 367 79.0
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 5.6e-163 578.2 386 76.9
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 7.3e-163 577.8 386 76.7
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 7.3e-163 577.8 386 76.7
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 2.1e-162 576.2 386 76.9
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 2.1e-162 576.2 386 76.7
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 2.1e-162 576.2 386 76.9
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 2.1e-162 576.2 386 76.9
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.6e-162 575.5 386 76.9
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 3.6e-162 575.5 386 76.4
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 6.2e-162 574.7 384 75.8
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.2e-162 574.7 367 78.5
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.4e-161 573.5 384 75.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-161 573.2 386 76.7
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 1.8e-161 573.2 386 76.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.8e-161 573.2 386 76.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 2.4e-161 572.8 386 76.4
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.0e-161 572.0 384 75.8
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.0e-161 572.0 371 79.0
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 6.8e-161 571.2 386 76.2
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.9e-161 570.9 386 76.4
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.5e-160 570.1 384 75.0
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 7.6e-160 567.8 384 75.3
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 7.6e-160 567.8 335 85.4
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 9.9e-160 567.4 384 75.0
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.3e-159 567.0 367 76.6
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 6.4e-159 564.7 372 77.4
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.9e-158 563.1 388 75.0
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 2.4e-158 562.8 370 75.9
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 6.0e-157 558.1 379 76.0
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 1.3e-156 557.0 384 76.6
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 3.0e-156 555.8 366 76.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.1e-155 553.9 384 72.9
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 4.3e-155 552.0 386 73.6
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 6.2e-154 548.1 434 68.2
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 4.4e-152 542.0 367 74.9
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 5.8e-152 541.6 362 77.3
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 6.4e-151 538.1 414 70.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.3e-147 525.8 362 74.6
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 5.6e-147 525.0 417 68.3
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.8e-146 522.7 373 68.1
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-145 519.2 367 73.3
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 5.8e-144 515.0 374 68.2
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.7e-143 513.5 376 67.6
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 2.2e-143 513.1 376 72.6
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 6.4e-143 511.5 323 80.5
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.1e-142 510.8 302 83.8
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.5e-139 499.6 316 78.8
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.0e-137 492.3 384 66.4
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 4.9e-135 485.3 369 68.0
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 9.6e-131 471.1 416 64.7
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 6.2e-130 468.4 391 60.4
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 6.2e-130 468.4 321 74.8
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 2.0e-128 463.4 241 96.3
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 8.4e-127 458.0 390 65.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.2e-126 456.1 370 65.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.5e-125 452.6 290 77.9
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 5.7e-123 445.3 360 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.4e-123 444.9 383 60.8
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.7e-114 416.0 335 65.7
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.9e-103 379.8 271 71.6
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 8.2e-98 361.7 211 85.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 4.1e-97 359.4 213 83.1
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 5.7e-91 339.0 364 52.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.6e-88 330.9 368 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.7e-88 328.6 399 46.9
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 6.8e-84 315.5 273 58.6
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.6e-77 294.3 307 57.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.6e-75 287.0 180 76.7
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 7.8e-64 248.8 393 40.5
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 8.6e-63 245.4 222 59.5
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.1e-60 236.9 284 47.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.2e-59 235.0 133 86.5
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 9.2e-57 225.3 347 40.3
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.7e-55 221.1 219 54.3
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.7e-50 203.4 367 40.9
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.4e-49 201.4 120 80.0
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.3e-47 194.9 183 56.3
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.1e-45 185.7 114 84.2
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.6e-27 127.5 91 71.4
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 8.4e-26 122.5 69 85.5
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.0e-20 103.6 75 65.3
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 2.6e-19 100.9 81 64.2
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 5.8e-19 99.8 54 83.3
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 1.5e-14 85.1 55 74.5
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.5e-14 85.1 81 55.6
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.3e-13 82.0 103 45.6
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 9.0e-12 75.9 60 65.0
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.5e-08 63.9 62 59.7
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 6.7e-07 59.7 55 58.2
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 5.7e-06 56.6 35 71.4


User provided reference genes

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