Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0103700 Rhododendron simsii HOM05D000406 ORTHO05D006918 1.7e-57 225.7 111 100.0
Rhsim04G0104200 Rhododendron simsii HOM05D000406 ORTHO05D006918 1.9e-43 179.1 116 79.3
MSTRG.5564 Avicennia marina HOM05D000406 ORTHO05D006918 3.8e-36 154.8 117 67.5
Dinv16899 Davidia involucrata HOM05D000406 ORTHO05D006918 1.9e-35 152.5 121 66.9
Actinidia11571 Actinidia chinensis HOM05D000406 ORTHO05D006918 3.2e-35 151.8 117 69.2
MSTRG.18994 Avicennia marina HOM05D000406 ORTHO05D006918 7.1e-35 150.6 108 68.5
Sc22g0002550 Simmondsia chinensis HOM05D000406 ORTHO05D006918 7.1e-35 150.6 112 66.1
Duzib084G1089 Durio zibethinus HOM05D000406 ORTHO05D006918 9.3e-35 150.2 115 67.0
TWI74G0181 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 1.2e-34 149.8 108 67.6
TWI77G0395 Tripterygium wilfordii HOM05D000406 ORTHO05D006918 1.2e-34 149.8 108 66.7
Thecc.03G046600 Theobroma cacao HOM05D000406 ORTHO05D006918 1.6e-34 149.4 115 66.1
MELO3C009147.2 Cucumis melo HOM05D000406 ORTHO05D006918 2.1e-34 149.1 114 64.0
CSS0022761 Camellia sinensis var. sinensis HOM05D000406 ORTHO05D006918 3.5e-34 148.3 108 67.6
unitig_699.g19378 Utricularia gibba HOM05D000406 ORTHO05D006918 4.6e-34 147.9 108 66.7
vmacro20297 Vaccinium macrocarpon HOM05D000406 ORTHO05D006918 4.6e-34 147.9 118 64.4
ClCG10G022310 Citrullus lanatus HOM05D000406 ORTHO05D006918 6.0e-34 147.5 108 66.7
Lj2A71T59 Lonicera japonica HOM05D000406 ORTHO05D006918 7.9e-34 147.1 110 67.3
Migut.J00136 Erythranthe guttata HOM05D000406 ORTHO05D006918 1.0e-33 146.7 117 63.2
Gohir.A09G174600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 1.8e-33 146.0 115 65.2
CsaV3_3G033570 Cucumis sativus L. HOM05D000406 ORTHO05D006918 2.3e-33 145.6 108 64.8
Ca_05376_v3 Cicer arietinum L. HOM05D000406 ORTHO05D006918 3.0e-33 145.2 108 65.7
Glyma.02G211700 Glycine max HOM05D000406 ORTHO05D006918 3.0e-33 145.2 107 68.2
Manes.08G094100 Manihot esculenta HOM05D000406 ORTHO05D006918 3.0e-33 145.2 111 64.9
Potri.016G119500 Populus trichocarpa HOM05D000406 ORTHO05D006918 3.0e-33 145.2 112 65.2
TAR623G0521 Trochodendron aralioides HOM05D001399 ORTHO05D001670 3.0e-33 145.2 111 66.7
VMungo0647G1306 Vigna mungo HOM05D000406 ORTHO05D006918 3.0e-33 145.2 108 68.5
Phvul.011G011300 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 3.9e-33 144.8 108 67.6
Sabra16G0115400 Salix brachista HOM05D000406 ORTHO05D006918 3.9e-33 144.8 112 65.2
Sed0017323 Sechium edule HOM05D000406 ORTHO05D006918 3.9e-33 144.8 114 64.0
CiPaw.09G211400 Carya illinoinensis HOM05D000406 ORTHO05D006918 5.1e-33 144.4 109 65.1
PGR031G2785 Punica granatum HOM05D000406 ORTHO05D006918 5.1e-33 144.4 116 59.5
Rhsim05G0217500 Rhododendron simsii HOM05D003030 ORTHO05D003610 5.1e-33 144.4 114 62.3
Aa31LG1G23000 Aethionema arabicum HOM05D000406 ORTHO05D006918 6.7e-33 144.1 110 65.5
Gohir.A10G196500 Gossypium hirsutum HOM05D000406 ORTHO05D006918 6.7e-33 144.1 119 63.0
Gohir.D10G203600 Gossypium hirsutum HOM05D000406 ORTHO05D006918 6.7e-33 144.1 119 63.0
Gorai.011G228400 Gossypium raimondii HOM05D000406 ORTHO05D006918 6.7e-33 144.1 119 63.0
Nn2g10896 Nelumbo nucifera HOM05D000406 ORTHO05D006918 6.7e-33 144.1 107 65.4
Ciclev10012248m.g Citrus clementina HOM05D000406 ORTHO05D006918 8.7e-33 143.7 108 63.9
Thhalv10014166m.g Eutrema salsugineum HOM05D000406 ORTHO05D006918 8.7e-33 143.7 107 66.4
Glyma.14G179300 Glycine max HOM05D000406 ORTHO05D006918 8.7e-33 143.7 108 66.7
Hund14880 Selenicereus undatus HOM05D000406 ORTHO05D006918 8.7e-33 143.7 107 64.5
Medtr4g057850 Medicago truncatula HOM05D000406 ORTHO05D006918 1.1e-32 143.3 108 65.7
Haze_21027 Corylus avellana HOM05D000406 ORTHO05D006918 1.5e-32 142.9 112 65.2
DCAR_028862 Daucus carota HOM05D000406 ORTHO05D006918 1.5e-32 142.9 112 63.4
Prupe.6G280400 Prunus persica HOM05D000406 ORTHO05D006918 1.5e-32 142.9 112 63.4
Sed0006450 Sechium edule HOM05D000406 ORTHO05D006918 1.5e-32 142.9 108 64.8
TPR.G11802 Trifolium pratense HOM05D000406 ORTHO05D006918 1.5e-32 142.9 108 64.8
CAN.G243.19 Capsicum annuum HOM05D000406 ORTHO05D006918 1.9e-32 142.5 117 62.4
Eucgr.A00536 Eucalyptus grandis HOM05D000406 ORTHO05D006918 1.9e-32 142.5 107 66.4
Os03g0292200 Oryza sativa ssp. japonica HOM05D000406 ORTHO05D006918 2.5e-32 142.1 106 66.0
QL07p035036 Quercus lobata HOM05D000406 ORTHO05D006918 3.3e-32 141.7 114 61.4
THA.LOC104827047 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 3.3e-32 141.7 110 63.6
GSVIVG01003933001 Vitis vinifera HOM05D000406 ORTHO05D006918 3.3e-32 141.7 110 64.5
Aqoxy4G02493 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 4.3e-32 141.4 112 64.3
Cfa000488 Carpinus fangiana HOM05D000406 ORTHO05D006918 4.3e-32 141.4 112 63.4
Nitab4.5_0000770g0070 Nicotiana tabacum HOM05D000954 ORTHO05D006918 4.3e-32 141.4 117 62.4
Atru.BG.221.p Acer truncatum HOM05D000406 ORTHO05D006918 5.6e-32 141.0 106 64.2
C03p00510 Brassica napus HOM05D000406 ORTHO05D006918 5.6e-32 141.0 107 64.5
BolC3t12617H Brassica oleracea HOM05D000406 ORTHO05D006918 5.6e-32 141.0 107 64.5
CANSAT35G1945 Cannabis sativa HOM05D000406 ORTHO05D006918 5.6e-32 141.0 108 63.0
Cc11_g00480 Coffea canephora HOM05D000406 ORTHO05D006918 5.6e-32 141.0 108 65.7
Lj1g0007203 Lotus japonicus HOM05D000406 ORTHO05D006918 5.6e-32 141.0 112 65.2
RcHm_v2.0_Chr3g0462571 Rosa chinensis HOM05D000406 ORTHO05D006918 5.6e-32 141.0 112 62.5
BcaB01g06224 Brassica carinata HOM05D000406 ORTHO05D006918 7.4e-32 140.6 107 64.5
HanXRQChr16g0521221 Helianthus annuus HOM05D000406 ORTHO05D006918 7.4e-32 140.6 106 65.1
Lalb_Chr04g0251411 Lupinus albus HOM05D000406 ORTHO05D006918 7.4e-32 140.6 118 61.9
Peaxi162Scf00009g01535 Petunia axillaris HOM05D000406 ORTHO05D006918 7.4e-32 140.6 110 64.5
arahy.Tifrunner.gnm1.ann1.F052KA Arachis hypogaea HOM05D000406 ORTHO05D006918 9.6e-32 140.2 107 64.5
A03p00350 Brassica napus HOM05D000406 ORTHO05D006918 9.6e-32 140.2 107 64.5
BraA03t09426Z Brassica rapa HOM05D000406 ORTHO05D006918 9.6e-32 140.2 107 64.5
CDE12G0752 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 9.6e-32 140.2 106 63.2
AL6G10800 Arabidopsis lyrata HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 64.2
AUR62030475 Chenopodium quinoa HOM05D000406 ORTHO05D006918 1.3e-31 139.8 107 61.7
AUR62030821 Chenopodium quinoa HOM05D000406 ORTHO05D006918 1.3e-31 139.8 107 61.7
FvH4_6g11130 Fragaria vesca HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 66.0
FAN09G3983 Fragaria x ananassa HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 66.0
FAN14G2346 Fragaria x ananassa HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 66.0
MD00G1062100 Malus domestica HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 63.2
MD12G1172100 Malus domestica HOM05D000406 ORTHO05D006918 1.3e-31 139.8 106 64.2
Nitab4.5_0004107g0020 Nicotiana tabacum HOM05D000406 ORTHO05D006918 1.3e-31 139.8 117 62.4
Phvul.008G178900 Phaseolus vulgaris HOM05D000406 ORTHO05D006918 1.3e-31 139.8 108 64.8
PGSC0003DMG400011025 Solanum tuberosum HOM05D000406 ORTHO05D006918 1.3e-31 139.8 117 62.4
Carub.0006s0048 Capsella rubella HOM05D000406 ORTHO05D006918 1.6e-31 139.4 115 59.1
MBI15_g07345_MAGBIO Magnolia biondii HOM05D000406 ORTHO05D006918 1.6e-31 139.4 107 62.6
ATR0681G138 Amborella trichopoda HOM05D000406 ORTHO05D006918 2.1e-31 139.0 110 62.7
arahy.Tifrunner.gnm1.ann1.1L30AV Arachis hypogaea HOM05D000406 ORTHO05D006918 2.1e-31 139.0 107 63.6
Psat0s2362g0040 Pisum sativum HOM05D000406 ORTHO05D006918 2.1e-31 139.0 108 63.0
AT5G01340 Arabidopsis thaliana HOM05D000406 ORTHO05D006918 2.8e-31 138.7 116 59.5
FAN05G0431 Fragaria x ananassa HOM05D000406 ORTHO05D006918 2.8e-31 138.7 106 65.1
SalBow5G0195 Salvia bowleyana HOM05D000406 ORTHO05D006918 2.8e-31 138.7 117 60.7
SalBow5G2160 Salvia bowleyana HOM05D000406 ORTHO05D006918 2.8e-31 138.7 117 60.7
SEGI_05711 Sequoiadendron giganteum HOM05D000406 ORTHO05D006918 3.7e-31 138.3 106 64.2
Solyc10g085220.3 Solanum lycopersicum HOM05D000954 ORTHO05D006918 3.7e-31 138.3 117 62.4
Sopen10g034700 Solanum pennellii HOM05D000406 ORTHO05D006918 3.7e-31 138.3 117 62.4
PSO339G5837 Papaver somniferum HOM05D000406 ORTHO05D006918 4.8e-31 137.9 106 64.2
PSO384G4971 Papaver somniferum HOM05D000406 ORTHO05D006918 4.8e-31 137.9 106 64.2
Sp6g40650 Schrenkiella parvula HOM05D000406 ORTHO05D006918 4.8e-31 137.9 107 65.4
HanXRQChr08g0214861 Helianthus annuus HOM05D000406 ORTHO05D006918 6.2e-31 137.5 114 59.6
Ah.12g058850 Amaranthus hybridus HOM05D000406 ORTHO05D006918 8.1e-31 137.1 107 63.6
THA.LOC104823292 Tarenaya hassleriana HOM05D000406 ORTHO05D006918 1.4e-30 136.3 106 64.2
CARHR211700 Cardamine hirsuta HOM05D000406 ORTHO05D006918 4.0e-30 134.8 96 66.7
Lalb_Chr17g0346091 Lupinus albus HOM05D000406 ORTHO05D006918 4.0e-30 134.8 104 64.4
SHI12849 Sapria himalayana HOM05D000406 ORTHO05D006918 5.3e-30 134.4 110 60.9
HPP92_012033 Vanilla planifolia HOM05D000406 ORTHO05D006918 5.3e-30 134.4 115 59.1
Zm00001eb013460 Zea mays HOM05D000406 ORTHO05D006918 5.3e-30 134.4 96 63.5
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 9.0e-30 133.7 106 61.3
FAN14G5957 Fragaria x ananassa HOM05D000406 ORTHO05D006918 1.2e-29 133.3 95 70.5
CDE06G0909 Ceratophyllum demersum HOM05D000406 ORTHO05D006918 1.5e-29 132.9 106 61.3
Mapoly0001s0082 Marchantia polymorpha HOM05D000406 ORTHO05D006918 2.0e-29 132.5 107 60.7
Cpa.g.sc2485.1 Carica papaya HOM05D000406 ORTHO05D006918 3.4e-29 131.7 92 70.7
EL10Ac5g12535 Beta vulgaris HOM05D000406 ORTHO05D006918 4.5e-29 131.3 107 59.8
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 4.5e-29 131.3 110 59.1
Lsat_1_v5_gn_5_149600 Lactuca sativa HOM05D000406 ORTHO05D006918 7.6e-29 130.6 110 60.9
HanXRQChr09g0253721 Helianthus annuus HOM05D000406 ORTHO05D006918 9.9e-29 130.2 106 63.2
Pp3c11_24700 Physcomitrium patens HOM05D000406 ORTHO05D006918 1.7e-28 129.4 107 60.7
SMO356G0213 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 2.4e-27 125.6 106 60.4
SMO002G0006 Selaginella moellendorffii HOM05D000406 ORTHO05D006918 5.5e-27 124.4 106 59.4
Pp3c3_25290 Physcomitrium patens HOM05D000406 ORTHO05D006918 2.1e-26 122.5 109 60.6
PRCOL_00000280 Prasinoderma coloniale HOM05D000406 ORTHO05D006918 1.3e-25 119.8 116 54.3
Eucgr.A00542 Eucalyptus grandis HOM05D000406 ORTHO05D006918 1.9e-24 115.9 107 55.1
Cre06.g260200 Chlamydomonas reinhardtii HOM05D000406 ORTHO05D006918 1.1e-22 110.2 114 51.8
Aqoxy4G02495 Aquilegia oxysepala HOM05D000406 ORTHO05D006918 1.8e-22 109.4 94 57.4
Cc03_g13790 Coffea canephora HOM05D000406 ORTHO05D006918 3.9e-17 91.7 99 53.5
CBR_g49636 Chara braunii HOM05D000406 ORTHO05D006918 5.1e-17 91.3 92 53.3
Gorai.006G193400 Gossypium raimondii HOM05D000406 ORTHO05D006918 1.0e-12 77.0 54 68.5
Gohir.D09G171650 Gossypium hirsutum HOM05D000406 ORTHO05D006918 8.2e-07 57.4 45 62.2
PSO132G0001 Papaver somniferum HOM05D000177 ORTHO05D304230 3.1e-06 55.5 81 35.8
PSO170G6328 Papaver somniferum HOM05D000177 ORTHO05D002612 3.1e-06 55.5 83 34.9
MCO16G583 Micromonas commoda HOM05D001367 ORTHO05D005289 5.3e-06 54.7 67 44.8


User provided reference genes

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