Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.9e-160 567.8 290 100.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.4e-93 347.1 291 71.8
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.7e-91 340.1 291 69.8
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.2e-91 339.7 291 67.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 4.1e-90 335.5 318 64.8
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 3.6e-70 269.2 290 59.0
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.4e-69 267.3 264 62.5
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.2e-68 264.2 309 56.0
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.4e-68 262.7 292 57.2
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.3e-67 258.5 273 60.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.4e-66 257.3 297 56.6
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 5.0e-64 248.8 269 60.2
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.9e-63 246.9 290 55.9
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.3e-61 240.0 291 54.0
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 8.8e-61 238.0 290 56.6
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.5e-60 235.0 299 51.8
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 8.3e-59 231.5 294 53.7
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.8e-58 230.3 292 51.7
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 3.1e-58 229.6 293 53.6
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 5.4e-58 228.8 291 52.6
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.0e-58 228.4 303 51.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 3.8e-56 222.6 295 52.5
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 5.0e-56 222.2 293 50.5
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.0e-56 222.2 299 51.8
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.5e-55 220.7 300 49.7
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.9e-55 220.3 293 51.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 9.5e-55 218.0 290 53.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.1e-54 216.9 293 50.2
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.1e-54 216.9 303 48.2
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.8e-54 216.5 290 50.3
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 3.6e-54 216.1 298 52.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.4e-53 214.2 293 49.8
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.3e-53 213.4 290 50.3
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.0e-53 213.0 290 50.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 4.0e-53 212.6 293 49.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.2e-53 212.2 291 51.2
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 6.8e-53 211.8 294 51.4
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 4.4e-52 209.1 298 48.7
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.7e-52 208.8 201 62.7
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 5.7e-52 208.8 292 51.0
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.7e-52 208.8 290 49.7
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 2.9e-51 206.5 293 50.5
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.7e-51 206.1 290 48.6
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.9e-51 205.7 290 48.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.4e-51 205.3 295 48.1
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.1e-50 204.5 299 49.2
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.2e-50 203.0 295 49.5
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 3.2e-50 203.0 297 49.8
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.2e-49 201.1 296 49.0
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.7e-49 199.9 292 51.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.7e-49 199.9 295 47.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.6e-49 199.1 291 47.4
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.7e-48 197.2 234 53.4
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.7e-48 197.2 292 48.6
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.9e-48 196.1 291 49.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 5.0e-48 195.7 297 47.5
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 6.6e-48 195.3 340 43.8
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 8.6e-48 194.9 305 45.6
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.1e-47 194.5 294 49.7
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.5e-47 194.1 299 47.5
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.5e-47 193.4 300 46.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 5.6e-47 192.2 305 46.2
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 9.5e-47 191.4 297 50.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 9.5e-47 191.4 286 47.6
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.8e-46 189.9 297 48.8
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 3.6e-46 189.5 280 45.7
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 4.7e-46 189.1 296 48.0
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 8.0e-46 188.3 295 49.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.9e-45 184.9 293 49.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.5e-44 184.1 303 46.5
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 3.4e-44 183.0 303 46.5
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.4e-44 182.6 295 48.5
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 9.8e-44 181.4 295 47.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-43 181.0 294 48.0
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.4e-43 178.7 307 42.0
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 8.3e-43 178.3 291 47.4
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.4e-42 177.6 296 44.3
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.1e-42 176.0 234 49.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.2e-41 174.5 294 46.6
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.6e-41 174.1 295 42.7
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.6e-41 174.1 291 48.1
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.6e-41 174.1 291 46.0
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.0e-41 173.7 290 44.8
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 2.7e-41 173.3 292 47.6
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 4.6e-41 172.6 272 45.2
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.3e-40 171.0 291 45.7
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 3.9e-40 169.5 291 46.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.0e-40 169.1 291 45.4
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.0e-40 169.1 291 45.4
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.1e-39 167.9 291 45.7
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.5e-39 166.8 291 45.0
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-39 166.4 292 45.2
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-39 166.4 292 45.2
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 4.3e-39 166.0 295 45.1
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 5.6e-39 165.6 302 44.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.2e-38 164.5 292 43.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.6e-38 164.1 292 42.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.6e-38 164.1 292 42.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-38 163.7 291 44.0
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 8.1e-38 161.8 292 41.8
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 8.1e-38 161.8 293 43.3
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.1e-38 161.8 287 44.3
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-37 161.4 294 42.9
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.8e-37 160.6 293 43.7
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 1.8e-37 160.6 332 38.6
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.0e-37 159.5 292 42.8
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 5.2e-37 159.1 291 44.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 6.8e-37 158.7 292 42.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 6.8e-37 158.7 292 42.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-36 157.9 289 43.3
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-36 157.5 293 44.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-36 157.5 293 44.4
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.0e-36 157.1 293 44.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.4e-36 156.0 310 39.4
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.5e-36 155.2 304 40.8
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-36 154.8 291 42.3
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-35 154.5 295 41.4
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.3e-35 154.5 291 44.0
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.2e-35 153.7 174 52.3
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.2e-35 153.7 292 42.5
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.9e-35 153.3 291 42.6
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 8.3e-35 151.8 290 43.8
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.9e-34 150.6 297 40.4
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-34 148.7 295 41.4
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.2e-34 148.3 289 41.9
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.6e-33 147.5 293 42.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 7.8e-33 145.2 295 40.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.9e-32 142.9 272 42.3
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 6.6e-32 142.1 290 42.1
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.5e-31 141.0 121 63.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.5e-31 141.0 192 48.4
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 2.5e-31 140.2 291 41.9
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 3.3e-31 139.8 193 48.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 9.5e-31 138.3 293 39.2
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 2.8e-30 136.7 291 41.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 6.2e-30 135.6 290 40.3
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.1e-29 134.8 263 40.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.8e-29 134.0 301 38.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.2e-29 132.5 304 35.9
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.9e-29 131.7 317 37.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.2e-28 131.3 290 40.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.2e-28 131.3 294 39.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.0e-28 130.6 304 36.2
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.4e-28 129.8 316 37.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.8e-27 126.3 293 37.5
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 6.4e-27 125.6 178 47.8
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.1e-26 124.8 289 37.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-26 124.4 290 39.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 4.1e-26 122.9 220 44.1
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.7e-25 120.2 289 37.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.7e-24 117.5 292 35.3
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 5.1e-24 115.9 295 36.6
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.3e-23 112.8 290 36.2
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.3e-23 112.1 94 70.2
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.3e-23 112.1 290 36.2
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.6e-22 110.9 160 46.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 3.6e-22 109.8 297 39.7
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 6.9e-21 105.5 133 51.9
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.9e-21 105.1 191 41.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.4e-20 103.2 292 34.2
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.7e-19 100.9 186 36.6
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.1e-18 98.2 292 33.9
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.2e-18 96.7 283 32.5
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.1e-18 95.5 291 34.0
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 9.3e-18 95.1 80 62.5
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.3e-16 91.3 291 33.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.7e-16 90.9 291 33.0
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.1e-15 88.2 221 33.5
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 6.9e-13 79.0 286 31.5
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 6.9e-13 79.0 396 28.3
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.0e-12 77.4 62 67.7
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.8e-12 75.9 105 43.8
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 7.6e-12 75.5 147 44.2
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 9.9e-12 75.1 237 31.2
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 3.8e-11 73.2 94 43.6
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-10 71.2 84 51.2
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 2.4e-10 70.5 187 32.1
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 7.1e-10 68.9 85 49.4
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.2e-09 68.2 134 36.6
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 7.9e-09 65.5 252 32.9
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.3e-08 63.9 112 42.9
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-07 60.5 78 43.6
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 9.6e-07 58.5 180 29.4
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 3.7e-06 56.6 150 30.7
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 8.1e-06 55.5 57 56.1


User provided reference genes

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