Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.6e-178 627.1 324 100.0
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 7.6e-178 627.1 324 100.0
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 8.8e-126 454.1 324 76.9
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.2e-124 449.5 324 76.9
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 2.4e-123 446.0 326 73.9
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.7e-121 439.9 325 73.5
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 7.2e-120 434.5 324 73.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.9e-114 414.8 324 70.7
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.4e-107 393.7 300 70.0
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.8e-107 393.3 307 69.1
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.4e-107 392.9 298 70.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 4.1e-107 392.1 319 67.4
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 9.1e-107 391.0 328 67.1
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 9.1e-107 391.0 314 67.5
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.2e-106 390.6 322 66.5
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.0e-105 387.5 296 69.9
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.7e-105 386.7 325 66.5
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.2e-105 386.3 326 64.7
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.2e-105 386.3 336 63.4
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 2.9e-105 386.0 322 64.3
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 2.9e-105 386.0 292 70.9
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 3.8e-105 385.6 316 64.9
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.5e-104 383.6 299 69.6
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 1.5e-104 383.6 313 66.5
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.9e-104 383.3 299 69.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.9e-104 383.3 280 73.2
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.9e-104 383.3 311 65.3
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 2.5e-104 382.9 324 65.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.5e-104 382.9 311 65.0
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.5e-104 382.9 311 65.0
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 7.2e-104 381.3 266 75.6
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.6e-103 380.2 296 68.2
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.1e-103 379.8 314 65.3
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 3.6e-103 379.0 306 68.0
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.0e-102 375.6 285 69.5
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 4.0e-102 375.6 303 67.0
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 5.2e-102 375.2 267 71.9
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 5.2e-102 375.2 303 67.3
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 8.8e-102 374.4 266 72.6
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.5e-101 373.6 300 66.3
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 9.8e-101 370.9 312 65.4
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.3e-100 370.5 303 66.7
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 2.2e-100 369.8 260 71.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.2e-100 369.8 312 65.4
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 3.7e-100 369.0 317 63.4
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 3.7e-100 369.0 309 65.0
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.1e-99 367.5 263 71.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 1.4e-99 367.1 310 63.9
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 1.4e-99 367.1 302 63.6
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.8e-99 366.7 320 64.7
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 1.8e-99 366.7 320 63.1
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 7.0e-99 364.8 268 71.3
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-98 364.0 267 71.5
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 1.2e-98 364.0 267 72.3
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 2.7e-98 362.8 260 71.2
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.7e-97 360.1 266 71.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.3e-97 359.8 325 60.0
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 2.3e-97 359.8 285 67.0
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 3.8e-97 359.0 317 60.3
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 3.8e-97 359.0 317 60.3
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 5.0e-97 358.6 303 64.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 3.3e-96 355.9 321 59.8
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.2e-96 355.5 308 62.3
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 1.6e-95 353.6 305 62.3
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 2.8e-95 352.8 313 59.4
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.8e-95 352.8 306 63.4
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 3.6e-95 352.4 326 58.9
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 8.0e-95 351.3 321 58.6
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.0e-95 351.3 267 67.0
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.4e-94 350.5 267 67.8
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.4e-94 350.5 269 68.0
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.8e-94 350.1 319 59.2
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.8e-94 350.1 303 64.4
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.8e-94 350.1 329 60.5
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.3e-94 349.7 278 66.5
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 3.0e-94 349.4 246 71.1
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.0e-94 349.4 324 61.4
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 4.0e-94 349.0 267 67.4
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 4.0e-94 349.0 320 59.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 6.8e-94 348.2 246 70.7
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 8.9e-94 347.8 325 61.2
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 8.9e-94 347.8 309 61.2
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 8.9e-94 347.8 324 61.1
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.2e-93 347.4 305 61.6
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 9.8e-93 344.4 260 65.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.3e-92 344.0 266 68.8
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.8e-92 342.8 312 59.3
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.9e-92 342.0 246 71.5
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.1e-91 340.9 273 63.7
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.8e-91 340.1 281 68.3
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.6e-90 337.0 281 62.6
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 2.0e-90 336.7 326 56.7
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.3e-89 334.0 298 59.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.9e-89 332.4 324 57.1
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 6.6e-89 331.6 305 56.4
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-88 330.9 304 57.9
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 4.3e-88 328.9 305 55.7
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 7.3e-88 328.2 315 58.4
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.2e-87 327.4 259 67.6
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-87 327.0 267 60.7
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.6e-87 327.0 267 60.7
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 1.6e-87 327.0 266 64.7
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 2.1e-87 326.6 267 62.9
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 2.1e-87 326.6 376 51.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.6e-87 325.9 308 62.0
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 4.7e-87 325.5 297 57.2
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.0e-86 324.3 295 57.3
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 1.0e-86 324.3 267 60.3
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 4.0e-86 322.4 306 56.9
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 5.2e-86 322.0 267 60.3
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.2e-85 320.9 303 55.4
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.2e-85 320.9 244 69.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 2.6e-85 319.7 306 56.2
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 4.4e-85 318.9 276 63.0
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.7e-84 317.0 261 63.2
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.9e-84 316.2 288 60.1
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.4e-83 313.9 228 74.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.4e-83 312.0 267 60.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 2.7e-82 309.7 338 52.4
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 3.5e-82 309.3 229 64.2
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 4.6e-82 308.9 315 57.5
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 5.0e-81 305.4 254 63.0
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 8.6e-81 304.7 369 52.8
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.6e-79 300.4 268 60.8
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 6.2e-79 298.5 310 52.6
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.8e-78 297.0 365 52.1
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.8e-78 295.0 227 66.5
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.3e-76 290.8 303 50.8
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 1.7e-76 290.4 271 57.2
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.7e-76 290.4 415 43.9
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 5.1e-73 278.9 304 53.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 6.6e-65 251.9 221 57.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.6e-61 240.0 321 42.4
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.3e-60 237.7 308 41.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.4e-60 235.3 171 65.5
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.2e-58 231.1 434 37.1
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 3.9e-57 226.1 226 55.3
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 6.6e-57 225.3 204 63.7
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 5.8e-53 212.2 242 45.0
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-52 210.7 278 44.2
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 4.9e-52 209.1 238 44.5
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.4e-51 207.6 287 44.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 7.1e-51 205.3 143 70.6
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.0e-49 199.9 143 70.6
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 1.1e-43 181.4 189 47.6
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 3.8e-36 156.4 124 62.1
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 1.2e-26 124.8 138 49.3
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 1.3e-20 104.8 73 74.0
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.1e-18 97.4 107 43.0
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 2.3e-17 94.0 76 60.5
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 1.5e-13 81.3 70 60.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.4e-13 80.1 72 55.6
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 2.5e-11 73.9 50 80.0
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 1.6e-10 71.2 70 44.3
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 2.7e-10 70.5 92 54.3
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 3.6e-10 70.1 52 63.5
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.1e-08 65.1 190 30.0
TAR375G0159 Trochodendron aralioides HOM05D002234 ORTHO05D002254 4.8e-07 59.7 207 29.0
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 3.1e-06 57.0 227 28.2


User provided reference genes

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