Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0095100 Rhododendron simsii HOM05D003299 ORTHO05D003811 8.3e-110 400.6 233 100.0
Rhsim04G0095900 Rhododendron simsii HOM05D003299 ORTHO05D003811 2.1e-28 130.2 172 46.5
Actinidia17282 Actinidia chinensis HOM05D003299 ORTHO05D003811 6.1e-28 128.6 158 48.1
vmacro22988 Vaccinium macrocarpon HOM05D003299 ORTHO05D003811 3.9e-27 125.9 178 47.2
Dinv24058 Davidia involucrata HOM05D003299 ORTHO05D003811 1.5e-26 124.0 158 46.2
Haze_20011 Corylus avellana HOM05D003299 ORTHO05D003811 3.3e-26 122.9 163 46.0
Hma1.2p1_1478F.1_g285970 Hydrangea macrophylla HOM05D003299 ORTHO05D003811 4.4e-26 122.5 217 42.4
CSS0028495 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 7.4e-26 121.7 171 43.3
Duzib093G1666 Durio zibethinus HOM05D003299 ORTHO05D003811 2.2e-25 120.2 157 43.9
COL.COLO4_29346 Corchorus olitorius HOM05D003299 ORTHO05D003811 8.2e-25 118.2 175 41.1
CiPaw.09G029200 Carya illinoinensis HOM05D003299 ORTHO05D003811 3.1e-24 116.3 156 44.2
Ciclev10012859m.g Citrus clementina HOM05D003299 ORTHO05D003811 2.6e-23 113.2 156 42.3
Lj2A365T91 Lonicera japonica HOM05D003299 ORTHO05D003811 4.5e-23 112.5 159 44.0
Psat0s1815g0040 Pisum sativum HOM05D003299 ORTHO05D003811 1.3e-22 110.9 163 41.7
Potri.016G059500 Populus trichocarpa HOM05D003299 ORTHO05D003811 1.3e-22 110.9 171 41.5
VMungo1383G3238 Vigna mungo HOM05D003299 ORTHO05D003811 1.3e-22 110.9 165 42.4
Gohir.A04G051800 Gossypium hirsutum HOM05D003299 ORTHO05D003811 1.7e-22 110.5 166 41.6
PGR004G2598 Punica granatum HOM05D003299 ORTHO05D003811 2.2e-22 110.2 156 41.0
Glyma.03G146000 Glycine max HOM05D003299 ORTHO05D003811 5.0e-22 109.0 161 40.4
SGA_v2.0_scaffold105G30497 Striga asiatica HOM05D003299 ORTHO05D003811 6.5e-22 108.6 175 40.6
TWI53G1909 Tripterygium wilfordii HOM05D003299 ORTHO05D003811 6.5e-22 108.6 163 43.6
Gohir.D04G089600 Gossypium hirsutum HOM05D003299 ORTHO05D003811 1.1e-21 107.8 162 42.0
CANSAT64G0867 Cannabis sativa HOM05D003299 ORTHO05D003811 1.4e-21 107.5 158 40.5
Phvul.001G143700 Phaseolus vulgaris HOM05D003299 ORTHO05D003811 1.9e-21 107.1 159 40.3
Medtr7g093490 Medicago truncatula HOM05D003299 ORTHO05D003811 2.5e-21 106.7 183 37.7
Atru.chr8.1147 Acer truncatum HOM05D003299 ORTHO05D003811 5.5e-21 105.5 158 41.8
CsaV3_4G030690 Cucumis sativus L. HOM05D003299 ORTHO05D003811 5.5e-21 105.5 161 42.2
Lj1g0027959 Lotus japonicus HOM05D003299 ORTHO05D003811 7.2e-21 105.1 158 43.0
FAN02G3918 Fragaria x ananassa HOM05D003299 ORTHO05D003811 9.4e-21 104.8 163 41.7
ClCG04G002040 Citrullus lanatus HOM05D003299 ORTHO05D003811 2.1e-20 103.6 161 41.0
Lsat_1_v5_gn_5_164480 Lactuca sativa HOM05D003299 ORTHO05D003811 2.1e-20 103.6 171 40.4
RcHm_v2.0_Chr3g0479301 Rosa chinensis HOM05D003299 ORTHO05D003811 2.1e-20 103.6 157 41.4
Hund19208 Selenicereus undatus HOM05D003299 ORTHO05D003811 2.7e-20 103.2 163 39.3
Eucgr.A02464 Eucalyptus grandis HOM05D003299 ORTHO05D003811 3.6e-20 102.8 158 39.9
MD12G1055400 Malus domestica HOM05D003299 ORTHO05D003811 3.6e-20 102.8 160 41.2
Migut.J01849 Erythranthe guttata HOM05D003299 ORTHO05D003811 8.0e-20 101.7 165 40.0
Prupe.7G079900 Prunus persica HOM05D003299 ORTHO05D003811 8.0e-20 101.7 157 42.7
Sc06g0007530 Simmondsia chinensis HOM05D003299 ORTHO05D003811 8.0e-20 101.7 159 40.3
Sopen10g029540 Solanum pennellii HOM05D003299 ORTHO05D003811 8.0e-20 101.7 157 40.1
Sabra16G0062300 Salix brachista HOM05D003299 ORTHO05D003811 1.0e-19 101.3 178 39.9
CAN.G960.9 Capsicum annuum HOM05D003299 ORTHO05D003811 1.8e-19 100.5 157 40.8
PSO339G1966 Papaver somniferum HOM05D003299 ORTHO05D003811 1.8e-19 100.5 158 39.9
Sed0027853 Sechium edule HOM05D003299 ORTHO05D003811 1.8e-19 100.5 236 35.6
TPR.G35788 Trifolium pratense HOM05D003299 ORTHO05D003811 1.8e-19 100.5 184 36.4
Aqoxy1G00138 Aquilegia oxysepala HOM05D003299 ORTHO05D003811 2.3e-19 100.1 158 39.9
Cpa.g.sc85.59 Carica papaya HOM05D003299 ORTHO05D003811 3.9e-19 99.4 158 40.5
DCAR_019851 Daucus carota HOM05D003299 ORTHO05D003811 5.2e-19 99.0 156 39.7
FvH4_6g22000 Fragaria vesca HOM05D003299 ORTHO05D003811 5.2e-19 99.0 157 40.1
PGSC0003DMG400011420 Solanum tuberosum HOM05D003299 ORTHO05D003811 5.2e-19 99.0 158 40.5
EL10Ac3g06893 Beta vulgaris HOM05D003299 ORTHO05D003811 6.7e-19 98.6 147 41.5
Nitab4.5_0000105g0200 Nicotiana tabacum HOM05D003299 ORTHO05D003811 6.7e-19 98.6 160 39.4
MD14G1054800 Malus domestica HOM05D003299 ORTHO05D003811 8.8e-19 98.2 166 40.4
Nitab4.5_0002343g0020 Nicotiana tabacum HOM05D003299 ORTHO05D003811 5.7e-18 95.5 160 38.8
Hund24798 Selenicereus undatus HOM05D003299 ORTHO05D003811 7.4e-18 95.1 166 37.3
HanXRQChr01g0010601 Helianthus annuus HOM05D003299 ORTHO05D003811 9.7e-18 94.7 158 40.5
SalBow6G4679 Salvia bowleyana HOM05D003299 ORTHO05D003811 9.7e-18 94.7 158 35.4
HPP92_004382 Vanilla planifolia HOM05D003299 ORTHO05D003811 1.3e-17 94.4 157 38.2
GSVIVG01033478001 Vitis vinifera HOM05D003299 ORTHO05D003811 2.2e-17 93.6 136 42.6
Thhalv10015512m.g Eutrema salsugineum HOM05D003299 ORTHO05D003811 1.1e-16 91.3 158 36.1
PSO384G4474 Papaver somniferum HOM05D003299 ORTHO05D003811 1.1e-16 91.3 156 35.9
Cc06_g15720 Coffea canephora HOM05D003299 ORTHO05D003811 2.4e-16 90.1 138 40.6
Sp6g36180 Schrenkiella parvula HOM05D003299 ORTHO05D003811 2.4e-16 90.1 158 35.4
Lalb_Chr15g0079071 Lupinus albus HOM05D003299 ORTHO05D003811 3.1e-16 89.7 170 36.5
MBI19_g17415_MAGBIO Magnolia biondii HOM05D003299 ORTHO05D003811 5.3e-16 89.0 158 37.3
BcaC06g32385 Brassica carinata HOM05D003299 ORTHO05D003811 9.1e-16 88.2 158 34.2
BolC9t59750H Brassica oleracea HOM05D003299 ORTHO05D003811 9.1e-16 88.2 158 34.2
Peaxi162Scf00003g04536 Petunia axillaris HOM05D003299 ORTHO05D003811 1.6e-15 87.4 156 35.9
unitig_578.g16265 Utricularia gibba HOM05D003299 ORTHO05D003811 1.6e-15 87.4 148 37.2
BcaC06g32553 Brassica carinata HOM05D003299 ORTHO05D003811 2.0e-15 87.0 158 34.2
FAN05G0108 Fragaria x ananassa HOM05D003299 ORTHO05D003811 2.0e-15 87.0 207 34.8
BraA10t45011Z Brassica rapa HOM05D003299 ORTHO05D003811 2.6e-15 86.7 158 33.5
TAR623G0399 Trochodendron aralioides HOM05D003299 ORTHO05D003811 2.6e-15 86.7 151 37.1
THA.LOC104799287 Tarenaya hassleriana HOM05D003299 ORTHO05D003811 3.5e-15 86.3 168 35.7
AL6G16780 Arabidopsis lyrata HOM05D003299 ORTHO05D003811 5.9e-15 85.5 154 35.1
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 1.7e-14 84.0 158 38.0
CARHR206510 Cardamine hirsuta HOM05D003299 ORTHO05D003811 2.9e-14 83.2 156 32.7
HanXRQChr13g0390541 Helianthus annuus HOM05D003299 ORTHO05D003811 3.8e-14 82.8 158 37.3
AUR62011997 Chenopodium quinoa HOM05D003299 ORTHO05D003811 8.5e-14 81.6 149 36.2
AagrBONN_evm.TU.Sc2ySwM_344.3569 Anthoceros agrestis HOM05D003299 ORTHO05D003811 3.2e-13 79.7 150 36.0
Carub.0006s0557 Capsella rubella HOM05D003299 ORTHO05D003811 4.2e-13 79.3 171 33.3
TAR623G0928 Trochodendron aralioides HOM05D003299 ORTHO05D003811 5.5e-13 79.0 159 34.0
C09p70070 Brassica napus HOM05D003299 ORTHO05D003811 7.2e-13 78.6 158 31.0
A10p29700 Brassica napus HOM05D003299 ORTHO05D003811 3.6e-12 76.3 156 30.1
Aa31sc40G30 Aethionema arabicum HOM05D003299 ORTHO05D003811 4.7e-12 75.9 164 33.5
PSO801G0679 Papaver somniferum HOM05D003299 ORTHO05D003811 4.7e-12 75.9 181 32.0
TAR369G0094 Trochodendron aralioides HOM05D003299 ORTHO05D003811 4.7e-12 75.9 37 89.2
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 4.7e-12 75.9 63 66.7
PSO339G5755 Papaver somniferum HOM05D003299 ORTHO05D003811 8.0e-12 75.1 182 31.3
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 1.4e-11 74.3 65 61.5
TWI63G0314 Tripterygium wilfordii HOM05D003299 ORTHO05D003811 1.8e-11 73.9 146 34.2
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 2.3e-11 73.6 65 61.5
Eucgr.J01067 Eucalyptus grandis HOM05D003299 ORTHO05D003811 2.3e-11 73.6 185 32.4
SMO296G0030 Selaginella moellendorffii HOM05D003299 ORTHO05D003811 3.0e-11 73.2 146 32.2
CDE11G0607 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 4.0e-11 72.8 162 34.0
CSS0049751 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 6.7e-11 72.0 179 31.8
ATR0680G138 Amborella trichopoda HOM05D003299 ORTHO05D003811 8.8e-11 71.6 151 31.8
HanXRQChr09g0246861 Helianthus annuus HOM05D003299 ORTHO05D003811 1.2e-10 71.2 144 34.0
Hma1.2p1_0438F.1_g153110 Hydrangea macrophylla HOM05D003299 ORTHO05D003811 1.2e-10 71.2 173 33.5
Ciclev10032804m.g Citrus clementina HOM05D003299 ORTHO05D003811 1.5e-10 70.9 181 30.9
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 1.5e-10 70.9 56 69.6
Potri.008G036400 Populus trichocarpa HOM05D003299 ORTHO05D003811 3.3e-10 69.7 146 33.6
Aqoxy2G01795 Aquilegia oxysepala HOM05D003299 ORTHO05D003811 4.4e-10 69.3 145 34.5
CiPaw.01G270000 Carya illinoinensis HOM05D003299 ORTHO05D003811 5.7e-10 68.9 174 29.9
Thecc.05G174200 Theobroma cacao HOM05D003299 ORTHO05D003811 5.7e-10 68.9 47 66.0
Sabra08G0024500 Salix brachista HOM05D003299 ORTHO05D003811 7.5e-10 68.6 141 34.0
Nitab4.5_0004385g0010 Nicotiana tabacum HOM05D003299 ORTHO05D003811 9.7e-10 68.2 155 31.0
Os02g0819200 Oryza sativa ssp. japonica HOM05D003299 ORTHO05D003811 1.7e-09 67.4 146 32.9
vmacro07125 Vaccinium macrocarpon HOM05D003299 ORTHO05D003811 2.2e-09 67.0 140 33.6
GSVIVG01016235001 Vitis vinifera HOM05D003299 ORTHO05D003811 2.2e-09 67.0 141 34.8
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 2.8e-09 66.6 63 55.6
CDE05G3298 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 3.7e-09 66.2 36 77.8
PGSC0003DMG400007425 Solanum tuberosum HOM05D003299 ORTHO05D003811 3.7e-09 66.2 141 31.2
Cc02_g11050 Coffea canephora HOM05D003299 ORTHO05D003811 4.8e-09 65.9 142 33.8
Peaxi162Scf00296g00715 Petunia axillaris HOM05D003299 ORTHO05D003811 8.2e-09 65.1 36 77.8
Thecc.10G079700 Theobroma cacao HOM05D003299 ORTHO05D003811 8.2e-09 65.1 159 30.2
Mapoly0073s0015 Marchantia polymorpha HOM05D003299 ORTHO05D003811 1.4e-08 64.3 142 32.4
Actinidia38589 Actinidia chinensis HOM05D003299 ORTHO05D003811 1.8e-08 63.9 47 61.7
Lj2A18T48 Lonicera japonica HOM05D003299 ORTHO05D003811 1.8e-08 63.9 39 71.8
QL07p024266 Quercus lobata HOM05D003299 ORTHO05D003811 1.8e-08 63.9 47 66.0
Actinidia06742 Actinidia chinensis HOM05D003299 ORTHO05D003811 2.4e-08 63.5 141 33.3
MD01G1104800 Malus domestica HOM05D003299 ORTHO05D003811 2.4e-08 63.5 35 80.0
Nn2g11556 Nelumbo nucifera HOM05D003299 ORTHO05D003811 2.4e-08 63.5 145 31.0
Solyc11g008450.2 Solanum lycopersicum HOM05D003299 ORTHO05D003811 2.4e-08 63.5 141 31.9
Sopen11g004240 Solanum pennellii HOM05D003299 ORTHO05D003811 2.4e-08 63.5 141 31.9
AL6G13880 Arabidopsis lyrata HOM05D003299 ORTHO05D003811 3.1e-08 63.2 201 30.3
Atru.chr12.828 Acer truncatum HOM05D003299 ORTHO05D003811 5.3e-08 62.4 144 31.2
Gorai.009G311900 Gossypium raimondii HOM05D003299 ORTHO05D003811 5.3e-08 62.4 35 74.3
CARHR209020 Cardamine hirsuta HOM05D003299 ORTHO05D003811 7.0e-08 62.0 142 31.7
FAN06G4627 Fragaria x ananassa HOM05D003299 ORTHO05D003811 7.0e-08 62.0 142 33.1
AT5G04260 Arabidopsis thaliana HOM05D003299 ORTHO05D003811 9.1e-08 61.6 41 68.3
Migut.F01723 Erythranthe guttata HOM05D003299 ORTHO05D003811 9.1e-08 61.6 35 74.3
Carub.0006s0321 Capsella rubella HOM05D003299 ORTHO05D003811 1.2e-07 61.2 41 65.9
FAN01G0418 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.2e-07 61.2 142 33.1
FAN10G4229 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.2e-07 61.2 142 33.1
SGA_v2.0_scaffold51G18707 Striga asiatica HOM05D003299 ORTHO05D003811 1.2e-07 61.2 139 30.2
Manes.09G036900 Manihot esculenta HOM05D003299 ORTHO05D003811 1.6e-07 60.8 47 57.4
THA.LOC104816424 Tarenaya hassleriana HOM05D003299 ORTHO05D003811 1.6e-07 60.8 142 31.0
Phvul.007G239200 Phaseolus vulgaris HOM05D003299 ORTHO05D003811 2.0e-07 60.5 35 71.4
FAN10G1005 Fragaria x ananassa HOM05D003299 ORTHO05D003811 2.7e-07 60.1 142 33.1
Glyma.19G149200 Glycine max HOM05D003299 ORTHO05D003811 2.7e-07 60.1 54 55.6
Gohir.A05G294600 Gossypium hirsutum HOM05D003299 ORTHO05D003811 2.7e-07 60.1 78 42.3
Gohir.D05G295200 Gossypium hirsutum HOM05D003299 ORTHO05D003811 2.7e-07 60.1 35 71.4
DCAR_019092 Daucus carota HOM05D003299 ORTHO05D003811 3.5e-07 59.7 35 68.6
FAN03G3169 Fragaria x ananassa HOM05D003299 ORTHO05D003811 3.5e-07 59.7 142 32.4
BolC9t60001H Brassica oleracea HOM05D003299 ORTHO05D003811 4.5e-07 59.3 41 65.9
BraA10t45234Z Brassica rapa HOM05D003299 ORTHO05D003811 4.5e-07 59.3 41 65.9
CBR_g38474 Chara braunii HOM05D001763 ORTHO05D001810 4.5e-07 59.3 35 68.6
Glyma.02G161200 Glycine max HOM05D003299 ORTHO05D003811 7.7e-07 58.5 35 68.6
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 7.7e-07 58.5 63 52.4
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 7.7e-07 58.5 70 48.6
Lj6g0007833 Lotus japonicus HOM05D003299 ORTHO05D003811 7.7e-07 58.5 35 68.6
Medtr1g050322 Medicago truncatula HOM05D003299 ORTHO05D003811 7.7e-07 58.5 35 71.4
Zm00001eb193260 Zea mays HOM05D003299 ORTHO05D003811 7.7e-07 58.5 149 31.5
CDE11G1023 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 1.0e-06 58.2 40 60.0
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.0e-06 58.2 64 50.0
Sp6g38490 Schrenkiella parvula HOM05D003299 ORTHO05D003811 1.0e-06 58.2 167 29.3
Lalb_Chr21g0313761 Lupinus albus HOM05D003299 ORTHO05D003811 1.3e-06 57.8 35 71.4
Pp3c4_20740 Physcomitrium patens HOM05D003299 ORTHO05D003811 1.3e-06 57.8 38 65.8
RcHm_v2.0_Chr1g0362831 Rosa chinensis HOM05D003299 ORTHO05D003811 1.3e-06 57.8 36 75.0
arahy.Tifrunner.gnm1.ann1.A87VPW Arachis hypogaea HOM05D003299 ORTHO05D003811 1.7e-06 57.4 35 68.6
arahy.Tifrunner.gnm1.ann1.JYTW4X Arachis hypogaea HOM05D003299 ORTHO05D003811 1.7e-06 57.4 35 68.6
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.7e-06 57.4 37 75.7
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 2.2e-06 57.0 63 57.1
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 2.2e-06 57.0 61 52.5
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 2.9e-06 56.6 37 75.7
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 3.8e-06 56.2 57 59.6
Psat6g094000 Pisum sativum HOM05D003299 ORTHO05D003811 3.8e-06 56.2 35 68.6
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 5.0e-06 55.8 64 53.1
Thhalv10014762m.g Eutrema salsugineum HOM05D003299 ORTHO05D003811 5.0e-06 55.8 142 29.6
Gorai.012G099700 Gossypium raimondii HOM05D003299 ORTHO05D003811 5.0e-06 55.8 46 58.7
Nn7g35983 Nelumbo nucifera HOM05D003299 ORTHO05D003811 5.0e-06 55.8 44 61.4
MSTRG.8135 Avicennia marina HOM05D003299 ORTHO05D003811 6.5e-06 55.5 35 65.7
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 8.5e-06 55.1 63 55.6
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 8.5e-06 55.1 63 55.6
HPP92_020760 Vanilla planifolia HOM05D003299 ORTHO05D003811 8.5e-06 55.1 79 36.7


User provided reference genes

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