Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 2.5e-126 456.1 355 100.0
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 1.9e-97 360.1 347 87.0
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 1.6e-96 357.1 351 74.6
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 2.3e-95 353.2 355 65.6
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 2.3e-95 353.2 345 68.7
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 3.9e-95 352.4 345 76.5
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 5.1e-95 352.1 345 76.8
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 7.4e-94 348.2 345 76.5
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.2e-93 346.7 345 76.5
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 4.8e-93 345.5 347 62.8
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 4.8e-93 345.5 384 60.4
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 1.8e-92 343.6 347 64.0
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 9.1e-92 341.3 357 74.5
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 1.2e-91 340.9 346 54.0
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.5e-91 340.5 345 75.1
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.5e-91 339.0 351 74.6
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 5.9e-91 338.6 346 75.4
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 2.2e-90 336.7 353 69.4
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.9e-90 336.3 351 65.2
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 8.5e-90 334.7 347 73.2
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.5e-89 333.2 332 76.5
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 9.4e-89 331.3 347 72.6
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 2.7e-88 329.7 342 75.7
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 3.9e-87 325.9 347 82.4
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 5.2e-87 325.5 353 64.3
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 6.7e-87 325.1 349 71.6
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 2.0e-86 323.6 353 64.0
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 3.3e-86 322.8 378 57.7
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 3.3e-86 322.8 378 57.7
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 6.3e-85 318.5 354 73.7
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 9.1e-84 314.7 377 59.9
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.0e-82 311.2 355 71.3
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 2.2e-82 310.1 356 70.5
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 3.8e-82 309.3 362 69.6
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 3.8e-82 309.3 332 73.5
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 1.9e-81 307.0 353 79.0
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 4.2e-81 305.8 349 77.9
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 4.2e-81 305.8 333 68.8
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 5.5e-81 305.4 348 69.5
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 2.7e-80 303.1 342 79.5
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 3.6e-80 302.8 341 71.0
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 6.1e-80 302.0 341 70.4
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 1.4e-79 300.8 348 69.5
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 1.8e-79 300.4 354 58.5
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 2.3e-79 300.1 342 70.8
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 4.0e-79 299.3 351 68.1
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.2e-78 297.7 378 66.9
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 3.4e-78 296.2 353 60.6
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 5.7e-78 295.4 343 77.8
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 4.8e-77 292.4 357 68.1
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 4.8e-77 292.4 342 77.5
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 6.3e-77 292.0 349 77.4
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.8e-76 290.4 354 67.2
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 4.1e-76 289.3 355 58.9
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 7.0e-76 288.5 346 67.9
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 9.1e-76 288.1 357 59.7
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 1.6e-75 287.3 355 67.0
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.7e-74 283.9 377 65.5
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 2.2e-74 283.5 353 68.0
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 2.7e-72 276.6 351 55.0
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 4.0e-71 272.7 353 56.9
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 6.8e-71 271.9 344 61.3
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 3.4e-70 269.6 352 64.8
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 4.4e-70 269.2 353 63.5
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 4.4e-70 269.2 353 64.0
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 1.8e-68 263.8 353 63.2
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 4.1e-68 262.7 329 46.8
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 2.0e-67 260.4 361 64.3
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 3.5e-67 259.6 353 53.5
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 7.7e-67 258.5 341 73.0
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 6.6e-66 255.4 342 66.1
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 8.6e-66 255.0 353 61.5
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 6.1e-64 248.8 357 63.0
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 8.9e-63 245.0 333 65.2
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.2e-62 244.6 348 69.3
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.2e-62 244.6 348 69.3
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 1.2e-59 234.6 344 56.4
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 5.9e-59 232.3 276 63.8
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.3e-58 231.1 289 72.3
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 2.9e-58 229.9 351 62.4
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 3.9e-58 229.6 361 60.1
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 2.3e-55 220.3 300 60.0
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 1.3e-53 214.5 327 41.3
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 2.9e-53 213.4 136 75.7
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 1.9e-52 210.7 245 75.9
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 1.9e-52 210.7 401 62.3
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.6e-51 207.6 286 65.4
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 6.6e-50 202.2 421 42.0
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 1.5e-49 201.1 150 66.0
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 1.5e-49 201.1 297 75.1
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 1.2e-48 198.0 239 77.0
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 5.2e-47 192.6 345 50.4
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 1.9e-44 184.1 296 61.5
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 3.2e-44 183.3 139 62.6
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 1.0e-42 178.3 154 61.7
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.8e-40 170.2 291 73.2
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 4.7e-40 169.5 278 62.9
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 2.3e-39 167.2 341 59.8
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 3.1e-39 166.8 278 62.9
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 5.2e-39 166.0 247 69.6
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 8.9e-39 165.2 340 49.1
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 4.4e-38 162.9 289 62.6
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 5.8e-38 162.5 273 56.0
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.3e-34 151.4 349 46.7
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 3.8e-29 133.3 126 79.4
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 5.6e-25 119.4 86 66.3
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 9.0e-23 112.1 120 50.0
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 9.3e-20 102.1 75 70.7
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 9.3e-20 102.1 75 70.7
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 2.4e-15 87.4 361 28.5
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 7.1e-12 75.9 156 35.9
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 2.5e-09 67.4 270 23.0
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 3.1e-07 60.5 108 36.1
Medtr1g054600 Medicago truncatula HOM05D002729 ORTHO05D003163 7.6e-06 55.8 32 81.2


User provided reference genes

Program Settings