Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.6e-197 692.6 364 100.0
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.3e-130 469.5 339 80.5
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.5e-78 295.8 318 61.0
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.7e-64 250.8 325 53.2
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.7e-48 197.6 326 45.7
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.8e-48 196.1 326 45.4
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.5e-44 183.7 317 42.9
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 5.5e-44 182.6 329 43.2
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 7.2e-44 182.2 329 42.9
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 9.4e-44 181.8 286 44.8
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 2.1e-43 180.6 317 42.3
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.8e-42 177.6 323 43.0
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 8.8e-42 175.3 304 42.8
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 3.7e-40 169.9 285 42.1
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 4.9e-40 169.5 323 42.1
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.4e-39 167.2 309 40.1
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 9.1e-39 165.2 318 40.9
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.6e-38 164.5 340 39.1
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 2.7e-38 163.7 261 43.3
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 4.5e-38 162.9 304 40.1
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 5.9e-38 162.5 283 43.5
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 5.9e-38 162.5 322 41.6
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 7.7e-38 162.2 274 41.2
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 2.3e-37 160.6 352 38.6
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 3.8e-37 159.8 324 40.1
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 5.0e-37 159.5 261 41.8
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.5e-36 157.9 259 42.5
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.5e-36 157.9 341 38.7
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.9e-36 157.5 323 39.0
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 1.9e-36 157.5 327 37.3
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 2.5e-36 157.1 261 41.0
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 2.5e-36 157.1 261 41.4
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 3.3e-36 156.8 313 37.7
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 9.5e-36 155.2 261 40.6
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 9.5e-36 155.2 261 40.6
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 1.2e-35 154.8 262 39.3
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 2.8e-35 153.7 336 37.5
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.6e-35 153.3 298 38.6
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 6.1e-35 152.5 327 37.9
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 8.0e-35 152.1 310 38.1
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 8.0e-35 152.1 195 50.8
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 8.0e-35 152.1 287 39.4
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 1.0e-34 151.8 319 38.6
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 1.4e-34 151.4 311 38.6
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 1.4e-34 151.4 314 39.2
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.8e-34 151.0 254 41.7
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 1.8e-34 151.0 130 63.1
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.3e-34 150.6 265 39.2
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 4.0e-34 149.8 315 37.8
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 4.0e-34 149.8 313 39.3
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 4.0e-34 149.8 341 36.7
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 5.2e-34 149.4 313 38.7
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 5.2e-34 149.4 320 39.1
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.2e-34 149.4 311 38.6
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 5.2e-34 149.4 313 37.1
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 1.2e-33 148.3 260 39.2
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.2e-33 148.3 321 36.4
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.2e-33 148.3 321 36.4
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 1.2e-33 148.3 318 37.7
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.5e-33 147.9 324 37.7
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.5e-33 147.9 322 38.2
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.5e-33 147.9 279 42.7
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 2.6e-33 147.1 317 37.2
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 2.6e-33 147.1 302 38.7
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.4e-33 146.7 260 39.6
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 3.4e-33 146.7 260 39.6
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 7.5e-33 145.6 339 35.7
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 7.5e-33 145.6 321 38.6
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.3e-32 144.8 302 40.4
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.3e-32 144.8 334 36.2
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 2.9e-32 143.7 261 39.8
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 2.9e-32 143.7 314 37.3
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 3.7e-32 143.3 324 36.1
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 3.7e-32 143.3 318 36.8
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 3.7e-32 143.3 321 38.3
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 8.3e-32 142.1 230 43.5
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 1.4e-31 141.4 263 39.5
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 3.2e-31 140.2 334 35.9
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 4.1e-31 139.8 229 43.7
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 1.2e-30 138.3 258 39.9
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 2.0e-30 137.5 316 35.4
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.7e-30 137.1 334 35.6
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 3.5e-30 136.7 260 39.2
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 4.6e-30 136.3 164 54.3
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 7.8e-30 135.6 261 38.3
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.7e-29 134.4 282 36.9
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 2.9e-29 133.7 262 38.9
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 2.9e-29 133.7 259 37.5
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 5.0e-29 132.9 278 36.0
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 6.6e-29 132.5 324 34.9
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 1.9e-28 131.0 264 38.3
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 3.3e-28 130.2 284 35.2
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.6e-27 127.9 138 55.1
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 4.4e-25 119.8 257 35.8
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 3.7e-24 116.7 130 50.8
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 4.9e-24 116.3 247 35.6
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 1.1e-23 115.2 269 36.4
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 2.4e-23 114.0 247 35.2
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 3.2e-23 113.6 226 40.7
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.2e-22 111.7 316 33.9
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 1.2e-22 111.7 336 30.7
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 1.6e-22 111.3 226 38.1
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.6e-22 111.3 123 50.4
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 3.5e-22 110.2 331 31.7
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 1.7e-21 107.8 178 41.0
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 3.9e-21 106.7 199 40.2
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 2.8e-19 100.5 91 56.0
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 6.2e-19 99.4 180 38.9
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.0e-17 94.4 219 34.2
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.4e-17 93.6 207 43.5
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.9e-16 89.7 207 36.2
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.0e-13 82.0 332 28.0
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.9e-12 77.8 311 26.7
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 8.9e-10 68.9 262 26.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 8.9e-10 68.9 56 71.4
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 2.0e-09 67.8 56 71.4
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 2.6e-09 67.4 58 67.2
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 5.8e-09 66.2 55 70.9
Rhsim10G0085300 Rhododendron simsii HOM05D008219 ORTHO05D038150 6.4e-08 62.8 96 51.0
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 1.2e-06 58.5 196 28.6
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 2.1e-06 57.8 131 35.1
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 3.5e-06 57.0 59 57.6


User provided reference genes

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