Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0092900 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.3e-150 535.0 272 100.0
Rhsim04G0089100 Rhododendron simsii HOM05D005388 ORTHO05D006281 4.2e-129 464.9 304 82.2
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 1.3e-82 310.5 256 65.6
vmacro03839 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 1.2e-72 277.3 289 56.4
Actinidia02320 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.0e-67 260.0 266 57.1
CSS0028564 Camellia sinensis var. sinensis HOM05D005388 ORTHO05D006281 2.7e-67 259.6 271 56.8
Rhsim04G0088400 Rhododendron simsii HOM05D005388 ORTHO05D006281 2.3e-66 256.5 197 70.6
Dinv13961 Davidia involucrata HOM05D005388 ORTHO05D006281 1.1e-65 254.2 269 55.0
Actinidia26868 Actinidia chinensis HOM05D005388 ORTHO05D006281 2.2e-61 240.0 205 62.9
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 1.0e-58 231.1 288 49.7
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 1.0e-58 231.1 265 50.6
Gorai.010G186000 Gossypium raimondii HOM05D005388 ORTHO05D006281 3.9e-58 229.2 263 49.8
Gohir.A06G152900 Gossypium hirsutum HOM05D005388 ORTHO05D006281 5.0e-58 228.8 264 50.4
Gohir.D06G159300 Gossypium hirsutum HOM05D005388 ORTHO05D006281 5.0e-58 228.8 263 49.8
TAR629G3434 Trochodendron aralioides HOM05D005388 ORTHO05D006281 5.6e-57 225.3 273 50.2
Hma1.2p1_0660F.1_g197565 Hydrangea macrophylla HOM05D005388 ORTHO05D006281 2.8e-56 223.0 291 47.1
Thecc.06G231900 Theobroma cacao HOM05D005388 ORTHO05D006281 2.8e-56 223.0 266 49.6
Nn1g07342 Nelumbo nucifera HOM05D005388 ORTHO05D006281 1.0e-55 221.1 265 51.7
QL10p003604 Quercus lobata HOM05D005388 ORTHO05D006281 2.3e-55 219.9 263 50.2
Prupe.4G012000 Prunus persica HOM05D005388 ORTHO05D006281 6.8e-55 218.4 261 48.3
QL03p029835 Quercus lobata HOM05D005388 ORTHO05D006281 6.8e-55 218.4 264 50.8
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 1.2e-54 217.6 267 47.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.6e-54 216.5 261 49.0
Duzib160G0783 Durio zibethinus HOM05D005388 ORTHO05D006281 4.4e-54 215.7 265 48.3
Eucgr.A00642 Eucalyptus grandis HOM05D005388 ORTHO05D006281 5.8e-54 215.3 245 49.8
Manes.03G134302 Manihot esculenta HOM05D005388 ORTHO05D006281 7.5e-54 214.9 265 49.4
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 9.8e-54 214.5 264 47.3
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 2.2e-53 213.4 261 49.8
Ciclev10016118m.g Citrus clementina HOM05D005388 ORTHO05D006281 2.9e-53 213.0 259 51.4
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.9e-53 213.0 263 47.9
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.7e-53 212.6 263 47.9
FAN04G2939 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.9e-52 210.3 261 48.7
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.9e-52 210.3 261 48.3
Duzib235G1331 Durio zibethinus HOM05D005388 ORTHO05D006281 5.4e-52 208.8 266 48.9
Lsat_1_v5_gn_5_121860 Lactuca sativa HOM05D005388 ORTHO05D006281 2.0e-51 206.8 258 47.3
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 2.0e-51 206.8 265 48.7
Sed0023635 Sechium edule HOM05D005388 ORTHO05D006281 2.7e-51 206.5 256 49.2
Potri.012G107500 Populus trichocarpa HOM05D005388 ORTHO05D006281 3.5e-51 206.1 264 49.6
COL.COLO4_31868 Corchorus olitorius HOM05D005388 ORTHO05D006281 1.0e-50 204.5 201 53.7
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 1.0e-50 204.5 262 47.3
THA.LOC104812711 Tarenaya hassleriana HOM05D005388 ORTHO05D006281 1.0e-50 204.5 264 45.8
TAR624G0708 Trochodendron aralioides HOM05D005388 ORTHO05D006281 1.3e-50 204.1 263 50.2
Lalb_Chr22g0358501 Lupinus albus HOM05D005388 ORTHO05D006281 1.7e-50 203.8 271 48.0
Medtr1g007170 Medicago truncatula HOM05D005388 ORTHO05D006281 5.0e-50 202.2 270 47.8
PSO339G1452 Papaver somniferum HOM05D005388 ORTHO05D006281 8.6e-50 201.4 259 48.6
TPR.G17170 Trifolium pratense HOM05D005388 ORTHO05D006281 8.6e-50 201.4 266 48.5
ClCG09G000980 Citrullus lanatus HOM05D005388 ORTHO05D006281 1.5e-49 200.7 258 48.1
Lj1g0004963 Lotus japonicus HOM05D005388 ORTHO05D006281 1.9e-49 200.3 274 45.6
CANSAT56G1966 Cannabis sativa HOM05D005388 ORTHO05D006281 2.5e-49 199.9 256 46.9
MD03G1153200 Malus domestica HOM05D005388 ORTHO05D006281 3.3e-49 199.5 264 48.1
MELO3C024353.2 Cucumis melo HOM05D005388 ORTHO05D006281 5.6e-49 198.7 264 47.3
HPP92_008146 Vanilla planifolia HOM05D005388 ORTHO05D006281 7.3e-49 198.4 246 46.3
Sc04g0003930 Simmondsia chinensis HOM05D005388 ORTHO05D006281 9.5e-49 198.0 262 47.7
PSO384G2339 Papaver somniferum HOM05D005388 ORTHO05D006281 2.1e-48 196.8 262 49.2
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 4.7e-48 195.7 250 49.6
Aqoxy7G03349 Aquilegia oxysepala HOM05D005388 ORTHO05D006281 6.2e-48 195.3 260 49.2
PGSC0003DMG400013269 Solanum tuberosum HOM05D005388 ORTHO05D006281 6.2e-48 195.3 266 47.7
Nitab4.5_0000143g0400 Nicotiana tabacum HOM05D005388 ORTHO05D006281 1.1e-47 194.5 262 46.9
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.4e-47 194.1 174 58.0
CsaV3_7G034450 Cucumis sativus L. HOM05D005388 ORTHO05D006281 1.4e-47 194.1 183 56.8
Peaxi162Scf00558g00317 Petunia axillaris HOM05D005388 ORTHO05D006281 1.4e-47 194.1 260 46.9
Solyc11g012100.2 Solanum lycopersicum HOM05D005388 ORTHO05D006281 1.4e-47 194.1 266 46.2
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 3.1e-47 193.0 260 48.1
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 4.0e-47 192.6 260 48.5
Nitab4.5_0001198g0130 Nicotiana tabacum HOM05D005388 ORTHO05D006281 4.0e-47 192.6 269 47.6
Phvul.001G115300 Phaseolus vulgaris HOM05D005388 ORTHO05D006281 4.0e-47 192.6 237 47.7
Sopen11g006890 Solanum pennellii HOM05D005388 ORTHO05D006281 5.2e-47 192.2 266 46.2
Psat6g035160 Pisum sativum HOM05D005388 ORTHO05D006281 1.5e-46 190.7 199 54.8
AUR62009518 Chenopodium quinoa HOM05D005388 ORTHO05D006281 3.4e-46 189.5 262 43.1
arahy.Tifrunner.gnm1.ann1.506A6S Arachis hypogaea HOM05D005388 ORTHO05D006281 5.8e-46 188.7 176 56.2
arahy.Tifrunner.gnm1.ann1.UC4N4Q Arachis hypogaea HOM05D005388 ORTHO05D006281 5.8e-46 188.7 260 46.5
ECA234G3218 Erigeron canadensis HOM05D005388 ORTHO05D006281 5.8e-46 188.7 184 54.3
HanXRQChr12g0373991 Helianthus annuus HOM05D005388 ORTHO05D006281 5.8e-46 188.7 178 56.7
HanXRQChr12g0374001 Helianthus annuus HOM05D005388 ORTHO05D006281 5.8e-46 188.7 178 56.7
VMungo1383G1280 Vigna mungo HOM05D005388 ORTHO05D006281 1.3e-45 187.6 239 47.3
PGR044G2560 Punica granatum HOM05D005388 ORTHO05D006281 1.1e-44 184.5 233 50.6
AUR62034770 Chenopodium quinoa HOM05D005388 ORTHO05D006281 1.4e-44 184.1 198 51.5
arahy.Tifrunner.gnm1.ann1.KLAQ17 Arachis hypogaea HOM05D005388 ORTHO05D006281 4.1e-44 182.6 261 44.1
arahy.Tifrunner.gnm1.ann1.NIL5QZ Arachis hypogaea HOM05D005388 ORTHO05D006281 4.1e-44 182.6 256 43.8
Migut.M01387 Erythranthe guttata HOM05D005388 ORTHO05D006281 5.4e-44 182.2 203 52.2
Glyma.19G115900 Glycine max HOM05D005388 ORTHO05D006281 7.1e-44 181.8 273 44.0
DCAR_027849 Daucus carota HOM05D005388 ORTHO05D006281 2.1e-43 180.3 234 47.0
Glyma.16G037200 Glycine max HOM05D005388 ORTHO05D006281 2.1e-43 180.3 285 43.2
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 2.7e-43 179.9 240 47.1
CARHR030700 Cardamine hirsuta HOM05D005388 ORTHO05D006281 2.7e-43 179.9 189 51.3
Os05g0270800 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 2.7e-43 179.9 183 52.5
Ca_19224_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.5e-43 179.5 216 47.2
Haze_05515 Corylus avellana HOM05D005388 ORTHO05D006281 4.6e-43 179.1 292 41.8
Os08g0500900 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 7.8e-43 178.3 178 52.8
TPR.G24522 Trifolium pratense HOM05D005388 ORTHO05D006281 1.7e-42 177.2 171 56.7
ATR0561G011 Amborella trichopoda HOM05D005388 ORTHO05D006281 3.0e-42 176.4 176 51.7
EL10Ac5g11305 Beta vulgaris HOM05D005388 ORTHO05D006281 5.1e-42 175.6 258 42.6
AT1G31220 Arabidopsis thaliana HOM05D005388 ORTHO05D006281 6.6e-42 175.3 257 42.4
Sp1g27030 Schrenkiella parvula HOM05D005388 ORTHO05D006281 8.6e-42 174.9 260 43.5
Zm00001eb082710 Zea mays HOM05D005388 ORTHO05D006281 2.5e-41 173.3 175 52.0
AL1G49260 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 3.3e-41 172.9 260 39.6
Carub.0001s2962 Capsella rubella HOM05D005388 ORTHO05D006281 4.3e-41 172.6 189 49.7
AL2G29970 Arabidopsis lyrata HOM05D005388 ORTHO05D006281 5.6e-41 172.2 263 40.7
BcaB07g32784 Brassica carinata HOM05D005388 ORTHO05D006281 5.6e-41 172.2 183 51.4
BolC5t31778H Brassica oleracea HOM05D005388 ORTHO05D006281 1.6e-40 170.6 240 42.9
Ah.00g000100 Amaranthus hybridus HOM05D005388 ORTHO05D006281 6.2e-40 168.7 198 48.5
A09p35020 Brassica napus HOM05D005388 ORTHO05D006281 6.2e-40 168.7 176 52.3
Thhalv10008369m.g Eutrema salsugineum HOM05D005388 ORTHO05D006281 6.2e-40 168.7 245 43.3
SMO353G0366 Selaginella moellendorffii HOM05D005388 ORTHO05D006281 6.2e-40 168.7 176 50.6
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 6.2e-40 168.7 197 48.2
BraA09t39033Z Brassica rapa HOM05D005388 ORTHO05D006281 1.8e-39 167.2 239 43.9
BcaC05g27152 Brassica carinata HOM05D005388 ORTHO05D006281 4.0e-39 166.0 240 42.1
C05p30410 Brassica napus HOM05D005388 ORTHO05D006281 5.2e-39 165.6 240 42.1
Mapoly0084s0080 Marchantia polymorpha HOM05D005388 ORTHO05D006281 7.6e-38 161.8 173 49.1
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 8.4e-37 158.3 164 52.4
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 3.2e-36 156.4 96 77.1
Aa31LG9G16020 Aethionema arabicum HOM05D005388 ORTHO05D006281 4.1e-36 156.0 214 44.4
Hund08510 Selenicereus undatus HOM05D005388 ORTHO05D006281 4.1e-36 156.0 101 72.3
CBR_g45412 Chara braunii HOM05D005388 ORTHO05D006281 3.5e-35 152.9 183 44.8
Pp3c13_14970 Physcomitrium patens HOM05D005388 ORTHO05D006281 6.0e-35 152.1 208 41.3
VMungo0647G0909 Vigna mungo HOM05D005388 ORTHO05D006281 7.8e-35 151.8 91 76.9
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.7e-34 150.6 221 41.2
Os08g0501132 Oryza sativa ssp. japonica HOM05D005388 ORTHO05D006281 3.0e-34 149.8 97 68.0
CDE04G0494 Ceratophyllum demersum HOM05D005388 ORTHO05D006281 4.3e-33 146.0 269 38.3
Cre12.g550700 Chlamydomonas reinhardtii HOM05D005388 ORTHO05D006281 2.8e-32 143.3 176 45.5
Ca_03362_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 3.2e-28 129.8 81 74.1
MCO11G941 Micromonas commoda HOM05D005388 ORTHO05D006281 2.7e-27 126.7 175 40.6
Rhsim04G0088200 Rhododendron simsii HOM05D005388 ORTHO05D006281 3.9e-26 122.9 60 100.0
Lj2A262G50 Lonicera japonica HOM05D005388 ORTHO05D006281 1.6e-24 117.5 197 41.6
Migut.H01601 Erythranthe guttata HOM05D005388 ORTHO05D006281 9.0e-23 111.7 197 38.6
FAN24G1366 Fragaria x ananassa HOM05D001252 ORTHO05D006281 9.9e-22 108.2 198 39.4
PRCOL_00005535 Prasinoderma coloniale HOM05D005388 ORTHO05D006281 9.9e-22 108.2 173 39.3
FAN04G2929 Fragaria x ananassa HOM05D001252 ORTHO05D006281 3.8e-21 106.3 198 38.9
FAN11G1084 Fragaria x ananassa HOM05D001252 ORTHO05D006281 3.8e-21 106.3 198 38.9
FAN13G0148 Fragaria x ananassa HOM05D001252 ORTHO05D001263 3.8e-21 106.3 198 38.9
DCAR_016081 Daucus carota HOM05D005388 ORTHO05D006281 5.4e-20 102.4 57 84.2
FAN11G2435 Fragaria x ananassa HOM05D000566 ORTHO05D000686 2.8e-16 90.1 137 40.1
Haze_05509 Corylus avellana HOM05D005388 ORTHO05D006281 1.9e-12 77.4 207 31.9
MSTRG.14615 Avicennia marina HOM05D005388 ORTHO05D006281 2.3e-10 70.5 165 36.4
SalBow1G2889 Salvia bowleyana HOM05D035322 ORTHO05D006281 2.5e-09 67.0 37 75.7
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 1.3e-08 64.7 171 27.5
AagrBONN_evm.TU.Sc2ySwM_369.551 Anthoceros agrestis HOM05D005388 ORTHO05D006281 8.1e-08 62.0 143 28.7
Hund02539 Selenicereus undatus HOM05D005388 ORTHO05D006281 2.4e-07 60.5 168 30.4


User provided reference genes

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