Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0077300 Rhododendron simsii HOM05D000173 ORTHO05D340215 7.4e-62 240.4 121 100.0
vmacro09801 Vaccinium macrocarpon HOM05D000173 ORTHO05D005736 6.6e-10 67.8 36 91.7
Rhsim04G0007300 Rhododendron simsii HOM05D000173 ORTHO05D005736 8.6e-10 67.4 36 91.7
Actinidia03673 Actinidia chinensis HOM05D000173 ORTHO05D005736 1.9e-09 66.2 36 86.1
Aqoxy4G02260 Aquilegia oxysepala HOM05D000173 ORTHO05D005736 3.3e-09 65.5 36 83.3
GSVIVG01014840001 Vitis vinifera HOM05D000173 ORTHO05D005736 3.3e-09 65.5 36 83.3
Rhsim12G0038900 Rhododendron simsii HOM05D000631 ORTHO05D000524 4.3e-09 65.1 73 53.4
TAR626G0284 Trochodendron aralioides HOM05D000173 ORTHO05D005736 7.3e-09 64.3 36 83.3
CSS0004771 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 9.5e-09 63.9 36 80.6
CSS0020852 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D005736 9.5e-09 63.9 36 80.6
Actinidia20424 Actinidia chinensis HOM05D000173 ORTHO05D005736 1.2e-08 63.5 34 88.2
Cpa.g.sc12.72 Carica papaya HOM05D000173 ORTHO05D005736 1.6e-08 63.2 36 80.6
COL.COLO4_07785 Corchorus olitorius HOM05D000173 ORTHO05D005736 1.6e-08 63.2 36 77.8
Cfa016956 Carpinus fangiana HOM05D000173 ORTHO05D005736 2.1e-08 62.8 36 77.8
Rhsim12G0039000 Rhododendron simsii HOM05D000631 ORTHO05D000524 2.8e-08 62.4 42 73.8
Gohir.A13G128700 Gossypium hirsutum HOM05D000173 ORTHO05D005736 3.6e-08 62.0 36 75.0
Gohir.D13G132100 Gossypium hirsutum HOM05D000173 ORTHO05D005736 3.6e-08 62.0 36 75.0
Gorai.013G148100 Gossypium raimondii HOM05D000173 ORTHO05D005736 3.6e-08 62.0 36 75.0
PSO541G2314 Papaver somniferum HOM05D000173 ORTHO05D005736 3.6e-08 62.0 35 80.0
Thecc.07G002000 Theobroma cacao HOM05D000173 ORTHO05D005736 3.6e-08 62.0 36 75.0
MBI15_g26862_MAGBIO Magnolia biondii HOM05D000173 ORTHO05D005736 4.7e-08 61.6 36 77.8
MD00G1070700 Malus domestica HOM05D000173 ORTHO05D005736 4.7e-08 61.6 36 77.8
MD11G1045700 Malus domestica HOM05D000173 ORTHO05D005736 4.7e-08 61.6 36 77.8
arahy.Tifrunner.gnm1.ann1.1AZN13 Arachis hypogaea HOM05D000173 ORTHO05D005736 6.2e-08 61.2 36 75.0
arahy.Tifrunner.gnm1.ann1.YXC3CU Arachis hypogaea HOM05D000173 ORTHO05D005736 6.2e-08 61.2 36 75.0
Duzib268G0641 Durio zibethinus HOM05D000173 ORTHO05D005736 6.2e-08 61.2 36 75.0
FAN25G2199 Fragaria x ananassa HOM05D000173 ORTHO05D005736 6.2e-08 61.2 36 77.8
Sed0017311 Sechium edule HOM05D000173 ORTHO05D005736 6.2e-08 61.2 36 72.2
MD06G1036700 Malus domestica HOM05D000173 ORTHO05D005736 8.1e-08 60.8 35 80.0
Peaxi162Scf00232g00532 Petunia axillaris HOM05D000173 ORTHO05D005736 8.1e-08 60.8 36 75.0
TWI39G0957 Tripterygium wilfordii HOM05D000173 ORTHO05D005736 8.1e-08 60.8 36 77.8
CANSAT11G1741 Cannabis sativa HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 75.0
CDE03G0171 Ceratophyllum demersum HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 77.8
MELO3C014127.2 Cucumis melo HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 75.0
CsaV3_3G004340 Cucumis sativus L. HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 75.0
Dinv40911 Davidia involucrata HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 75.0
PSO675G5735 Papaver somniferum HOM05D000173 ORTHO05D005736 1.1e-07 60.5 35 77.1
Sabra16G0320200 Salix brachista HOM05D000173 ORTHO05D005736 1.1e-07 60.5 36 75.0
vmacro01114 Vaccinium macrocarpon HOM05D000631 ORTHO05D000524 1.1e-07 60.5 42 71.4
VMungo0251G2140 Vigna mungo HOM05D000173 ORTHO05D005736 1.1e-07 60.5 38 68.4
FvH4_3g41660 Fragaria vesca HOM05D000173 ORTHO05D005736 1.4e-07 60.1 36 75.0
FAN11G3973 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.4e-07 60.1 36 75.0
Lj1A900G25 Lonicera japonica HOM05D000173 ORTHO05D005736 1.4e-07 60.1 36 77.8
MD03G1042500 Malus domestica HOM05D000173 ORTHO05D005736 1.4e-07 60.1 36 75.0
Prupe.6G034100 Prunus persica HOM05D000173 ORTHO05D005736 1.4e-07 60.1 36 75.0
QL08p000620 Quercus lobata HOM05D000173 ORTHO05D005736 1.4e-07 60.1 33 81.8
Atru.chr2.3890 Acer truncatum HOM05D000173 ORTHO05D005736 1.8e-07 59.7 36 72.2
FAN16G3599 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.8e-07 59.7 36 75.0
FAN21G0887 Fragaria x ananassa HOM05D000173 ORTHO05D005736 1.8e-07 59.7 36 75.0
Lalb_Chr09g0334651 Lupinus albus HOM05D000173 ORTHO05D005736 1.8e-07 59.7 36 72.2
Ca_14141_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 2.3e-07 59.3 36 72.2
SalBow8G1092 Salvia bowleyana HOM05D000173 ORTHO05D005736 2.3e-07 59.3 36 75.0
AUR62017175 Chenopodium quinoa HOM05D000173 ORTHO05D005736 3.1e-07 58.9 36 75.0
AUR62035629 Chenopodium quinoa HOM05D000173 ORTHO05D005736 3.1e-07 58.9 36 75.0
Dinv19646 Davidia involucrata HOM05D000173 ORTHO05D005736 3.1e-07 58.9 36 77.8
Manes.05G204900 Manihot esculenta HOM05D000173 ORTHO05D005736 3.1e-07 58.9 36 72.2
Nitab4.5_0008062g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005736 3.1e-07 58.9 36 72.2
THA.LOC104811699 Tarenaya hassleriana HOM05D000173 ORTHO05D005736 3.1e-07 58.9 42 69.0
ClCG10G004520 Citrullus lanatus HOM05D000173 ORTHO05D005736 4.0e-07 58.5 36 72.2
Nitab4.5_0000152g0070 Nicotiana tabacum HOM05D000173 ORTHO05D005736 4.0e-07 58.5 36 72.2
Potri.001G471700 Populus trichocarpa HOM05D000173 ORTHO05D005736 4.0e-07 58.5 36 72.2
Eucgr.F01992 Eucalyptus grandis HOM05D000173 ORTHO05D005736 5.2e-07 58.2 36 72.2
Glyma.04G112600 Glycine max HOM05D000173 ORTHO05D005736 5.2e-07 58.2 36 72.2
Ah.06g184110 Amaranthus hybridus HOM05D000173 ORTHO05D005736 6.8e-07 57.8 36 72.2
arahy.Tifrunner.gnm1.ann1.9SE8JW Arachis hypogaea HOM05D000173 ORTHO05D005736 6.8e-07 57.8 36 69.4
arahy.Tifrunner.gnm1.ann1.D2KAQB Arachis hypogaea HOM05D000173 ORTHO05D005736 6.8e-07 57.8 36 69.4
A02p09320 Brassica napus HOM05D000173 ORTHO05D005736 6.8e-07 57.8 38 68.4
C02p15450 Brassica napus HOM05D000173 ORTHO05D005736 6.8e-07 57.8 38 68.4
BolC2t07659H Brassica oleracea HOM05D000173 ORTHO05D005736 6.8e-07 57.8 38 68.4
Oeu005538.1 Olea europaea HOM05D000173 ORTHO05D005736 6.8e-07 57.8 36 72.2
PGR083G1684 Punica granatum HOM05D000173 ORTHO05D005736 6.8e-07 57.8 36 69.4
AT5G56180 Arabidopsis thaliana HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
CAN.G337.84 Capsicum annuum HOM05D000173 ORTHO05D005736 8.9e-07 57.4 33 78.8
CAN.G623.72 Capsicum annuum HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
Glyma.16G096700 Glycine max HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
HanXRQChr08g0232901 Helianthus annuus HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 69.4
Lj3g0003303 Lotus japonicus HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 69.4
Nn1g07638 Nelumbo nucifera HOM05D000173 ORTHO05D005736 8.9e-07 57.4 33 75.8
Sc10g0008190 Simmondsia chinensis HOM05D000173 ORTHO05D005736 8.9e-07 57.4 35 74.3
Solyc07g066120.3 Solanum lycopersicum HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
Sopen07g034300 Solanum pennellii HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
PGSC0003DMG400022148 Solanum tuberosum HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 72.2
unitig_8.g4598 Utricularia gibba HOM05D000173 ORTHO05D005736 8.9e-07 57.4 36 69.4
Migut.M01585 Erythranthe guttata HOM05D000173 ORTHO05D005736 1.2e-06 57.0 36 69.4
Lj4g0017123 Lotus japonicus HOM05D000173 ORTHO05D005736 1.2e-06 57.0 36 69.4
Phvul.003G274900 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 1.2e-06 57.0 36 69.4
Potri.001G471400 Populus trichocarpa HOM05D000173 ORTHO05D005736 1.2e-06 57.0 36 66.7
ATR0751G083 Amborella trichopoda HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 66.7
AL8G31810 Arabidopsis lyrata HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
BcaB08g35984 Brassica carinata HOM05D000173 ORTHO05D005736 1.5e-06 56.6 33 78.8
BcaB08g35985 Brassica carinata HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
CARHR269580 Cardamine hirsuta HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
Thhalv10013450m.g Eutrema salsugineum HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
Lsat_1_v5_gn_5_540 Lactuca sativa HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 69.4
MD11G1044700 Malus domestica HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
MD11G1045300 Malus domestica HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 72.2
VMungo1080G0826 Vigna mungo HOM05D000173 ORTHO05D005736 1.5e-06 56.6 36 66.7
MSTRG.7039 Avicennia marina HOM05D000173 ORTHO05D005736 2.0e-06 56.2 36 69.4
Lalb_Chr04g0259451 Lupinus albus HOM05D000173 ORTHO05D005736 2.0e-06 56.2 36 66.7
Medtr8g070520 Medicago truncatula HOM05D000173 ORTHO05D005736 2.0e-06 56.2 36 69.4
PSO782G1015 Papaver somniferum HOM05D000173 ORTHO05D005736 2.0e-06 56.2 34 70.6
RcHm_v2.0_Chr5g0074751 Rosa chinensis HOM05D000173 ORTHO05D005736 2.0e-06 56.2 36 69.4
Sp6g18030 Schrenkiella parvula HOM05D000173 ORTHO05D005736 2.0e-06 56.2 36 72.2
Ca_14094_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 2.6e-06 55.8 44 56.8
Ciclev10008155m.g Citrus clementina HOM05D000173 ORTHO05D005736 2.6e-06 55.8 36 69.4
Lj8C183T9 Lonicera japonica HOM05D000173 ORTHO05D005736 2.6e-06 55.8 36 72.2
Phvul.005G003800 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 2.6e-06 55.8 36 66.7
Psat5g231680 Pisum sativum HOM05D000173 ORTHO05D005736 2.6e-06 55.8 36 63.9
Zm00001eb066950 Zea mays HOM05D000173 ORTHO05D005736 2.6e-06 55.8 36 63.9
Medtr3g010170 Medicago truncatula HOM05D000173 ORTHO05D005736 3.4e-06 55.5 36 63.9
Sabra16G0320000 Salix brachista HOM05D000173 ORTHO05D005736 3.4e-06 55.5 36 63.9
Hma1.2p1_0321F.1_g124320 Hydrangea macrophylla HOM05D000173 ORTHO05D005736 4.4e-06 55.1 36 72.2
SEGI_17334 Sequoiadendron giganteum HOM05D000173 ORTHO05D005736 4.4e-06 55.1 36 66.7
Aa31LG3G12090 Aethionema arabicum HOM05D000173 ORTHO05D005736 5.8e-06 54.7 36 69.4
Sc04g0009670 Simmondsia chinensis HOM05D000631 ORTHO05D000524 7.6e-06 54.3 41 61.0
TPR.G16712 Trifolium pratense HOM05D000173 ORTHO05D005736 7.6e-06 54.3 36 66.7
ECA246G0903 Erigeron canadensis HOM05D000173 ORTHO05D005736 9.9e-06 53.9 36 63.9
Psat4g111560 Pisum sativum HOM05D000173 ORTHO05D005736 9.9e-06 53.9 36 63.9
TPR.G6164 Trifolium pratense HOM05D000173 ORTHO05D005736 9.9e-06 53.9 36 66.7


User provided reference genes

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