Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 1.4e-36 158.3 84 100.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.1e-28 132.1 84 78.6
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 5.5e-28 129.8 84 78.6
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 6.1e-27 126.3 80 80.0
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 4.4e-25 120.2 81 71.6
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 7.5e-25 119.4 83 71.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.5e-25 119.4 81 71.6
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.7e-25 119.0 80 72.5
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.3e-24 118.6 80 72.5
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.2e-24 117.9 79 73.4
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 6.3e-24 116.3 80 71.2
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.4e-23 114.4 82 69.5
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 2.4e-23 114.4 82 68.3
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.4e-23 114.4 79 70.9
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 7.0e-23 112.8 80 68.8
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 7.0e-23 112.8 82 68.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 7.0e-23 112.8 81 69.1
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 9.1e-23 112.5 75 76.0
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 2.7e-22 110.9 82 67.1
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 4.5e-22 110.2 83 62.7
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 4.5e-22 110.2 79 68.4
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 4.5e-22 110.2 81 67.9
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.0e-21 109.0 80 67.5
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.3e-21 108.6 81 65.4
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.7e-21 108.2 83 65.1
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.8e-21 107.1 80 65.0
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.5e-20 105.1 84 63.1
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.9e-20 104.8 81 63.0
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 1.9e-20 104.8 82 62.2
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 5.5e-20 103.2 81 60.5
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 9.4e-20 102.4 81 59.3
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 9.4e-20 102.4 81 59.3
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 9.4e-20 102.4 82 58.5
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.6e-19 101.7 83 57.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 4.7e-19 100.1 80 61.2
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 6.1e-19 99.8 78 65.4
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-18 99.0 82 59.8
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.4e-18 98.6 76 63.2
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.4e-18 98.6 79 60.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.4e-18 98.6 82 61.0
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 2.3e-18 97.8 81 60.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 4.0e-18 97.1 81 56.8
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 5.2e-18 96.7 80 58.8
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 5.2e-18 96.7 80 57.5
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 5.2e-18 96.7 77 57.1
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 6.8e-18 96.3 79 60.8
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 6.8e-18 96.3 84 56.0
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 6.8e-18 96.3 84 56.0
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 6.8e-18 96.3 80 60.0
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 8.8e-18 95.9 82 57.3
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 8.8e-18 95.9 80 58.8
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 8.8e-18 95.9 84 58.3
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.8e-18 95.9 84 54.8
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.2e-17 95.5 78 61.5
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.5e-17 95.1 82 56.1
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.5e-17 95.1 76 60.5
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.0e-17 94.7 81 59.3
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 3.4e-17 94.0 80 58.8
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 3.4e-17 94.0 81 55.6
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 4.4e-17 93.6 77 58.4
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 7.5e-17 92.8 84 54.8
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 7.5e-17 92.8 81 55.6
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.7e-16 91.7 79 55.7
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 3.7e-16 90.5 79 53.2
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 3.7e-16 90.5 79 55.7
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.7e-16 90.5 80 56.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 4.8e-16 90.1 83 50.6
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 6.3e-16 89.7 76 57.9
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.1e-15 89.0 77 54.5
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.4e-15 88.6 71 62.0
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.8e-15 88.2 80 56.2
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 3.1e-15 87.4 81 49.4
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.1e-15 87.0 77 55.8
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 5.4e-15 86.7 77 57.1
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 5.4e-15 86.7 80 53.8
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 7.0e-15 86.3 82 50.0
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 7.0e-15 86.3 81 53.1
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.2e-14 85.5 78 53.8
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 53.8
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.0e-14 84.7 80 53.8
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.7e-14 84.3 80 57.5
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 4.5e-14 83.6 78 53.8
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 5.9e-14 83.2 81 51.9
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 1.0e-13 82.4 78 53.8
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.9e-13 80.9 76 53.9
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 3.8e-13 80.5 79 50.6
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 8.6e-13 79.3 78 51.3
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 8.6e-13 79.3 79 50.6
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.1e-12 79.0 78 50.0
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.1e-12 79.0 74 50.0
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 2.5e-12 77.8 80 47.5
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 5.5e-12 76.6 80 50.0
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 5.5e-12 76.6 73 50.7
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.2e-11 75.5 77 49.4
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.2e-11 75.5 77 49.4
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.6e-11 75.1 73 52.1
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.1e-11 74.7 48 72.9
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.1e-11 74.7 74 51.4
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.8e-11 74.3 82 51.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 3.6e-11 73.9 77 50.6
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 3.6e-11 73.9 76 50.0
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 3.6e-11 73.9 49 71.4
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 4.7e-11 73.6 69 53.6
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 6.1e-11 73.2 72 48.6
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 1.0e-10 72.4 70 51.4
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.4e-10 72.0 77 49.4
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.4e-10 72.0 77 49.4
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.4e-10 72.0 44 75.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.4e-10 72.0 76 50.0
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.4e-10 72.0 80 47.5
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 3.0e-10 70.9 77 48.1
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 3.0e-10 70.9 77 48.1
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 6.8e-10 69.7 77 48.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 6.8e-10 69.7 77 48.1
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.8e-10 69.7 48 64.6
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.8e-10 69.7 48 64.6
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 1.2e-09 68.9 77 46.8
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.5e-09 68.6 77 46.8
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.5e-09 68.6 48 66.7
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 2.0e-09 68.2 39 76.9
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 4.4e-09 67.0 77 45.5
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 4.4e-09 67.0 77 45.5
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 7.5e-09 66.2 40 75.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 9.8e-09 65.9 48 66.7
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 1.1e-07 62.4 43 67.4
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.8e-07 61.6 80 43.8
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 3.2e-07 60.8 46 56.5
Aqoxy5G02826 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 7.0e-07 59.7 54 51.9


User provided reference genes

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