Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0055000 Rhododendron simsii HOM05D001857 ORTHO05D012719 3.6e-88 328.2 160 100.0
Rhsim04G0055100 Rhododendron simsii HOM05D001857 ORTHO05D012719 3.6e-88 328.2 160 100.0
Hma1.2p1_0328F.1_g126910 Hydrangea macrophylla HOM05D001857 ORTHO05D004244 4.8e-16 88.6 204 33.8
Cfa014404 Carpinus fangiana HOM05D001857 ORTHO05D004244 1.1e-15 87.4 123 43.9
QL08p033134 Quercus lobata HOM05D001857 ORTHO05D004244 3.4e-14 82.4 181 33.1
Nn1g03546 Nelumbo nucifera HOM05D001857 ORTHO05D004244 4.5e-14 82.0 292 27.1
MBI18_g14749_MAGBIO Magnolia biondii HOM05D001857 ORTHO05D004244 2.2e-13 79.7 177 32.2
Haze_12868 Corylus avellana HOM05D001857 ORTHO05D004244 2.9e-13 79.3 175 33.1
Cfa014406 Carpinus fangiana HOM05D000048 ORTHO05D001179 3.8e-13 79.0 312 26.0
Medtr4g048040 Medicago truncatula HOM05D001857 ORTHO05D004244 6.5e-13 78.2 162 33.3
Rhsim04G0053500 Rhododendron simsii HOM05D001857 ORTHO05D339923 8.4e-13 77.8 55 72.7
MSTRG.15984 Avicennia marina HOM05D001857 ORTHO05D004244 1.1e-12 77.4 175 33.1
TPR.G4632 Trifolium pratense HOM05D001857 ORTHO05D004244 1.1e-12 77.4 190 30.5
Cfa014403 Carpinus fangiana HOM05D001857 ORTHO05D004244 1.9e-12 76.6 172 32.6
Dinv05433 Davidia involucrata HOM05D001857 ORTHO05D004244 1.9e-12 76.6 179 32.4
Nitab4.5_0008596g0030 Nicotiana tabacum HOM05D001857 ORTHO05D004244 1.9e-12 76.6 177 30.5
Oeu051212.1 Olea europaea HOM05D001857 ORTHO05D004244 2.5e-12 76.3 177 31.6
TAR626G1789 Trochodendron aralioides HOM05D001857 ORTHO05D004244 3.2e-12 75.9 177 32.2
Lj3g0006704 Lotus japonicus HOM05D001857 ORTHO05D004244 4.2e-12 75.5 181 30.9
MBI02_g07155_MAGBIO Magnolia biondii HOM05D001857 ORTHO05D004244 4.2e-12 75.5 182 31.9
Dinv13886 Davidia involucrata HOM05D001857 ORTHO05D004244 9.3e-12 74.3 182 29.7
Nitab4.5_0008201g0030 Nicotiana tabacum HOM05D001857 ORTHO05D004244 9.3e-12 74.3 176 30.1
Lj2A269T54 Lonicera japonica HOM05D001857 ORTHO05D004244 2.7e-11 72.8 181 29.8
MD05G1345100 Malus domestica HOM05D001857 ORTHO05D004244 2.7e-11 72.8 163 32.5
GSVIVG01012736001 Vitis vinifera HOM05D001857 ORTHO05D004244 3.5e-11 72.4 178 29.2
PGSC0003DMG401016456 Solanum tuberosum HOM05D001857 ORTHO05D004244 4.6e-11 72.0 177 29.9
Actinidia30520 Actinidia chinensis HOM05D001857 ORTHO05D004244 6.1e-11 71.6 171 31.0
Solyc02g080500.3 Solanum lycopersicum HOM05D001857 ORTHO05D004244 6.1e-11 71.6 177 29.9
Sopen02g025190 Solanum pennellii HOM05D001857 ORTHO05D004244 6.1e-11 71.6 177 29.9
TAR624G0751 Trochodendron aralioides HOM05D001857 ORTHO05D004244 7.9e-11 71.2 177 31.6
Peaxi162Scf00262g00127 Petunia axillaris HOM05D001857 ORTHO05D004244 1.3e-10 70.5 177 29.4
Psat7g199440 Pisum sativum HOM05D001857 ORTHO05D004244 1.3e-10 70.5 162 30.9
Sabra11G0001100 Salix brachista HOM05D001857 ORTHO05D004244 1.3e-10 70.5 163 33.1
Aa31LG2G8930 Aethionema arabicum HOM05D001857 ORTHO05D004244 1.8e-10 70.1 198 28.3
Dinv20046 Davidia involucrata HOM05D001857 ORTHO05D004244 1.8e-10 70.1 177 28.8
COL.COLO4_31763 Corchorus olitorius HOM05D001857 ORTHO05D004244 2.3e-10 69.7 163 31.9
Thecc.06G219500 Theobroma cacao HOM05D001857 ORTHO05D004244 3.0e-10 69.3 181 30.4
Atru.chr6.3178 Acer truncatum HOM05D001857 ORTHO05D004244 5.1e-10 68.6 165 30.3
Manes.16G007800 Manihot esculenta HOM05D001857 ORTHO05D004244 5.1e-10 68.6 176 29.5
Cc09_g01760 Coffea canephora HOM05D001857 ORTHO05D004244 6.7e-10 68.2 175 29.7
Haze_06792 Corylus avellana HOM05D001857 ORTHO05D004244 6.7e-10 68.2 180 30.0
HPP92_000851 Vanilla planifolia HOM05D001857 ORTHO05D004244 6.7e-10 68.2 176 30.7
CiPaw.04G116400 Carya illinoinensis HOM05D001857 ORTHO05D004244 8.7e-10 67.8 309 26.2
CiPaw.10G070400 Carya illinoinensis HOM05D001857 ORTHO05D004244 8.7e-10 67.8 176 29.0
FvH4_6g43210 Fragaria vesca HOM05D001857 ORTHO05D004244 8.7e-10 67.8 167 29.9
FAN10G3223 Fragaria x ananassa HOM05D001857 ORTHO05D004244 8.7e-10 67.8 167 29.9
FAN14G5274 Fragaria x ananassa HOM05D001857 ORTHO05D004244 8.7e-10 67.8 167 29.9
MD09G1108600 Malus domestica HOM05D001857 ORTHO05D004244 8.7e-10 67.8 167 30.5
Sopen07g025990 Solanum pennellii HOM05D001857 ORTHO05D004244 8.7e-10 67.8 175 30.9
CSS0005663 Camellia sinensis var. sinensis HOM05D001857 ORTHO05D004244 1.5e-09 67.0 172 29.1
unitig_37.g12151 Utricularia gibba HOM05D001857 ORTHO05D004244 1.5e-09 67.0 167 30.5
RcHm_v2.0_Chr2g0159431 Rosa chinensis HOM05D001857 ORTHO05D004244 1.9e-09 66.6 167 29.3
TWI75G1513 Tripterygium wilfordii HOM05D001857 ORTHO05D004244 1.9e-09 66.6 183 30.1
CAN.G569.12 Capsicum annuum HOM05D001857 ORTHO05D004244 2.5e-09 66.2 176 29.0
Duzib235G1244 Durio zibethinus HOM05D001857 ORTHO05D004244 2.5e-09 66.2 167 31.1
Lalb_Chr18g0056311 Lupinus albus HOM05D001857 ORTHO05D004244 2.5e-09 66.2 188 29.3
CAN.G404.55 Capsicum annuum HOM05D001857 ORTHO05D004244 3.3e-09 65.9 181 28.2
FAN02G0746 Fragaria x ananassa HOM05D001857 ORTHO05D004244 3.3e-09 65.9 172 29.1
Sabra04G0008300 Salix brachista HOM05D001857 ORTHO05D004244 3.3e-09 65.9 163 31.9
PGSC0003DMG401005053 Solanum tuberosum HOM05D001857 ORTHO05D004244 3.3e-09 65.9 172 28.5
ATR0752G214 Amborella trichopoda HOM05D001857 ORTHO05D004244 4.3e-09 65.5 163 32.5
Aqoxy7G02443 Aquilegia oxysepala HOM05D001857 ORTHO05D004244 4.3e-09 65.5 180 28.3
CARHR050410 Cardamine hirsuta HOM05D001857 ORTHO05D004244 4.3e-09 65.5 167 28.7
DCAR_004214 Daucus carota HOM05D001857 ORTHO05D004244 4.3e-09 65.5 163 31.3
Eucgr.D01317 Eucalyptus grandis HOM05D001857 ORTHO05D004244 4.3e-09 65.5 173 29.5
Zm00001eb298090 Zea mays HOM05D001857 ORTHO05D004244 4.3e-09 65.5 163 28.8
Eucgr.A01709 Eucalyptus grandis HOM05D001857 ORTHO05D004244 7.4e-09 64.7 177 27.7
CiPaw.09G090900 Carya illinoinensis HOM05D001857 ORTHO05D004244 9.7e-09 64.3 173 29.5
ECA234G4482 Erigeron canadensis HOM05D001857 ORTHO05D004244 9.7e-09 64.3 169 29.6
Glyma.12G099200 Glycine max HOM05D001857 ORTHO05D004244 9.7e-09 64.3 168 31.5
Medtr2g022990 Medicago truncatula HOM05D001857 ORTHO05D004244 9.7e-09 64.3 210 28.6
Sp2g02640 Schrenkiella parvula HOM05D001857 ORTHO05D004244 9.7e-09 64.3 167 28.7
BcaC04g22361 Brassica carinata HOM05D001857 ORTHO05D004244 1.3e-08 63.9 167 28.1
C09p20180 Brassica napus HOM05D001857 ORTHO05D004244 1.3e-08 63.9 167 28.1
BolC9t54923H Brassica oleracea HOM05D001857 ORTHO05D004244 1.3e-08 63.9 167 28.1
Phvul.011G104100 Phaseolus vulgaris HOM05D001857 ORTHO05D004244 1.3e-08 63.9 182 27.5
SGA_v2.0_scaffold7G03850 Striga asiatica HOM05D001857 ORTHO05D004244 1.3e-08 63.9 167 30.5
AL2G14150 Arabidopsis lyrata HOM05D001857 ORTHO05D004244 1.6e-08 63.5 167 28.1
BcaB07g31294 Brassica carinata HOM05D001857 ORTHO05D004244 1.6e-08 63.5 198 26.8
Carub.0002s0314 Capsella rubella HOM05D001857 ORTHO05D004244 1.6e-08 63.5 172 27.3
Migut.M01313 Erythranthe guttata HOM05D001857 ORTHO05D004244 1.6e-08 63.5 181 27.6
Gohir.A10G013100 Gossypium hirsutum HOM05D001857 ORTHO05D004244 1.6e-08 63.5 177 29.4
HanXRQChr16g0516161 Helianthus annuus HOM05D001857 ORTHO05D004244 1.6e-08 63.5 179 28.5
arahy.Tifrunner.gnm1.ann1.KD19HR Arachis hypogaea HOM05D001857 ORTHO05D004244 2.2e-08 63.2 168 31.0
FAN09G4809 Fragaria x ananassa HOM05D001857 ORTHO05D004244 2.2e-08 63.2 172 28.5
Gohir.A06G148100 Gossypium hirsutum HOM05D001857 ORTHO05D004244 2.2e-08 63.2 167 29.9
Gohir.D06G154000 Gossypium hirsutum HOM05D001857 ORTHO05D004244 2.2e-08 63.2 167 29.9
Gorai.010G180100 Gossypium raimondii HOM05D001857 ORTHO05D004244 2.2e-08 63.2 167 29.9
Lsat_1_v5_gn_4_60640 Lactuca sativa HOM05D001857 ORTHO05D004244 2.2e-08 63.2 169 27.8
Potri.004G016000 Populus trichocarpa HOM05D001857 ORTHO05D004244 2.2e-08 63.2 170 31.2
Thhalv10023466m.g Eutrema salsugineum HOM05D001857 ORTHO05D004244 2.8e-08 62.8 167 28.7
Gohir.D10G013000 Gossypium hirsutum HOM05D001857 ORTHO05D004244 2.8e-08 62.8 163 30.7
Gorai.011G014700 Gossypium raimondii HOM05D001857 ORTHO05D004244 2.8e-08 62.8 163 30.7
PGSC0003DMG400028952 Solanum tuberosum HOM05D001857 ORTHO05D004244 2.8e-08 62.8 175 30.3
arahy.Tifrunner.gnm1.ann1.E1NLAK Arachis hypogaea HOM05D001857 ORTHO05D004244 3.7e-08 62.4 166 30.1
A09p16610 Brassica napus HOM05D001857 ORTHO05D004244 3.7e-08 62.4 167 27.5
BraA09t37297Z Brassica rapa HOM05D001857 ORTHO05D004244 3.7e-08 62.4 167 27.5
CANSAT56G0962 Cannabis sativa HOM05D001857 ORTHO05D004244 3.7e-08 62.4 167 29.9
Ca_00618_v3 Cicer arietinum L. HOM05D001857 ORTHO05D004244 3.7e-08 62.4 180 28.9
VMungo1127G0183 Vigna mungo HOM05D001857 ORTHO05D004244 4.8e-08 62.0 181 27.1
Ciclev10015200m.g Citrus clementina HOM05D001857 ORTHO05D004244 8.2e-08 61.2 169 30.8
Duzib192G0723 Durio zibethinus HOM05D001857 ORTHO05D004244 8.2e-08 61.2 67 52.2
HanXRQChr03g0090851 Helianthus annuus HOM05D001857 ORTHO05D004244 8.2e-08 61.2 174 26.4
Hma1.2p1_0091F.1_g046390 Hydrangea macrophylla HOM05D001857 ORTHO05D004244 8.2e-08 61.2 165 29.1
PGR042G1645 Punica granatum HOM05D001857 ORTHO05D004244 8.2e-08 61.2 177 28.2
CiPaw.03G160300 Carya illinoinensis HOM05D001857 ORTHO05D004244 1.1e-07 60.8 64 50.0
HanXRQChr17g0557431 Helianthus annuus HOM05D001857 ORTHO05D004244 1.1e-07 60.8 169 28.4
Lj1C764T13 Lonicera japonica HOM05D001857 ORTHO05D004244 1.1e-07 60.8 157 30.6
MD10G1320400 Malus domestica HOM05D001857 ORTHO05D004244 1.1e-07 60.8 190 26.8
Prupe.4G021700 Prunus persica HOM05D001857 ORTHO05D004244 1.1e-07 60.8 190 27.9
TWI63G1240 Tripterygium wilfordii HOM05D001857 ORTHO05D004244 1.1e-07 60.8 170 29.4
AT1G61900 Arabidopsis thaliana HOM05D001857 ORTHO05D004244 1.4e-07 60.5 167 27.5
Prupe.3G217500 Prunus persica HOM05D001857 ORTHO05D004244 1.4e-07 60.5 167 29.3
QL06p012152 Quercus lobata HOM05D001857 ORTHO05D004244 1.4e-07 60.5 57 50.9
DCAR_019276 Daucus carota HOM05D001857 ORTHO05D004244 3.1e-07 59.3 187 27.3
Nn5g29369 Nelumbo nucifera HOM05D001857 ORTHO05D004244 3.1e-07 59.3 165 28.5
Os07g0102300 Oryza sativa ssp. japonica HOM05D001857 ORTHO05D004244 3.1e-07 59.3 57 47.4
arahy.Tifrunner.gnm1.ann1.G6ALAZ Arachis hypogaea HOM05D001857 ORTHO05D004244 4.1e-07 58.9 164 29.9
Ciclev10015544m.g Citrus clementina HOM05D001857 ORTHO05D004244 4.1e-07 58.9 180 26.1
Lalb_Chr19g0135831 Lupinus albus HOM05D001857 ORTHO05D004244 5.3e-07 58.5 57 49.1
arahy.Tifrunner.gnm1.ann1.L156KV Arachis hypogaea HOM05D001857 ORTHO05D004244 6.9e-07 58.2 164 29.9
COL.COLO4_06330 Corchorus olitorius HOM05D001857 ORTHO05D004244 9.0e-07 57.8 62 45.2
HanXRQChr12g0384551 Helianthus annuus HOM05D001857 ORTHO05D004244 9.0e-07 57.8 57 47.4
Lj6g0017819 Lotus japonicus HOM05D001857 ORTHO05D004244 9.0e-07 57.8 201 24.9
QL05p073396 Quercus lobata HOM05D001857 ORTHO05D004244 9.0e-07 57.8 176 25.6
RcHm_v2.0_Chr5g0003311 Rosa chinensis HOM05D001857 ORTHO05D004244 9.0e-07 57.8 190 27.4
BolC1t03866H Brassica oleracea HOM05D001857 ORTHO05D004244 1.2e-06 57.4 168 28.0
BraA01t03210Z Brassica rapa HOM05D001857 ORTHO05D004244 1.5e-06 57.0 84 42.9
Psat1g181200 Pisum sativum HOM05D001857 ORTHO05D004244 1.5e-06 57.0 202 27.2
Rhsim13G0154500 Rhododendron simsii HOM05D001857 ORTHO05D004244 1.5e-06 57.0 61 45.9
Solyc07g052360.2 Solanum lycopersicum HOM05D001857 ORTHO05D004244 1.5e-06 57.0 57 49.1
TPR.G9949 Trifolium pratense HOM05D001857 ORTHO05D004244 1.5e-06 57.0 172 28.5
Nitab4.5_0004417g0040 Nicotiana tabacum HOM05D001857 ORTHO05D004244 2.0e-06 56.6 175 28.0
TWI38G2310 Tripterygium wilfordii HOM05D001857 ORTHO05D004244 2.0e-06 56.6 171 29.2
PSO832G3148 Papaver somniferum HOM05D001857 ORTHO05D004244 2.6e-06 56.2 177 26.6
Peaxi162Scf00007g00923 Petunia axillaris HOM05D001857 ORTHO05D004244 3.4e-06 55.8 44 61.4
Hund23472 Selenicereus undatus HOM05D001857 ORTHO05D004244 3.4e-06 55.8 161 29.8
Solyc03g031680.3 Solanum lycopersicum HOM05D001857 ORTHO05D004244 3.4e-06 55.8 61 44.3
Sopen03g005550 Solanum pennellii HOM05D001857 ORTHO05D004244 3.4e-06 55.8 61 44.3
Atru.chr10.2212 Acer truncatum HOM05D001857 ORTHO05D004244 4.5e-06 55.5 39 74.4
FvH4_3g02240 Fragaria vesca HOM05D001857 ORTHO05D004244 4.5e-06 55.5 190 26.8
SalBow8G4589 Salvia bowleyana HOM05D001857 ORTHO05D004244 4.5e-06 55.5 61 44.3
C01p39150 Brassica napus HOM05D001857 ORTHO05D004244 5.9e-06 55.1 83 42.2
CSS0000716 Camellia sinensis var. sinensis HOM05D001857 ORTHO05D004244 5.9e-06 55.1 42 59.5
PGR004G2000 Punica granatum HOM05D001857 ORTHO05D004244 5.9e-06 55.1 171 28.7
Sed0021959 Sechium edule HOM05D001857 ORTHO05D004244 5.9e-06 55.1 167 25.7
THA.LOC104818814 Tarenaya hassleriana HOM05D001857 ORTHO05D004244 5.9e-06 55.1 103 38.8
Actinidia26919 Actinidia chinensis HOM05D001857 ORTHO05D004244 7.7e-06 54.7 125 34.4
BcaB04g20382 Brassica carinata HOM05D001857 ORTHO05D004244 7.7e-06 54.7 83 42.2
Cpa.g.sc152.5 Carica papaya HOM05D001857 ORTHO05D004244 7.7e-06 54.7 57 47.4
Lj1A764T62 Lonicera japonica HOM05D001857 ORTHO05D012719 7.7e-06 54.7 39 66.7
PSO210G7317 Papaver somniferum HOM05D001857 ORTHO05D004244 7.7e-06 54.7 57 47.4
QL06p012145 Quercus lobata HOM05D001857 ORTHO05D012719 7.7e-06 54.7 49 59.2
CANSAT64G1055 Cannabis sativa HOM05D001857 ORTHO05D004244 1.0e-05 54.3 57 49.1
Nitab4.5_0002137g0110 Nicotiana tabacum HOM05D001857 ORTHO05D004244 1.0e-05 54.3 175 27.4
Potri.011G003000 Populus trichocarpa HOM05D001857 ORTHO05D004244 1.0e-05 54.3 125 35.2


User provided reference genes

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