Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 0.0e+00 1288.5 684 100.0
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 0.0e+00 1164.1 695 86.5
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.5e-281 972.6 673 74.3
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 2.0e-281 972.2 684 72.8
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 5.2e-269 931.0 687 70.6
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 2.6e-268 928.7 687 70.0
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 3.6e-262 908.3 680 70.1
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 2.6e-260 902.1 684 68.6
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.6e-254 882.9 674 67.1
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 5.2e-253 877.9 675 68.0
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 1.3e-248 863.2 676 66.4
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 6.1e-246 854.4 675 66.7
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 6.1e-246 854.4 677 65.1
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.9e-243 845.5 682 65.8
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 4.9e-243 844.7 678 65.9
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 8.3e-243 844.0 679 66.4
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 8.3e-243 844.0 678 65.9
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.4e-242 842.4 674 64.8
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 3.2e-242 842.0 672 65.2
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 7.0e-242 840.9 685 65.8
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.1e-239 833.6 683 65.2
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 2.5e-239 832.4 672 64.6
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 5.6e-239 831.2 680 65.0
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 2.8e-238 828.9 675 65.2
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 4.7e-238 828.2 672 63.8
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.8e-237 826.2 682 65.0
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 2.3e-237 825.9 594 70.2
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 4.4e-236 821.6 683 63.8
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.8e-236 821.2 683 64.4
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 2.9e-235 818.9 679 65.2
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 3.7e-235 818.5 685 63.8
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 6.4e-235 817.8 692 64.0
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 6.4e-235 817.8 675 64.7
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 6.0e-233 811.2 685 63.5
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.7e-232 809.7 685 63.2
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 3.0e-232 808.9 672 63.2
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 6.6e-232 807.7 681 63.0
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 1.9e-231 806.2 683 65.2
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 7.3e-231 804.3 684 64.0
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 1.6e-230 803.1 675 65.2
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 4.0e-229 798.5 673 63.0
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 1.5e-228 796.6 680 62.9
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 2.0e-228 796.2 676 61.4
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 3.4e-228 795.4 690 61.6
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.3e-227 793.5 677 61.0
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 1.3e-227 793.5 675 61.8
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.2e-227 792.7 682 62.9
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 2.9e-227 792.3 675 61.8
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 1.9e-226 789.6 613 66.1
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 8.6e-224 780.8 674 63.6
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 1.1e-223 780.4 685 61.3
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.5e-223 779.2 684 61.0
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 3.3e-223 778.9 657 62.3
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 7.3e-223 777.7 686 60.9
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.1e-222 776.2 686 60.9
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 2.1e-222 776.2 685 60.7
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 2.1e-222 776.2 671 61.5
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 4.7e-222 775.0 687 60.1
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 3.1e-221 772.3 679 60.4
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.5e-220 770.0 711 60.2
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 3.4e-220 768.8 684 59.5
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 2.2e-219 766.1 686 60.3
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 4.9e-219 765.0 691 59.6
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.4e-218 763.5 682 59.2
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 9.3e-218 760.8 683 59.0
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.2e-217 760.4 693 59.3
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 2.1e-217 759.6 682 58.9
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 7.8e-217 757.7 690 58.7
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 1.0e-216 757.3 687 60.0
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 5.1e-216 755.0 676 59.2
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 6.6e-216 754.6 682 60.1
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 6.6e-216 754.6 680 59.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 1.9e-215 753.1 687 59.8
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 3.3e-215 752.3 686 59.3
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 9.6e-215 750.7 687 59.7
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 6.2e-214 748.0 686 59.3
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 6.2e-214 748.0 692 59.1
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.1e-213 747.3 677 62.2
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 2.4e-213 746.1 677 60.7
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.4e-213 746.1 684 58.9
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 4.0e-213 745.3 503 74.2
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 9.0e-213 744.2 687 59.5
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.5e-212 743.4 685 60.0
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-211 740.3 685 58.8
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.7e-211 740.0 688 58.6
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 2.9e-211 739.2 699 60.2
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 2.4e-210 736.1 679 58.5
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 2.7e-209 732.6 690 58.0
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 1.3e-208 730.3 700 57.6
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 2.3e-208 729.6 684 59.1
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 1.1e-207 727.2 687 58.1
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 9.6e-207 724.2 691 56.9
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.6e-206 723.4 686 57.6
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 2.9e-203 712.6 681 55.5
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 3.8e-203 712.2 684 55.7
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 6.4e-203 711.4 681 59.3
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 8.4e-203 711.1 681 56.4
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 8.4e-203 711.1 677 56.1
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.1e-202 710.7 686 56.7
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 3.9e-200 702.2 694 56.2
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 4.3e-199 698.7 712 54.4
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 8.1e-198 694.5 680 55.9
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.0e-196 689.9 714 53.8
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.6e-196 689.5 679 55.4
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 1.3e-195 687.2 697 54.9
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 6.5e-195 684.9 679 56.0
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.6e-193 680.2 711 54.1
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 4.6e-193 678.7 679 55.7
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 5.5e-186 655.2 674 54.0
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 5.1e-184 648.7 613 58.1
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.1e-183 647.5 717 51.5
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 2.5e-183 646.4 740 50.5
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.4e-181 640.6 695 52.1
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 4.5e-180 635.6 693 53.8
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 7.7e-180 634.8 679 50.8
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 2.1e-177 626.7 665 52.6
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 2.7e-177 626.3 651 53.1
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 4.3e-175 619.0 529 63.5
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.8e-174 616.3 659 52.2
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 3.1e-173 612.8 645 52.4
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 7.0e-165 585.1 648 54.3
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 2.2e-163 580.1 685 49.1
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 1.5e-162 577.4 521 61.4
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.2e-162 576.2 659 50.1
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 7.2e-162 575.1 693 47.9
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 9.1e-157 558.1 695 47.2
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 3.5e-156 556.2 522 57.7
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.0e-155 552.4 598 51.7
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.1e-149 534.6 538 55.9
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 4.2e-146 522.7 563 54.7
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 4.0e-144 516.2 455 67.0
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 2.6e-143 513.5 679 46.8
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 6.3e-142 508.8 680 45.1
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 1.6e-137 494.2 506 55.9
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 3.0e-136 490.0 448 60.7
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 2.8e-129 466.8 475 57.7
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 2.7e-124 450.3 666 44.3
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.1e-120 436.8 598 44.1
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 9.2e-117 425.2 496 50.2
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 7.8e-116 422.2 640 43.1
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 3.0e-115 420.2 607 43.7
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 1.9e-109 401.0 705 39.0
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 1.9e-106 391.0 385 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 4.7e-105 386.3 723 36.8
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 6.9e-104 382.5 292 62.7
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.1e-100 370.9 319 63.0
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.1e-96 358.6 571 41.2
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 1.5e-95 354.8 411 46.7
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 2.0e-95 354.4 276 71.4
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.5e-90 338.2 798 32.8
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.6e-89 333.6 295 61.0
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 9.9e-87 325.5 637 36.4
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.6e-76 291.6 421 42.8
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.5e-76 290.4 322 48.1
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.3e-72 276.6 217 64.5
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 9.0e-72 275.8 317 45.4
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 3.2e-69 267.3 272 58.5
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 5.7e-66 256.5 642 33.3
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 1.0e-62 245.7 625 32.2
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 4.4e-42 177.2 235 48.9
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 7.5e-42 176.4 724 26.8
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 9.1e-40 169.5 249 42.6
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 3.8e-38 164.1 148 54.7
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 3.2e-29 134.4 128 55.5
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 2.6e-26 124.8 162 44.4
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.6e-23 115.5 84 69.0
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 2.9e-22 111.3 105 58.1
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 4.3e-21 107.5 86 61.6
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 9.5e-21 106.3 111 55.0
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 1.0e-19 102.8 61 83.6
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 3.0e-19 101.3 102 51.0
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 6.8e-19 100.1 64 70.3
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 2.6e-18 98.2 68 66.2
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 2.2e-17 95.1 106 52.8
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 2.7e-15 88.2 85 58.8
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.8e-15 86.7 51 86.3
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 7.8e-15 86.7 81 55.6
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 3.6e-12 77.8 50 66.0
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 3.6e-12 77.8 53 60.4
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-12 77.4 54 70.4
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 8.0e-12 76.6 59 57.6
Dinv01749 Davidia involucrata HOM05D003691 ORTHO05D004288 1.1e-11 76.3 52 67.3
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 2.0e-10 72.0 48 66.7
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 1.1e-08 66.2 94 50.0
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 3.2e-08 64.7 46 65.2
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 9.2e-08 63.2 80 53.8
Cre13.g589300 Chlamydomonas reinhardtii HOM05D003691 ORTHO05D004288 2.0e-07 62.0 206 24.3


User provided reference genes

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