Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.6e-52 209.1 103 100.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 4.7e-33 144.4 107 70.1
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 9.9e-31 136.7 107 69.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.7e-30 136.0 107 67.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.2e-29 131.7 107 68.2
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.6e-28 129.4 104 61.5
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.1e-28 129.0 109 64.2
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.7e-28 128.6 109 60.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.6e-28 127.9 106 64.2
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.6e-28 127.9 105 60.0
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 7.8e-28 127.1 111 64.0
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.6e-27 124.0 105 54.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.9e-26 122.5 107 60.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.5e-26 122.1 105 60.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.7e-25 117.9 109 62.4
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.7e-25 117.9 109 62.4
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.7e-25 117.9 109 62.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.7e-25 117.9 104 56.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.2e-25 117.5 105 56.2
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.4e-24 115.5 107 62.6
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 3.1e-24 115.2 106 58.5
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.2e-24 114.4 108 57.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-23 113.2 107 61.7
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-23 113.2 107 61.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.4e-23 111.7 105 56.2
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 4.4e-23 111.3 103 58.3
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.4e-23 111.3 108 54.6
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.6e-23 110.5 119 55.5
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.7e-22 109.4 105 53.3
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 2.9e-22 108.6 97 61.9
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.8e-22 108.2 108 53.7
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.8e-22 108.2 93 57.0
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 3.8e-22 108.2 115 59.1
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.8e-22 108.2 105 55.2
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 6.4e-22 107.5 108 54.6
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.4e-22 107.1 110 59.1
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 8.4e-22 107.1 107 57.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.4e-21 106.3 108 56.5
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.9e-21 105.9 103 56.3
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.9e-21 105.9 108 52.8
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.9e-21 105.9 105 52.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.4e-21 105.5 104 55.8
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.4e-21 105.5 110 55.5
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.4e-21 105.5 105 52.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.2e-21 105.1 103 56.3
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.2e-21 104.8 106 52.8
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.1e-21 104.0 106 53.8
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 7.1e-21 104.0 106 53.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.2e-20 103.2 107 53.3
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.2e-20 103.2 95 53.7
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.6e-20 102.8 107 54.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.6e-20 102.8 106 55.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.6e-20 102.8 96 54.2
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.1e-20 102.4 78 66.7
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.5e-20 101.7 96 58.3
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.5e-20 101.7 93 54.8
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 4.6e-20 101.3 103 51.5
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.6e-20 101.3 109 56.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-19 99.8 107 51.4
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.3e-19 99.8 120 53.3
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-19 99.8 110 56.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.3e-19 99.8 110 56.4
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.3e-19 99.8 92 55.4
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.7e-19 99.4 110 51.8
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.7e-19 99.4 110 51.8
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.7e-19 99.4 109 51.4
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.7e-19 99.4 91 54.9
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.0e-19 98.6 101 52.5
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 5.1e-19 97.8 106 55.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.6e-19 97.4 107 55.1
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 6.6e-19 97.4 108 51.9
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.5e-18 96.3 107 54.2
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.3e-18 95.1 105 51.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.6e-18 94.4 107 51.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 5.6e-18 94.4 109 46.8
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 7.3e-18 94.0 99 57.6
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 9.6e-18 93.6 104 52.9
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.3e-17 93.2 108 50.9
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.1e-17 92.4 106 48.1
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.8e-17 92.0 108 47.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.8e-17 92.0 120 50.8
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.8e-17 91.3 106 52.8
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 6.2e-17 90.9 107 47.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 6.2e-17 90.9 109 48.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 8.1e-17 90.5 95 51.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.1e-16 90.1 97 53.6
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.8e-16 89.4 93 45.2
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.1e-16 88.6 93 48.4
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 6.9e-16 87.4 93 45.2
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 5.8e-15 84.3 97 51.5
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.9e-15 83.6 112 43.8
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.3e-14 83.2 112 43.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 2.9e-14 82.0 112 45.5
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.9e-14 81.3 96 44.8
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 6.4e-14 80.9 86 43.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-13 80.1 101 48.5
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 80 48.8
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.9e-13 79.3 106 43.4
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.2e-13 78.6 93 45.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.2e-13 78.2 111 46.8
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 4.2e-13 78.2 89 52.8
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 5.4e-13 77.8 102 47.1
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 7.1e-13 77.4 98 46.9
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 9.3e-13 77.0 97 47.4
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.6e-12 76.3 110 41.8
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 2.1e-12 75.9 92 44.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-12 75.5 106 40.6
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.5e-12 75.1 105 41.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.5e-12 75.1 105 41.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.5e-12 75.1 105 40.0
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 4.6e-12 74.7 104 38.5
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-11 73.6 105 40.0
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.0e-11 73.6 96 53.1
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.3e-11 73.2 109 38.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.3e-11 73.2 106 42.5
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.3e-11 73.2 105 40.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.7e-11 72.8 105 41.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.7e-11 72.8 94 42.6
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.3e-11 72.4 105 40.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 5.1e-11 71.2 114 37.7
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 5.1e-11 71.2 98 40.8
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-10 70.1 105 39.0
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.1e-10 70.1 111 38.7
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-10 69.7 105 43.8
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.5e-10 69.7 105 43.8
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 1.9e-10 69.3 61 62.3
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.5e-10 68.9 105 41.9
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 2.5e-10 68.9 105 41.9
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 2.5e-10 68.9 105 41.9
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.5e-10 68.9 96 40.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 4.3e-10 68.2 102 44.1
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 4.3e-10 68.2 67 47.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.3e-10 68.2 105 39.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 9.6e-10 67.0 111 38.7
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.1e-09 65.9 98 40.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.1e-09 65.9 112 39.3
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.6e-09 65.1 106 37.7
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.8e-09 64.7 109 39.4
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-08 63.5 99 39.4
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.4e-08 62.4 99 39.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 3.1e-08 62.0 94 39.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.4e-07 58.5 105 35.2
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 5.8e-07 57.8 117 39.3
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.9e-06 55.5 104 38.5
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.8e-06 55.1 93 37.6


User provided reference genes

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