Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 3.6e-116 422.5 414 100.0
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 2.3e-94 350.1 487 80.1
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 1.1e-85 321.2 414 58.2
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 1.1e-80 304.7 414 58.9
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 7.1e-80 302.0 413 82.6
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 3.2e-72 276.6 414 71.7
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 2.1e-71 273.9 414 76.3
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 2.3e-70 270.4 415 74.0
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 5.1e-70 269.2 414 76.3
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 7.4e-69 265.4 409 77.0
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 9.6e-69 265.0 415 75.9
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.4e-67 261.2 415 71.3
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 6.9e-67 258.8 413 75.5
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 5.9e-66 255.8 408 72.5
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 1.7e-65 254.2 418 70.6
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.2e-65 253.8 414 74.2
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 8.5e-65 251.9 409 75.6
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 1.1e-64 251.5 408 63.0
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 1.9e-64 250.8 418 50.7
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 7.2e-64 248.8 413 71.2
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.2e-63 248.1 408 70.3
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 1.6e-63 247.7 408 70.3
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 1.0e-62 245.0 407 46.2
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 1.8e-62 244.2 409 42.3
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 2.3e-62 243.8 408 69.9
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 3.9e-62 243.0 407 76.7
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 5.1e-62 242.7 405 72.3
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.1e-62 242.7 405 72.3
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.1e-62 242.7 405 72.3
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.9e-61 240.7 416 62.3
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 7.4e-61 238.8 414 74.2
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.6e-60 237.7 418 59.3
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.2e-60 237.3 351 78.1
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.8e-60 236.9 405 71.4
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 3.7e-60 236.5 417 65.0
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 3.7e-60 236.5 408 76.0
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 3.7e-60 236.5 405 71.4
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 4.8e-60 236.1 417 64.3
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 6.3e-60 235.7 410 67.1
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 6.3e-60 235.7 414 68.1
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 8.2e-60 235.3 415 66.3
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 8.2e-60 235.3 354 52.0
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 1.1e-59 235.0 407 68.6
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.4e-59 234.6 418 69.1
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 6.9e-59 232.3 415 68.4
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.9e-59 232.3 408 75.5
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 6.9e-59 232.3 418 70.3
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 1.2e-58 231.5 413 69.2
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 5.9e-58 229.2 409 62.3
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.2e-57 227.3 410 63.2
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.8e-57 226.5 416 66.1
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 3.8e-57 226.5 416 66.1
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 2.5e-56 223.8 416 63.9
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 3.2e-56 223.4 416 61.1
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 3.2e-56 223.4 402 49.5
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 3.2e-56 223.4 409 41.1
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 4.2e-56 223.0 405 48.1
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 4.2e-56 223.0 409 55.3
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.5e-56 222.6 439 59.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 7.2e-56 222.2 427 56.4
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 7.2e-56 222.2 412 58.7
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 9.4e-56 221.9 411 39.7
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.2e-55 221.5 404 64.1
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.7e-55 220.3 351 82.9
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 3.6e-55 219.9 426 47.9
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 3.6e-55 219.9 406 65.0
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 6.1e-55 219.2 417 61.9
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 7.9e-55 218.8 452 61.9
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.4e-54 218.0 441 42.9
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 2.3e-54 217.2 408 64.2
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 2.3e-54 217.2 406 63.8
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.3e-54 217.2 412 65.3
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 2.3e-54 217.2 400 42.0
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 3.0e-54 216.9 348 80.5
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 3.0e-54 216.9 409 50.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 3.9e-54 216.5 411 40.4
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 5.1e-54 216.1 407 73.7
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 1.1e-53 214.9 414 66.4
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 1.5e-53 214.5 440 55.5
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.0e-53 214.2 416 72.1
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.2e-52 210.7 410 39.5
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 2.2e-52 210.7 383 70.8
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 3.7e-52 209.9 409 67.0
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.8e-52 209.5 410 39.3
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 4.8e-52 209.5 411 65.0
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 8.2e-52 208.8 419 39.4
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 1.1e-51 208.4 345 80.6
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.4e-51 208.0 350 49.1
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 1.8e-51 207.6 409 62.3
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 4.1e-51 206.5 418 72.7
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 9.1e-51 205.3 410 43.4
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.2e-50 204.9 408 73.3
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 1.2e-50 204.9 421 65.3
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.2e-50 204.9 412 65.3
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 2.6e-50 203.8 421 65.1
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 4.5e-50 203.0 408 71.8
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 7.7e-50 202.2 409 43.3
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 7.7e-50 202.2 409 43.0
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 7.7e-50 202.2 332 74.4
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 1.7e-49 201.1 417 58.3
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 2.2e-49 200.7 407 63.6
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 2.9e-49 200.3 419 63.5
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 4.2e-48 196.4 428 61.7
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.4e-46 191.4 335 48.1
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.8e-46 191.0 391 33.5
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 3.0e-46 190.3 413 52.8
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 8.8e-46 188.7 349 66.2
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 7.4e-45 185.7 414 59.4
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 9.7e-45 185.3 413 49.4
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 8.2e-44 182.2 414 44.7
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 8.2e-44 182.2 343 34.7
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.4e-43 180.6 420 41.0
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 3.1e-43 180.3 405 64.0
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 4.1e-43 179.9 413 55.9
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 4.1e-43 179.9 414 36.2
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 1.2e-42 178.3 418 63.6
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 1.7e-41 174.5 413 61.0
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 2.2e-41 174.1 418 36.6
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.5e-40 171.4 411 30.9
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 3.2e-40 170.2 416 38.0
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 5.5e-40 169.5 129 65.9
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.6e-39 167.9 380 35.0
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.8e-38 164.5 301 75.7
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.0e-38 163.7 331 55.3
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 4.0e-38 163.3 306 75.8
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.2e-37 161.8 351 68.1
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.3e-37 160.2 625 44.5
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 4.4e-37 159.8 500 55.2
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 5.7e-37 159.5 426 32.6
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.1e-35 153.3 122 59.0
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 7.0e-35 152.5 128 56.2
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 7.0e-35 152.5 406 59.4
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.0e-34 151.0 128 54.7
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 3.5e-34 150.2 119 61.3
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.2e-33 147.5 337 40.7
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.5e-32 144.8 410 28.0
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 1.5e-32 144.8 406 58.4
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 2.7e-31 140.6 124 55.6
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.2e-29 135.2 337 35.3
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.2e-29 135.2 427 39.1
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 4.4e-29 133.3 128 51.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 9.8e-29 132.1 413 57.6
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.2e-28 131.0 124 54.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.8e-28 130.6 401 32.4
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 1.1e-27 128.6 130 50.0
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 5.4e-27 126.3 307 33.9
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 7.0e-27 125.9 347 28.0
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.2e-26 125.2 175 40.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 1.9e-24 117.9 124 48.4
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.1e-23 114.4 137 48.2
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.2e-21 108.6 406 39.2
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.6e-21 107.5 350 26.0
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 7.5e-21 105.9 60 80.0
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 1.3e-20 105.1 120 45.0
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.7e-20 103.6 405 24.2
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 6.6e-17 92.8 115 40.9
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 4.3e-16 90.1 55 72.7
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.2e-15 88.6 343 23.6
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 1.0e-14 85.5 112 41.1
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.3e-14 84.3 417 27.1
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 5.2e-14 83.2 110 40.0
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 1.5e-13 81.6 52 69.2
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 5.7e-13 79.7 52 67.3
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 5.7e-13 79.7 61 60.7
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 5.7e-13 79.7 105 41.9
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 5.7e-13 79.7 52 69.2
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 1.1e-11 75.5 120 50.0
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 1.8e-11 74.7 42 71.4
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.3e-09 68.6 124 29.8
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 3.3e-08 63.9 31 80.6


User provided reference genes

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