Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.8e-284 979.9 481 100.0
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 7.1e-281 969.9 481 98.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 7.4e-246 853.6 480 87.5
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.6e-203 713.0 479 74.3
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 5.5e-201 704.5 479 73.5
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.2e-198 696.8 481 73.0
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.6e-198 695.7 482 73.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.3e-194 683.3 481 70.1
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 3.3e-193 678.7 479 71.0
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.0e-190 669.5 482 69.1
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.8e-189 665.6 480 69.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.9e-189 664.8 479 71.2
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.4e-188 662.5 482 68.0
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 7.0e-188 661.0 481 67.6
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 9.2e-188 660.6 481 68.6
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.6e-187 659.8 505 67.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 2.3e-186 656.0 489 68.9
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 5.0e-186 654.8 481 68.0
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 3.3e-185 652.1 481 67.2
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.3e-185 652.1 484 66.5
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.6e-184 648.7 485 67.0
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.4e-183 646.7 482 67.6
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 3.1e-183 645.6 485 66.8
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.2e-182 643.7 480 67.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.4e-182 642.1 479 66.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.8e-182 640.6 483 66.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 9.8e-182 640.6 479 66.2
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.7e-181 638.6 480 67.3
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.4e-181 637.9 479 66.6
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.4e-180 636.7 484 68.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.4e-180 636.7 481 66.5
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.1e-180 635.2 480 67.1
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 4.1e-180 635.2 485 64.9
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.4e-180 634.8 485 66.2
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.2e-179 633.6 486 66.9
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.8e-179 630.9 483 67.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.8e-179 630.9 479 66.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.0e-178 630.6 486 66.7
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.0e-178 630.6 479 64.5
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.3e-178 630.2 443 70.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.7e-178 629.8 484 66.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.7e-178 629.8 483 67.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.3e-178 629.4 480 66.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.0e-178 629.0 485 65.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 6.6e-178 627.9 485 64.9
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 8.6e-178 627.5 482 64.9
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 8.6e-178 627.5 481 64.2
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.1e-177 627.1 486 64.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.5e-177 626.7 486 66.3
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.9e-177 626.3 486 65.4
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 4.3e-177 625.2 478 65.1
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.1e-176 622.9 524 61.1
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 2.1e-176 622.9 485 65.4
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.6e-176 622.1 486 64.8
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.0e-175 618.6 531 61.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 6.8e-175 617.8 522 60.9
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.0e-174 616.3 546 59.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.6e-174 615.9 481 63.8
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 5.8e-174 614.8 486 64.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 7.5e-174 614.4 505 63.8
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.2e-173 612.8 493 62.1
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 2.9e-173 612.5 488 65.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-173 612.5 481 65.7
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 3.7e-173 612.1 522 60.2
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.1e-172 610.5 522 60.0
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.4e-172 610.1 550 57.5
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.4e-172 610.1 523 61.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.4e-172 609.4 503 64.6
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.4e-172 609.4 522 61.3
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 5.4e-172 608.2 485 63.1
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.5e-171 605.5 480 64.0
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.5e-171 605.5 522 61.9
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.8e-171 604.4 487 64.5
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.1e-170 601.7 520 61.9
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 6.6e-170 601.3 482 62.7
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 8.9e-167 590.9 480 62.9
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-165 587.0 484 60.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.7e-165 586.6 477 61.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.7e-165 585.5 482 61.6
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.1e-164 582.0 483 61.1
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.1e-163 579.7 446 65.7
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.0e-163 578.2 444 66.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.3e-162 577.0 487 61.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.1e-162 575.1 488 62.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 6.6e-162 574.7 477 60.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 6.6e-162 574.7 480 62.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 7.3e-161 571.2 397 72.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.2e-160 570.5 485 60.4
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.6e-160 568.9 479 60.3
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 8.1e-160 567.8 446 66.4
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 6.8e-159 564.7 478 60.5
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.5e-158 563.5 478 60.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.0e-158 563.1 488 59.6
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 4.9e-157 558.5 479 59.5
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 4.9e-157 558.5 479 59.5
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.4e-156 556.2 479 58.9
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 4.2e-156 555.4 397 72.3
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.1e-156 554.7 477 58.3
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 2.1e-155 553.1 486 59.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.6e-155 552.0 496 58.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 8.7e-154 547.7 493 59.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 8.7e-154 547.7 484 59.7
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.5e-153 547.0 484 59.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-152 543.5 480 59.0
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 2.8e-152 542.7 479 57.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.9e-151 538.1 479 57.4
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.0e-150 536.6 479 58.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 2.0e-150 536.6 482 57.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.4e-150 535.8 482 57.7
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 7.6e-150 534.6 482 57.5
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 7.6e-150 534.6 482 57.5
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 7.6e-150 534.6 415 67.0
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.9e-148 530.0 397 68.8
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 2.4e-148 529.6 481 57.0
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.6e-147 526.9 400 67.0
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.0e-138 497.7 500 53.4
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.0e-138 496.1 446 59.4
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 6.7e-138 495.0 509 53.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 5.6e-137 491.9 284 80.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.8e-135 486.9 398 61.1
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 2.0e-134 483.4 445 58.7
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.2e-132 476.1 466 56.2
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 5.5e-132 475.3 446 57.4
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 9.3e-132 474.6 281 77.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.3e-130 469.9 399 62.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.9e-130 469.2 341 67.7
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 9.6e-129 464.5 514 49.0
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.2e-126 457.6 286 74.8
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.9e-125 453.0 482 51.5
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.9e-124 450.3 472 52.5
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 3.9e-122 442.6 393 55.7
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.5e-121 440.7 331 63.1
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 9.7e-121 438.0 300 67.3
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.1e-105 387.9 399 50.4
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.8e-103 380.6 285 62.1
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 7.4e-97 358.6 284 61.3
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 5.3e-95 352.4 414 47.1
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 6.5e-93 345.5 294 55.4
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.6e-91 340.9 388 46.1
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.8e-90 335.1 305 59.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 8.5e-85 318.5 416 43.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.0e-81 307.4 306 59.5
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 2.9e-72 276.9 380 44.5
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 6.4e-64 249.2 201 60.7
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.1e-55 221.9 187 59.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 5.2e-50 203.0 194 57.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.6e-49 199.1 171 57.9
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.2e-39 167.2 92 80.4
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.4e-39 166.4 93 79.6
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.0e-37 162.2 144 55.6
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.0e-37 162.2 144 55.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-37 161.0 146 61.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-37 161.0 91 78.0
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.7e-37 159.1 126 57.1
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 3.1e-34 150.6 199 51.3
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 5.8e-33 146.4 127 63.0
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 5.4e-31 139.8 114 64.9
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.6e-30 138.3 82 74.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.6e-30 138.3 82 74.4
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.3e-29 134.4 130 58.5
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-28 132.1 183 44.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-23 114.4 152 45.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.3e-21 107.8 140 48.6
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 4.0e-18 97.1 166 36.7
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 9.0e-18 95.9 68 66.2
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 2.5e-12 77.8 45 75.6


User provided reference genes

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