Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0033900 Rhododendron simsii HOM05D006190 ORTHO05D008260 1.0e-290 1002.7 487 100.0
Rhsim04G0034400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.6e-254 881.7 474 92.0
Rhsim06G0167400 Rhododendron simsii HOM05D006190 ORTHO05D008260 2.4e-252 875.2 474 91.6
Rhsim04G0027600 Rhododendron simsii HOM05D006190 ORTHO05D008260 7.3e-233 810.4 475 86.5
vmacro12161 Vaccinium macrocarpon HOM05D006190 ORTHO05D008260 3.6e-232 808.1 474 84.2
CSS0039152 Camellia sinensis var. sinensis HOM05D006190 ORTHO05D008260 4.4e-214 748.0 481 76.5
Actinidia09748 Actinidia chinensis HOM05D006190 ORTHO05D008260 3.9e-210 734.9 479 75.4
Dinv39750 Davidia involucrata HOM05D006190 ORTHO05D008260 1.5e-206 723.0 479 74.3
GSVIVG01030506001 Vitis vinifera HOM05D006190 ORTHO05D008260 2.1e-195 686.0 478 69.9
Cfa014317 Carpinus fangiana HOM05D006190 ORTHO05D008260 1.0e-194 683.7 478 70.7
MD17G1106200 Malus domestica HOM05D006190 ORTHO05D008260 2.3e-194 682.6 479 68.9
Thecc.01G182400 Theobroma cacao HOM05D006190 ORTHO05D008260 1.6e-192 676.4 478 69.7
Ciclev10017756m.g Citrus clementina HOM05D006190 ORTHO05D008260 2.8e-192 675.6 478 68.2
Nitab4.5_0006063g0030 Nicotiana tabacum HOM05D006190 ORTHO05D008260 4.8e-192 674.9 481 69.9
Sopen05g026250 Solanum pennellii HOM05D006190 ORTHO05D008260 4.8e-192 674.9 476 70.4
TWI36G1256 Tripterygium wilfordii HOM05D006190 ORTHO05D008260 1.8e-191 672.9 478 69.2
Solyc05g042120.4 Solanum lycopersicum HOM05D006190 ORTHO05D008260 2.4e-191 672.5 476 70.2
Prupe.3G210000 Prunus persica HOM05D006190 ORTHO05D008260 4.5e-190 668.3 479 68.1
Gohir.D07G088600 Gossypium hirsutum HOM05D006190 ORTHO05D008260 2.9e-189 665.6 478 68.4
Lj1A781G46 Lonicera japonica HOM05D006190 ORTHO05D008260 2.9e-189 665.6 476 69.1
Manes.13G065900 Manihot esculenta HOM05D006190 ORTHO05D008260 2.9e-189 665.6 482 69.5
Potri.002G224300 Populus trichocarpa HOM05D006190 ORTHO05D008260 4.9e-189 664.8 482 68.0
Gohir.A07G082100 Gossypium hirsutum HOM05D006190 ORTHO05D008260 6.4e-189 664.5 478 68.4
Lsat_1_v5_gn_9_105860 Lactuca sativa HOM05D006190 ORTHO05D008260 3.2e-188 662.1 480 66.5
Gorai.001G095000 Gossypium raimondii HOM05D006190 ORTHO05D008260 4.2e-188 661.8 478 68.2
FvH4_6g42100 Fragaria vesca HOM05D006190 ORTHO05D008260 7.9e-187 657.5 481 66.5
FAN02G1605 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.0e-186 657.1 481 66.3
FAN14G2650 Fragaria x ananassa HOM05D006190 ORTHO05D008260 1.0e-186 657.1 481 66.5
FAN05G0691 Fragaria x ananassa HOM05D006190 ORTHO05D008260 3.9e-186 655.2 481 66.5
Atru.chr6.3259 Acer truncatum HOM05D006190 ORTHO05D008260 1.1e-185 653.7 483 66.5
RcHm_v2.0_Chr2g0158021 Rosa chinensis HOM05D006190 ORTHO05D008260 3.6e-184 648.7 480 65.8
CsaV3_6G037760 Cucumis sativus L. HOM05D006190 ORTHO05D008260 4.8e-184 648.3 480 66.0
Sed0027843 Sechium edule HOM05D006190 ORTHO05D008260 6.2e-184 647.9 480 65.4
ClCG09G011200 Citrullus lanatus HOM05D006190 ORTHO05D008260 8.1e-184 647.5 480 66.2
HanXRQChr03g0075981 Helianthus annuus HOM05D006190 ORTHO05D008260 4.0e-183 645.2 480 65.8
EL10Ac8g20037 Beta vulgaris HOM05D006190 ORTHO05D008260 1.2e-182 643.7 479 67.0
Sabra02G0171700 Salix brachista HOM05D006190 ORTHO05D008260 2.6e-182 642.5 502 64.7
MD09G1114700 Malus domestica HOM05D006190 ORTHO05D008260 1.3e-181 640.2 519 61.1
QL08p030638 Quercus lobata HOM05D006190 ORTHO05D008260 1.4e-180 636.7 495 64.2
PGR083G2874 Punica granatum HOM05D006190 ORTHO05D008260 3.2e-180 635.6 478 65.3
Migut.F01671 Erythranthe guttata HOM05D006190 ORTHO05D008260 6.0e-179 631.3 475 66.7
arahy.Tifrunner.gnm1.ann1.5R2QIE Arachis hypogaea HOM05D006190 ORTHO05D008260 7.9e-179 630.9 491 63.1
MSTRG.8117 Avicennia marina HOM05D006190 ORTHO05D008260 7.9e-179 630.9 473 66.0
MELO3C014435.2 Cucumis melo HOM05D006190 ORTHO05D008260 2.3e-178 629.4 504 62.9
Hund00609 Selenicereus undatus HOM05D006190 ORTHO05D008260 2.3e-178 629.4 487 64.5
arahy.Tifrunner.gnm1.ann1.BBUS42 Arachis hypogaea HOM05D006190 ORTHO05D008260 3.0e-178 629.0 491 62.9
Nn1g07299 Nelumbo nucifera HOM05D006190 ORTHO05D008260 3.9e-178 628.6 481 65.3
DCAR_019742 Daucus carota HOM05D006190 ORTHO05D008260 3.3e-177 625.5 478 64.4
Aa31LG5G5620 Aethionema arabicum HOM05D006190 ORTHO05D008260 9.6e-177 624.0 478 63.8
THA.LOC104800883 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 9.6e-177 624.0 478 63.8
Peaxi162Scf00100g01525 Petunia axillaris HOM05D006190 ORTHO05D008260 3.7e-176 622.1 473 66.4
THA.LOC104798591 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 6.2e-176 621.3 481 63.8
Haze_12765 Corylus avellana HOM05D006190 ORTHO05D008260 1.8e-175 619.8 487 65.3
ECA240G2645 Erigeron canadensis HOM05D006190 ORTHO05D008260 3.1e-175 619.0 477 63.7
Lalb_Chr04g0264321 Lupinus albus HOM05D006190 ORTHO05D008260 5.3e-175 618.2 487 63.7
SGA_v2.0_scaffold13G06447 Striga asiatica HOM05D006190 ORTHO05D008260 5.8e-174 614.8 475 64.4
BcaB02g10385 Brassica carinata HOM05D006190 ORTHO05D008260 1.0e-173 614.0 476 62.4
Nitab4.5_0000019g0350 Nicotiana tabacum HOM05D006190 ORTHO05D008260 1.3e-173 613.6 475 65.5
Ca_16289_v3 Cicer arietinum L. HOM05D006190 ORTHO05D008260 1.7e-173 613.2 486 61.9
AL4G26570 Arabidopsis lyrata HOM05D006190 ORTHO05D008260 2.9e-173 612.5 477 62.7
AT2G31340 Arabidopsis thaliana HOM05D006190 ORTHO05D008260 4.9e-173 611.7 477 62.9
Thhalv10016459m.g Eutrema salsugineum HOM05D006190 ORTHO05D008260 4.9e-173 611.7 477 62.1
Glyma.20G058400 Glycine max HOM05D006190 ORTHO05D008260 6.5e-173 611.3 486 63.4
Carub.0004s1265 Capsella rubella HOM05D006190 ORTHO05D008260 1.4e-172 610.1 476 62.8
BcaC02g11229 Brassica carinata HOM05D006190 ORTHO05D008260 1.9e-172 609.8 477 62.7
Sc06g0009680 Simmondsia chinensis HOM05D006190 ORTHO05D008260 3.5e-171 605.5 484 62.2
Sp4g13810 Schrenkiella parvula HOM05D006190 ORTHO05D008260 4.3e-169 598.6 477 61.6
Phvul.006G013000 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 2.8e-168 595.9 488 62.3
Phvul.011G111400 Phaseolus vulgaris HOM05D006190 ORTHO05D008260 8.5e-165 584.3 488 61.7
Aqoxy3G00055 Aquilegia oxysepala HOM05D006190 ORTHO05D008260 9.3e-164 580.9 484 59.5
Lj6g0020329 Lotus japonicus HOM05D006190 ORTHO05D008260 2.1e-163 579.7 483 61.1
Medtr3g080550 Medicago truncatula HOM05D006190 ORTHO05D008260 1.8e-162 576.6 486 59.7
PSO675G0778 Papaver somniferum HOM05D006190 ORTHO05D008260 1.8e-159 566.6 481 59.9
PSO541G5374 Papaver somniferum HOM05D006190 ORTHO05D008260 2.4e-159 566.2 481 59.9
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.2e-157 559.7 479 60.3
MBI19_g03678_MAGBIO Magnolia biondii HOM05D006190 ORTHO05D008260 3.2e-156 555.8 491 58.5
Eucgr.A01784 Eucalyptus grandis HOM05D006190 ORTHO05D008260 5.9e-150 535.0 474 58.0
HPP92_020505 Vanilla planifolia HOM05D006190 ORTHO05D008260 5.0e-149 531.9 475 55.2
AUR62006846 Chenopodium quinoa HOM05D006190 ORTHO05D008260 5.5e-148 528.5 479 58.0
AUR62000500 Chenopodium quinoa HOM05D006190 ORTHO05D008260 3.9e-146 522.3 479 57.6
Cpa.g.sc132.24 Carica papaya HOM05D006190 ORTHO05D008260 4.5e-142 508.8 624 47.4
CiPaw.03G155000 Carya illinoinensis HOM05D006190 ORTHO05D008260 2.5e-140 503.1 372 67.7
COL.COLO4_21885 Corchorus olitorius HOM05D006190 ORTHO05D008260 9.4e-140 501.1 372 65.9
Ah.06g190910 Amaranthus hybridus HOM05D006190 ORTHO05D008260 5.7e-137 491.9 475 54.9
Eucgr.K00752 Eucalyptus grandis HOM05D006190 ORTHO05D008260 5.7e-137 491.9 372 65.3
unitig_46.g18456 Utricularia gibba HOM05D006190 ORTHO05D008260 1.8e-130 470.3 491 52.3
Zm00001eb309080 Zea mays HOM05D006190 ORTHO05D008260 2.8e-128 463.0 478 50.0
Os09g0296400 Oryza sativa ssp. japonica HOM05D006190 ORTHO05D008260 4.8e-128 462.2 477 50.5
TPR.G342 Trifolium pratense HOM05D006190 ORTHO05D008260 1.8e-127 460.3 402 58.5
ATR0736G101 Amborella trichopoda HOM05D006190 ORTHO05D008260 1.7e-120 437.2 502 48.4
Oeu015050.1 Olea europaea HOM05D006190 ORTHO05D008260 3.0e-114 416.4 317 64.4
A05p14270 Brassica napus HOM05D006190 ORTHO05D008260 2.7e-110 403.3 315 62.2
TAR020G0003 Trochodendron aralioides HOM05D006190 ORTHO05D008260 2.5e-108 396.7 317 63.7
VMungo1127G1525 Vigna mungo HOM05D006190 ORTHO05D008260 1.3e-104 384.4 705 35.9
SHI10054 Sapria himalayana HOM05D006190 ORTHO05D000001 1.1e-95 354.8 324 54.9
CAN.G795.2 Capsicum annuum HOM05D006190 ORTHO05D008260 2.0e-89 334.0 258 65.1
FAN18G3300 Fragaria x ananassa HOM05D006190 ORTHO05D008260 6.6e-85 318.9 249 63.9
Psat5g111200 Pisum sativum HOM05D006190 ORTHO05D008260 3.3e-84 316.6 227 65.2
CARHR124960 Cardamine hirsuta HOM05D006190 ORTHO05D008260 3.6e-83 313.2 267 58.8
Aa31sc34G90 Aethionema arabicum HOM05D006190 ORTHO05D008260 1.2e-81 308.1 236 61.9
Psat5g111240 Pisum sativum HOM05D006190 ORTHO05D008260 1.6e-78 297.7 271 56.5
Pp3c23_22000 Physcomitrium patens HOM05D006190 ORTHO05D008260 4.3e-76 289.7 515 35.3
CDE07G0814 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 2.6e-73 280.4 218 59.2
Mapoly0014s0084 Marchantia polymorpha HOM05D006190 ORTHO05D008260 6.2e-67 259.2 500 32.0
Sopen11g022430 Solanum pennellii HOM05D006190 ORTHO05D008260 1.5e-60 238.0 194 61.9
SHI10056 Sapria himalayana HOM05D006190 ORTHO05D008260 4.0e-58 229.9 153 69.9
THA.LOC104822845 Tarenaya hassleriana HOM05D006190 ORTHO05D008260 2.7e-54 217.2 140 71.4
C04p19010 Brassica napus HOM05D006190 ORTHO05D008260 3.0e-53 213.8 165 63.0
TPR.G18389 Trifolium pratense HOM05D006190 ORTHO05D008260 2.1e-46 191.0 131 66.4
CBR_g25881 Chara braunii HOM05D006190 ORTHO05D008260 1.8e-42 177.9 288 37.8
SEGI_33791 Sequoiadendron giganteum HOM05D006190 ORTHO05D008260 6.1e-38 162.9 145 51.7
FAN10G3459 Fragaria x ananassa HOM05D006190 ORTHO05D008260 8.8e-37 159.1 143 55.9
TPR.G36458 Trifolium pratense HOM05D006190 ORTHO05D008260 1.5e-36 158.3 107 66.4
Sabra14G0120600 Salix brachista HOM05D006190 ORTHO05D008260 3.1e-34 150.6 170 50.6
Lsat_1_v5_gn_5_72540 Lactuca sativa HOM05D006190 ORTHO05D008260 3.8e-32 143.7 98 67.3
BcaC01g05972 Brassica carinata HOM05D006190 ORTHO05D008260 5.3e-26 123.2 137 48.9
C03p20570 Brassica napus HOM05D006190 ORTHO05D008260 1.1e-23 115.5 137 46.7
Oeu015049.1 Olea europaea HOM05D006190 ORTHO05D008260 2.7e-22 110.9 77 74.0
CDE04G2645 Ceratophyllum demersum HOM05D006190 ORTHO05D008260 2.1e-14 84.7 116 40.5
Lsat_1_v5_gn_1_125520 Lactuca sativa HOM05D006190 ORTHO05D008260 1.5e-12 78.6 64 59.4
Rhsim04G0034300 Rhododendron simsii HOM05D001260 ORTHO05D004134 1.8e-10 71.6 38 92.1
BcaC01g05961 Brassica carinata HOM05D006190 ORTHO05D008260 7.0e-10 69.7 85 45.9


User provided reference genes

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