Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0032500 Rhododendron simsii HOM05D002115 ORTHO05D002263 1.2e-61 239.6 118 100.0
Rhsim04G0032200 Rhododendron simsii HOM05D002115 ORTHO05D002263 9.9e-35 150.2 193 47.7
CSS0007528 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.2e-29 133.3 196 43.9
CSS0039958 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.2e-29 133.3 196 43.9
Nn3g20355 Nelumbo nucifera HOM05D002115 ORTHO05D002263 3.1e-28 128.6 154 48.7
CSS0012321 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 5.2e-28 127.9 195 43.1
CSS0006096 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.5e-27 126.3 195 42.6
TAR629G1494 Trochodendron aralioides HOM05D002115 ORTHO05D002263 1.0e-23 113.6 195 38.5
Cc05_g09970 Coffea canephora HOM05D002115 ORTHO05D002263 1.1e-22 110.2 195 39.0
TAR627G0134 Trochodendron aralioides HOM05D002115 ORTHO05D002263 1.9e-22 109.4 194 39.2
Lj8A139T62 Lonicera japonica HOM05D002115 ORTHO05D002263 4.3e-22 108.2 196 37.8
Dinv21343 Davidia involucrata HOM05D002115 ORTHO05D002263 5.6e-22 107.8 195 39.5
Ah.06g187380 Amaranthus hybridus HOM05D002115 ORTHO05D002263 1.3e-21 106.7 193 38.9
Peaxi162Scf00111g00532 Petunia axillaris HOM05D002115 ORTHO05D002263 2.8e-21 105.5 195 38.5
EL10Ac4g08514 Beta vulgaris HOM05D002115 ORTHO05D002263 3.6e-21 105.1 193 37.8
AUR62042840 Chenopodium quinoa HOM05D002115 ORTHO05D002263 1.8e-20 102.8 193 37.8
CiPaw.10G089000 Carya illinoinensis HOM05D002115 ORTHO05D002263 3.1e-20 102.1 83 61.4
Aqoxy4G00083 Aquilegia oxysepala HOM05D002115 ORTHO05D002263 5.3e-20 101.3 83 60.2
AUR62041253 Chenopodium quinoa HOM05D002115 ORTHO05D002263 9.0e-20 100.5 193 37.3
Cpa.g.sc229.1 Carica papaya HOM05D002115 ORTHO05D002263 1.2e-19 100.1 94 55.3
Atru.chr10.1123 Acer truncatum HOM05D002115 ORTHO05D002263 2.0e-19 99.4 79 62.0
CiPaw.09G120200 Carya illinoinensis HOM05D002115 ORTHO05D002263 2.6e-19 99.0 83 60.2
Hund10312 Selenicereus undatus HOM05D002115 ORTHO05D002263 3.4e-19 98.6 91 57.1
Solyc07g056030.3 Solanum lycopersicum HOM05D002115 ORTHO05D002263 3.4e-19 98.6 195 36.4
PGSC0003DMG400031100 Solanum tuberosum HOM05D002115 ORTHO05D002263 4.5e-19 98.2 195 36.4
Lalb_Chr13g0294001 Lupinus albus HOM05D002115 ORTHO05D002263 5.8e-19 97.8 85 60.0
Potri.011G081200 Populus trichocarpa HOM05D002115 ORTHO05D002263 5.8e-19 97.8 83 60.2
QL05p055199 Quercus lobata HOM05D002115 ORTHO05D002263 5.8e-19 97.8 194 35.6
Sopen07g029380 Solanum pennellii HOM05D002115 ORTHO05D002263 7.6e-19 97.4 195 35.9
Ciclev10014165m.g Citrus clementina HOM05D002115 ORTHO05D002263 9.9e-19 97.1 191 36.1
Lalb_Chr07g0187511 Lupinus albus HOM05D002115 ORTHO05D002263 1.3e-18 96.7 84 58.3
Nitab4.5_0004166g0030 Nicotiana tabacum HOM05D002115 ORTHO05D002263 1.3e-18 96.7 83 59.0
arahy.Tifrunner.gnm1.ann1.2Y4SM6 Arachis hypogaea HOM05D002115 ORTHO05D002263 2.9e-18 95.5 85 58.8
arahy.Tifrunner.gnm1.ann1.949BMZ Arachis hypogaea HOM05D002115 ORTHO05D002263 2.9e-18 95.5 85 58.8
arahy.Tifrunner.gnm1.ann1.X0DSCJ Arachis hypogaea HOM05D002115 ORTHO05D002263 2.9e-18 95.5 85 58.8
CAN.G585.4 Capsicum annuum HOM05D002115 ORTHO05D002263 3.8e-18 95.1 195 35.9
Haze_05655 Corylus avellana HOM05D002115 ORTHO05D002263 6.4e-18 94.4 195 34.9
DCAR_019646 Daucus carota HOM05D002115 ORTHO05D002263 6.4e-18 94.4 193 35.2
PGR031G3691 Punica granatum HOM05D002115 ORTHO05D002263 6.4e-18 94.4 111 50.5
Lj4g0017001 Lotus japonicus HOM05D002115 ORTHO05D002263 8.4e-18 94.0 196 35.7
Eucgr.F03190 Eucalyptus grandis HOM05D002115 ORTHO05D002263 1.1e-17 93.6 107 51.4
Ca_18162_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 1.4e-17 93.2 85 58.8
Psat7g134600 Pisum sativum HOM05D002115 ORTHO05D002263 1.4e-17 93.2 85 57.6
Glyma.08G099500 Glycine max HOM05D002115 ORTHO05D002263 1.9e-17 92.8 84 58.3
MD10G1258600 Malus domestica HOM05D002115 ORTHO05D002263 2.4e-17 92.4 84 60.7
CANSAT35G1551 Cannabis sativa HOM05D002115 ORTHO05D002263 3.2e-17 92.0 191 36.1
PSO675G7753 Papaver somniferum HOM05D002115 ORTHO05D002263 3.2e-17 92.0 84 57.1
Prupe.4G085100 Prunus persica HOM05D002115 ORTHO05D002263 3.2e-17 92.0 195 35.4
Sc07g0003090 Simmondsia chinensis HOM05D002115 ORTHO05D002263 3.2e-17 92.0 91 54.9
MSTRG.14265 Avicennia marina HOM05D002115 ORTHO05D002263 4.2e-17 91.7 192 34.9
Thecc.06G145100 Theobroma cacao HOM05D002115 ORTHO05D002263 4.2e-17 91.7 195 34.9
MD03G1137700 Malus domestica HOM05D002115 ORTHO05D002263 5.4e-17 91.3 84 58.3
SalBow7G3109 Salvia bowleyana HOM05D002115 ORTHO05D002263 5.4e-17 91.3 190 35.3
SalBow7G3339 Salvia bowleyana HOM05D002115 ORTHO05D002263 5.4e-17 91.3 190 35.3
Duzib192G0494 Durio zibethinus HOM05D002115 ORTHO05D002263 7.1e-17 90.9 82 57.3
Manes.17G074000 Manihot esculenta HOM05D002115 ORTHO05D002263 1.6e-16 89.7 194 35.1
PSO541G2268 Papaver somniferum HOM05D002115 ORTHO05D002263 2.1e-16 89.4 84 56.0
Sabra11G0064700 Salix brachista HOM05D002115 ORTHO05D002263 2.1e-16 89.4 72 65.3
Sed0026904 Sechium edule HOM05D002115 ORTHO05D002263 3.5e-16 88.6 83 55.4
COL.COLO4_31017 Corchorus olitorius HOM05D002115 ORTHO05D002263 4.6e-16 88.2 78 59.0
TWI09G0160 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 4.6e-16 88.2 119 47.1
Glyma.05G143100 Glycine max HOM05D002115 ORTHO05D002263 6.0e-16 87.8 95 51.6
TWI53G2036 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 6.0e-16 87.8 78 55.1
Duzib160G0249 Durio zibethinus HOM05D002115 ORTHO05D002263 7.9e-16 87.4 82 56.1
SGA_v2.0_scaffold4G02144 Striga asiatica HOM05D002115 ORTHO05D002263 7.9e-16 87.4 81 55.6
CARHR017790 Cardamine hirsuta HOM05D002115 ORTHO05D002263 1.3e-15 86.7 93 51.6
Gohir.D06G144500 Gossypium hirsutum HOM05D002115 ORTHO05D002263 1.3e-15 86.7 195 33.3
Gorai.010G168200 Gossypium raimondii HOM05D002115 ORTHO05D002263 1.3e-15 86.7 195 33.3
Manes.15G124650 Manihot esculenta HOM05D002115 ORTHO05D002263 1.8e-15 86.3 84 52.4
SGA_v2.0_scaffold130G34243 Striga asiatica HOM05D002115 ORTHO05D002263 2.3e-15 85.9 94 54.3
Aa31LG4G2610 Aethionema arabicum HOM05D002115 ORTHO05D002263 3.0e-15 85.5 84 48.8
Duzib235G1503 Durio zibethinus HOM05D002115 ORTHO05D002263 3.0e-15 85.5 195 33.8
Glyma.08G231400 Glycine max HOM05D002115 ORTHO05D002263 3.0e-15 85.5 73 63.0
Dinv26636 Davidia involucrata HOM05D002115 ORTHO05D002263 5.1e-15 84.7 172 38.4
Sed0015162 Sechium edule HOM05D002115 ORTHO05D002263 5.1e-15 84.7 83 54.2
TPR.G9578 Trifolium pratense HOM05D002115 ORTHO05D002263 5.1e-15 84.7 73 58.9
AL1G29450 Arabidopsis lyrata HOM05D002115 ORTHO05D002263 8.7e-15 84.0 83 53.0
Medtr8g079465 Medicago truncatula HOM05D002115 ORTHO05D002263 8.7e-15 84.0 85 55.3
Carub.0001s1696 Capsella rubella HOM05D002115 ORTHO05D002263 1.1e-14 83.6 83 53.0
VMungo0251G1773 Vigna mungo HOM05D002115 ORTHO05D002263 1.1e-14 83.6 73 61.6
Gohir.A06G139800 Gossypium hirsutum HOM05D002115 ORTHO05D002263 1.5e-14 83.2 195 32.8
AT1G17210 Arabidopsis thaliana HOM05D002115 ORTHO05D002263 1.9e-14 82.8 83 53.0
Phvul.002G178200 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 1.9e-14 82.8 73 61.6
Migut.H02057 Erythranthe guttata HOM05D002115 ORTHO05D002263 5.6e-14 81.3 194 34.0
Gohir.A10G043600 Gossypium hirsutum HOM05D002115 ORTHO05D002263 1.3e-13 80.1 75 56.0
Gohir.D10G044800 Gossypium hirsutum HOM05D002115 ORTHO05D002263 1.3e-13 80.1 75 56.0
Gorai.011G047800 Gossypium raimondii HOM05D002115 ORTHO05D002263 1.3e-13 80.1 75 56.0
HanXRQChr09g0257501 Helianthus annuus HOM05D002115 ORTHO05D002263 1.3e-13 80.1 192 35.4
RcHm_v2.0_Chr5g0014771 Rosa chinensis HOM05D002115 ORTHO05D002263 1.6e-13 79.7 80 56.2
THA.LOC104813972 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 2.8e-13 79.0 83 49.4
MELO3C002767.2 Cucumis melo HOM05D002115 ORTHO05D002263 3.7e-13 78.6 83 50.6
CsaV3_1G036830 Cucumis sativus L. HOM05D002115 ORTHO05D002263 3.7e-13 78.6 83 50.6
BcaB07g34041 Brassica carinata HOM05D002115 ORTHO05D002263 6.2e-13 77.8 93 47.3
BcaC05g25656 Brassica carinata HOM05D002115 ORTHO05D002263 6.2e-13 77.8 93 47.3
C05p15630 Brassica napus HOM05D002115 ORTHO05D002263 6.2e-13 77.8 93 47.3
BolC5t30270H Brassica oleracea HOM05D002115 ORTHO05D002263 6.2e-13 77.8 93 47.3
ClCG03G006530 Citrullus lanatus HOM05D002115 ORTHO05D002263 1.1e-12 77.0 83 50.6
Sp1g15350 Schrenkiella parvula HOM05D002115 ORTHO05D002263 1.1e-12 77.0 83 49.4
A06p13130 Brassica napus HOM05D002115 ORTHO05D002263 1.8e-12 76.3 93 46.2
BraA06t24471Z Brassica rapa HOM05D002115 ORTHO05D002263 1.8e-12 76.3 93 46.2
THA.LOC104808073 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 1.8e-12 76.3 83 48.2
FAN16G0539 Fragaria x ananassa HOM05D002115 ORTHO05D002263 6.9e-12 74.3 77 55.8
Thhalv10006705m.g Eutrema salsugineum HOM05D002115 ORTHO05D002263 1.2e-11 73.6 83 47.0
FvH4_3g05100 Fragaria vesca HOM05D002115 ORTHO05D002263 1.2e-11 73.6 77 55.8
FAN11G3721 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.2e-11 73.6 77 55.8
FAN16G1035 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.2e-11 73.6 77 55.8
ATR1098G055 Amborella trichopoda HOM05D002115 ORTHO05D002263 1.5e-11 73.2 83 49.4
FAN21G3828 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.5e-11 73.2 77 55.8
MBI18_g11225_MAGBIO Magnolia biondii HOM05D002115 ORTHO05D002263 2.0e-11 72.8 194 30.4
TWI73G1220 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 2.6e-11 72.4 79 51.9
Os03g0785300 Oryza sativa ssp. japonica HOM05D002115 ORTHO05D002263 9.9e-11 70.5 77 50.6
DCAR_013808 Daucus carota HOM05D002115 ORTHO05D002263 1.3e-10 70.1 193 32.1
Oeu012707.1 Olea europaea HOM05D002115 ORTHO05D002263 1.3e-10 70.1 171 35.7
Zm00001eb300000 Zea mays HOM05D002115 ORTHO05D002263 1.3e-10 70.1 81 45.7
ECA240G2296 Erigeron canadensis HOM05D002115 ORTHO05D002263 3.8e-10 68.6 81 51.9
C08p17760 Brassica napus HOM05D002115 ORTHO05D002263 6.4e-10 67.8 89 44.9
BolC8t49402H Brassica oleracea HOM05D002115 ORTHO05D002263 6.4e-10 67.8 89 44.9
A08p31040 Brassica napus HOM05D002115 ORTHO05D002263 1.4e-09 66.6 89 43.8
ECA236G4492 Erigeron canadensis HOM05D002115 ORTHO05D002263 1.9e-09 66.2 186 32.3
Os07g0150500 Oryza sativa ssp. japonica HOM05D002115 ORTHO05D002263 1.9e-09 66.2 84 42.9
BraA08t35033Z Brassica rapa HOM05D002115 ORTHO05D002263 4.2e-09 65.1 89 42.7
VMungo1080G0789 Vigna mungo HOM05D002115 ORTHO05D002263 1.2e-08 63.5 88 44.3
Zm00001eb059900 Zea mays HOM05D002115 ORTHO05D002263 1.2e-08 63.5 77 44.2
Phvul.005G054700 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 1.6e-08 63.2 88 43.2
Glyma.08G174100 Glycine max HOM05D002115 ORTHO05D002263 1.3e-07 60.1 90 42.2
Actinidia18815 Actinidia chinensis HOM05D002115 ORTHO05D002263 1.8e-07 59.7 146 33.6
HanXRQChr11g0330041 Helianthus annuus HOM05D002115 ORTHO05D002263 1.8e-07 59.7 178 29.8
Ca_03710_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 3.9e-07 58.5 87 44.8
SHI24853 Sapria himalayana HOM05D002115 ORTHO05D002263 3.9e-07 58.5 80 42.5
Lj3g0017411 Lotus japonicus HOM05D002115 ORTHO05D002263 1.1e-06 57.0 111 37.8
unitig_52.g17392 Utricularia gibba HOM05D002115 ORTHO05D002263 1.5e-06 56.6 82 42.7
TPR.G27155 Trifolium pratense HOM05D002115 ORTHO05D002263 3.3e-06 55.5 179 29.6
Glyma.15G253100 Glycine max HOM05D002115 ORTHO05D002263 4.3e-06 55.1 88 42.0
Medtr2g064880 Medicago truncatula HOM05D002115 ORTHO05D002263 5.6e-06 54.7 188 27.1


User provided reference genes

Program Settings