Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-71 273.1 134 100.0
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.9e-43 178.7 91 97.8
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.1e-37 158.3 82 95.1
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.0e-37 157.5 90 84.4
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 4.6e-36 154.8 104 76.0
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.9e-36 154.5 86 86.0
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.0e-35 151.4 90 82.2
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.0e-35 151.4 108 71.3
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.0e-35 151.4 108 71.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 8.6e-35 150.6 86 83.7
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.1e-34 150.2 124 65.3
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.5e-34 149.8 95 78.9
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.9e-34 149.4 89 83.1
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.5e-34 149.1 90 81.1
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.5e-34 149.1 90 81.1
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 2.5e-34 149.1 90 81.1
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 2.5e-34 149.1 87 82.8
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 3.3e-34 148.7 109 70.6
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 7.3e-34 147.5 122 62.3
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 9.5e-34 147.1 119 64.7
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 9.5e-34 147.1 104 73.1
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.2e-33 146.7 90 80.0
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 1.2e-33 146.7 85 81.2
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.6e-33 146.4 89 79.8
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.6e-33 146.4 109 69.7
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.6e-33 146.4 87 80.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.1e-33 146.0 85 81.2
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.1e-33 146.0 85 78.8
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.1e-33 146.0 85 78.8
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 2.8e-33 145.6 119 62.2
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.6e-33 145.2 85 80.0
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.2e-33 144.4 87 77.0
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 6.2e-33 144.4 87 77.0
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 8.0e-33 144.1 90 77.8
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.0e-32 143.7 85 81.2
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.0e-32 143.7 85 81.2
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.4e-32 143.3 90 77.8
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.8e-32 142.9 86 77.9
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.8e-32 142.9 87 77.0
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.3e-32 142.5 86 79.1
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.3e-32 142.5 106 68.9
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 3.1e-32 142.1 90 78.9
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 3.1e-32 142.1 140 54.3
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 4.0e-32 141.7 141 53.9
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 4.0e-32 141.7 86 77.9
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.0e-32 141.7 104 70.2
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 5.2e-32 141.4 88 76.1
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 5.2e-32 141.4 90 75.6
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 5.2e-32 141.4 109 67.0
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.2e-32 141.4 85 80.0
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 6.8e-32 141.0 90 76.7
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 6.8e-32 141.0 85 75.3
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 6.8e-32 141.0 86 75.6
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 8.9e-32 140.6 84 79.8
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 8.9e-32 140.6 104 64.4
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 8.9e-32 140.6 104 64.4
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 8.9e-32 140.6 111 62.2
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 8.9e-32 140.6 85 75.3
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 1.2e-31 140.2 84 77.4
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.2e-31 140.2 90 77.8
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.2e-31 140.2 103 69.9
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.2e-31 140.2 86 76.7
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 1.5e-31 139.8 85 75.3
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.5e-31 139.8 111 62.2
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 1.5e-31 139.8 85 80.0
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.0e-31 139.4 86 76.7
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.0e-31 139.4 90 75.6
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.0e-31 139.4 85 80.0
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.6e-31 139.0 90 73.3
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.6e-31 139.0 90 76.7
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.6e-31 139.0 109 64.2
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 3.4e-31 138.7 85 77.6
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.4e-31 138.7 85 77.6
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.4e-31 138.7 85 77.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 3.4e-31 138.7 90 77.8
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 4.4e-31 138.3 86 75.6
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.4e-31 138.3 90 73.3
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.5e-31 137.5 85 76.5
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.2e-30 136.0 88 72.7
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 2.2e-30 136.0 86 73.3
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 3.7e-30 135.2 87 74.7
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.4e-29 133.3 90 70.0
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.4e-29 132.5 91 64.8
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.2e-29 132.1 90 72.2
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 3.2e-29 132.1 109 59.6
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 3.2e-29 132.1 90 70.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.1e-29 131.7 85 75.3
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 4.1e-29 131.7 109 60.6
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 2.7e-28 129.0 90 67.8
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 6.0e-28 127.9 83 68.7
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.7e-27 126.3 109 56.9
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.7e-27 126.3 106 56.6
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 8.6e-27 124.0 86 67.4
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.9e-26 122.9 91 67.0
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 2.5e-26 122.5 86 67.4
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 9.5e-26 120.6 109 56.9
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.6e-25 119.8 109 56.9
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 4.0e-24 115.2 114 54.4
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 6.8e-24 114.4 61 90.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.6e-23 112.5 72 79.2
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 7.5e-23 110.9 66 81.8
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.1e-21 107.1 63 77.8
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.9e-21 106.3 62 80.6
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 2.7e-20 102.4 82 65.9
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 3.5e-20 102.1 57 84.2
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 6.0e-20 101.3 83 63.9
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 3.0e-19 99.0 52 88.5
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.9e-19 98.6 60 75.0
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 1.1e-18 97.1 85 52.9
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 5.6e-18 94.7 84 52.4
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 2.8e-17 92.4 60 75.0
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-16 90.5 52 82.7
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.1e-16 90.5 60 73.3
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 4.0e-16 88.6 60 71.7
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-15 87.0 58 72.4
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 4.4e-15 85.1 54 74.1
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 7.6e-15 84.3 60 70.0
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.4e-13 78.2 53 73.6
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-10 70.1 60 63.3
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 3.3e-10 68.9 79 36.7
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.8e-08 61.2 36 75.0


User provided reference genes

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