Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 5.1e-266 920.6 498 100.0
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 2.5e-172 609.4 377 78.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.1e-163 579.7 469 63.5
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 1.3e-160 570.5 467 63.4
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 2.2e-160 569.7 465 61.1
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 4.2e-159 565.5 467 62.3
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 1.7e-157 560.1 466 60.1
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.6e-156 555.1 459 60.1
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 9.0e-154 547.7 477 59.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 2.0e-153 546.6 457 59.7
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.6e-153 546.2 467 59.3
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.3e-149 533.9 454 59.0
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.7e-149 533.5 462 58.0
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 2.5e-148 529.6 467 58.9
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.6e-148 528.5 474 58.9
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 9.6e-148 527.7 463 58.5
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 4.8e-147 525.4 462 57.4
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 6.2e-147 525.0 467 60.0
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 8.1e-147 524.6 470 58.7
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.1e-146 524.2 463 57.0
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 3.1e-146 522.7 463 57.9
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.2e-145 520.8 456 59.0
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 2.0e-145 520.0 462 56.9
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 9.9e-145 517.7 379 66.2
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.7e-144 516.9 474 57.8
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 9.3e-143 511.1 469 57.6
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 1.9e-140 503.4 468 56.2
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 9.6e-140 501.1 380 65.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 3.1e-138 496.1 371 66.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 4.0e-138 495.7 468 53.4
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.0e-138 495.7 379 62.8
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 4.0e-138 495.7 470 55.5
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 5.3e-138 495.4 467 53.7
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 1.5e-137 493.8 463 55.9
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 1.5e-137 493.8 474 54.4
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 2.0e-137 493.4 467 53.3
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 5.8e-137 491.9 469 55.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 5.8e-137 491.9 469 54.8
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 5.8e-137 491.9 467 54.0
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 2.2e-136 490.0 471 55.0
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 2.9e-136 489.6 465 53.3
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 2.9e-136 489.6 472 54.4
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 2.9e-136 489.6 469 55.2
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 4.9e-136 488.8 379 63.1
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 8.4e-136 488.0 465 53.1
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.9e-135 486.9 465 53.1
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 2.5e-135 486.5 477 54.1
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 5.5e-135 485.3 468 54.1
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 5.5e-135 485.3 469 54.2
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.2e-134 484.2 463 54.6
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.6e-134 483.8 465 52.9
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.5e-134 482.6 465 54.6
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 6.0e-134 481.9 457 55.1
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 7.9e-134 481.5 469 54.2
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.0e-133 481.1 480 55.2
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.8e-133 480.3 465 53.3
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 3.9e-133 479.2 474 55.3
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 5.1e-133 478.8 471 54.6
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 5.1e-133 478.8 379 63.6
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 8.7e-133 478.0 471 54.6
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 1.1e-132 477.6 471 54.6
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 1.1e-132 477.6 471 54.6
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 1.1e-132 477.6 511 54.8
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.1e-132 477.6 473 55.0
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.5e-132 477.2 471 54.6
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 2.5e-132 476.5 471 55.0
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 5.7e-132 475.3 465 53.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 1.6e-131 473.8 468 56.6
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 4.8e-131 472.2 378 61.9
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 8.2e-131 471.5 471 53.7
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 5.3e-130 468.8 453 54.3
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 5.3e-130 468.8 503 49.1
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 9.0e-130 468.0 376 60.9
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.5e-129 467.2 378 61.4
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 2.2e-128 463.4 468 51.9
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.1e-127 461.1 469 51.4
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.1e-127 461.1 455 52.1
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 1.1e-124 451.1 490 51.0
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 4.8e-123 445.7 464 52.6
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 6.9e-122 441.8 378 57.9
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.0e-120 438.0 382 57.3
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 2.9e-120 436.4 495 47.9
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 4.2e-119 432.6 378 56.6
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.2e-118 431.0 470 52.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.1e-118 430.3 456 47.6
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 6.7e-117 425.2 468 51.7
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.1e-116 424.5 467 49.9
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 9.7e-116 421.4 468 50.2
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 9.7e-116 421.4 379 56.2
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.7e-115 420.6 454 51.3
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 1.4e-114 417.5 351 57.8
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 4.1e-114 416.0 465 49.2
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 3.2e-111 406.4 393 54.5
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 5.3e-106 389.0 464 49.4
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.3e-99 367.9 387 51.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 8.2e-99 365.2 316 54.7
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 4.5e-97 359.4 481 42.6
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 7.7e-97 358.6 483 43.9
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 7.2e-95 352.1 474 44.1
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 1.2e-94 351.3 471 43.3
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.8e-93 347.4 466 41.8
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 2.3e-93 347.1 474 42.4
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 7.5e-92 342.0 467 43.5
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.3e-91 341.3 471 44.6
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.8e-91 340.1 461 44.9
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 6.3e-91 339.0 471 44.2
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 3.8e-88 329.7 469 42.9
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 6.5e-88 328.9 469 42.2
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 4.2e-87 326.2 469 42.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 8.8e-85 318.5 451 40.6
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 4.4e-84 316.2 469 40.9
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 7.5e-84 315.5 386 49.7
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.1e-82 311.6 487 36.8
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 3.1e-82 310.1 465 37.8
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.2e-81 308.1 397 43.3
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.0e-81 307.4 329 49.5
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.9e-81 305.8 499 37.1
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.6e-78 297.7 267 57.3
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.3e-75 288.1 463 38.9
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 1.4e-74 284.6 352 44.9
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 4.1e-74 283.1 460 35.9
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-69 267.7 391 38.1
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.9e-50 204.5 291 41.6
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.0e-48 198.7 431 29.9
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 7.4e-31 139.4 130 48.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 3.4e-20 104.0 152 44.1
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 2.7e-17 94.4 52 90.4
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 2.3e-16 91.3 53 86.8
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 2.4e-13 81.3 53 79.2
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 3.1e-13 80.9 52 75.0
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 5.9e-12 76.6 55 70.9
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 1.0e-11 75.9 53 77.4
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 9.7e-07 59.3 41 70.7
Solyc07g045560.1 Solanum lycopersicum HOM05D005756 ORTHO05D018916 1.3e-06 58.9 39 71.8
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.2e-06 58.2 131 32.8


User provided reference genes

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