Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.1e-246 856.3 450 100.0
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.5e-112 410.6 456 54.8
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.5e-110 403.3 420 60.2
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.2e-110 401.7 459 56.6
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 5.5e-102 375.6 463 54.9
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 2.5e-94 350.1 401 54.9
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 1.2e-80 304.7 424 49.8
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 2.7e-80 303.5 460 46.7
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 6.1e-77 292.4 459 45.8
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 2.6e-75 287.0 321 57.0
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 2.2e-66 257.3 354 46.6
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 3.2e-65 253.4 423 44.2
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 1.3e-63 248.1 466 41.0
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 6.6e-63 245.7 412 45.6
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 8.6e-63 245.4 478 42.5
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 3.6e-61 240.0 463 42.1
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 4.0e-60 236.5 502 38.8
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 8.9e-60 235.3 459 41.6
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.6e-59 233.8 447 41.2
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 9.8e-59 231.9 427 42.2
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.3e-58 231.5 231 57.1
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 2.9e-58 230.3 466 38.8
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.4e-57 228.0 441 40.8
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 2.4e-57 227.3 475 39.2
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 5.4e-57 226.1 403 41.7
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.7e-56 223.8 460 41.1
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 1.0e-55 221.9 448 40.0
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 6.6e-55 219.2 448 39.1
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.9e-54 217.6 449 38.8
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.5e-54 217.2 449 39.6
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 4.3e-54 216.5 470 38.5
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.2e-53 214.9 472 41.7
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 6.2e-53 212.6 478 41.0
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 2.3e-52 210.7 467 39.2
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 2.3e-52 210.7 466 38.2
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 5.2e-52 209.5 492 40.4
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.6e-51 207.2 458 38.2
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 3.4e-51 206.8 424 37.5
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 5.8e-51 206.1 480 36.7
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 5.8e-51 206.1 435 40.2
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 7.6e-51 205.7 427 40.0
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.2e-50 204.1 441 39.2
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 2.9e-50 203.8 460 38.0
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 3.7e-50 203.4 434 40.8
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 7.1e-49 199.1 465 38.1
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 2.5e-46 190.7 419 37.7
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 7.3e-46 189.1 426 39.2
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 7.3e-46 189.1 438 38.6
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 2.8e-45 187.2 454 37.4
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 8.1e-45 185.7 440 38.9
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.1e-44 185.3 456 37.9
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.4e-44 184.9 430 40.0
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 3.4e-43 180.3 471 35.2
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 5.8e-43 179.5 432 36.6
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.3e-42 178.3 437 35.9
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.7e-42 177.9 468 35.5
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 2.2e-42 177.6 466 39.1
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 1.9e-41 174.5 471 35.0
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.9e-41 174.5 480 39.0
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.2e-41 173.7 460 40.0
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 4.2e-41 173.3 444 36.9
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 9.3e-41 172.2 429 36.1
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.6e-40 171.4 442 33.0
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.1e-40 171.0 460 40.2
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 1.3e-39 168.3 258 41.5
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 1.3e-39 168.3 458 33.6
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 3.9e-39 166.8 425 37.9
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 5.1e-39 166.4 379 37.5
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 1.1e-38 165.2 480 36.0
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 1.1e-38 165.2 478 34.5
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 2.5e-38 164.1 474 35.7
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 3.3e-38 163.7 419 36.0
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 9.6e-38 162.2 429 37.8
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 1.3e-37 161.8 472 38.3
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 1.6e-37 161.4 391 38.1
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 4.8e-37 159.8 464 36.0
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 6.2e-37 159.5 467 35.1
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 6.2e-37 159.5 437 35.7
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 8.1e-37 159.1 468 36.3
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 2.4e-36 157.5 424 35.8
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 6.9e-36 156.0 433 36.0
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 2.6e-35 154.1 405 37.0
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.4e-35 153.3 418 34.9
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 3.2e-33 147.1 422 34.6
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 4.6e-32 143.3 252 38.9
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 1.7e-31 141.4 477 32.9
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 3.9e-31 140.2 425 33.2
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 3.3e-30 137.1 419 32.0
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 4.3e-30 136.7 421 33.5
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 1.1e-28 132.1 430 34.9
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 1.1e-28 132.1 448 33.5
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 1.8e-28 131.3 343 32.9
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.8e-28 131.3 296 43.6
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 2.4e-28 131.0 451 34.8
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 5.8e-27 126.3 457 32.4
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.3e-26 125.2 437 33.6
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.3e-26 125.2 443 34.3
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 2.9e-26 124.0 421 34.0
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 4.9e-26 123.2 466 31.1
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 1.1e-25 122.1 457 31.9
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.4e-25 121.7 422 30.6
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 7.1e-25 119.4 433 31.2
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 9.3e-25 119.0 424 33.3
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.3e-25 119.0 458 34.3
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 1.6e-24 118.2 289 35.6
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 2.7e-24 117.5 437 31.1
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.5e-24 117.1 458 34.3
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 1.0e-23 115.5 232 39.2
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 1.5e-22 111.7 467 33.4
Psat5g240600 Pisum sativum HOM05D006105 ORTHO05D006345 1.4e-20 105.1 264 40.2
Nn1g04330 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.8e-20 104.8 245 38.4
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 9.0e-20 102.4 218 33.9
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 7.6e-19 99.4 419 30.8
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 1.3e-18 98.6 213 36.2
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 6.5e-18 96.3 426 30.0
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 1.1e-17 95.5 307 34.9
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.8e-15 88.2 439 29.4
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 2.3e-15 87.8 437 29.5
TAR627G0886 Trochodendron aralioides HOM05D000157 ORTHO05D006345 5.1e-15 86.7 251 34.7
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 3.3e-14 84.0 365 30.4
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 3.3e-14 84.0 190 34.7
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 1.6e-13 81.6 411 27.3
PGR083G1480 Punica granatum HOM05D006105 ORTHO05D006345 3.4e-11 73.9 473 27.3
SEGI_16969 Sequoiadendron giganteum HOM05D016559 ORTHO05D019650 7.6e-11 72.8 290 30.3
Glyma.06G232800 Glycine max HOM05D006105 ORTHO05D006345 3.8e-10 70.5 294 29.9
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 3.8e-10 70.5 419 28.4
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.1e-09 68.9 288 32.3
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 9.3e-09 65.9 269 31.6
arahy.Tifrunner.gnm1.ann1.33PIHY Arachis hypogaea HOM05D009670 ORTHO05D010890 1.2e-08 65.5 283 27.6
arahy.Tifrunner.gnm1.ann1.81KKWU Arachis hypogaea HOM05D009670 ORTHO05D010890 1.2e-08 65.5 285 28.1
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.3e-07 61.2 106 40.6
ATR0602G093 Amborella trichopoda HOM05D006105 ORTHO05D006345 3.0e-07 60.8 250 30.8
MBI06_g40465_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 3.0e-07 60.8 110 40.9
MBI06_g46086_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 3.0e-07 60.8 111 41.4
CANSAT35G1552 Cannabis sativa HOM05D006105 ORTHO05D006345 1.1e-06 58.9 467 25.3
PGSC0003DMG400044967 Solanum tuberosum HOM05D016660 ORTHO05D006345 1.1e-06 58.9 157 33.1
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 1.1e-06 58.9 485 24.7
MBI06_g25724_MAGBIO Magnolia biondii HOM05D026394 ORTHO05D030051 4.3e-06 57.0 116 42.2
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 4.3e-06 57.0 428 26.9


User provided reference genes

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