Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.9e-152 541.2 292 100.0
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 1.3e-91 340.5 342 64.3
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 2.2e-83 313.2 301 64.8
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 8.3e-83 311.2 295 65.8
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.3e-79 299.3 289 61.6
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 6.8e-77 291.6 289 61.2
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 7.8e-73 278.1 296 57.1
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 7.8e-73 278.1 298 59.4
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 3.0e-72 276.2 269 63.2
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.1e-71 274.2 292 56.2
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 3.3e-71 272.7 291 59.1
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 4.3e-71 272.3 301 56.5
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 7.3e-71 271.6 284 59.2
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.7e-70 268.9 298 58.7
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.0e-69 267.7 307 56.4
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 1.8e-69 266.9 297 55.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 8.9e-69 264.6 288 60.1
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 1.5e-68 263.8 293 58.4
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 3.4e-68 262.7 251 64.5
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 3.4e-68 262.7 291 57.7
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 3.7e-67 259.2 291 58.1
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 3.7e-67 259.2 292 55.8
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 6.4e-67 258.5 280 56.4
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.1e-66 257.7 291 57.7
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.9e-66 256.9 263 59.7
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 2.4e-66 256.5 296 57.1
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 3.2e-66 256.1 298 56.4
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 4.1e-66 255.8 252 60.7
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 7.0e-66 255.0 292 56.2
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 9.2e-66 254.6 285 58.6
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 4.6e-65 252.3 287 55.4
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.3e-64 250.8 280 55.4
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.5e-63 247.3 294 58.2
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.5e-63 246.5 286 58.4
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 3.3e-63 246.1 285 54.7
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 3.3e-63 246.1 250 60.8
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 4.3e-63 245.7 296 57.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 5.6e-63 245.4 292 56.2
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 7.3e-63 245.0 282 57.1
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.1e-62 243.4 251 59.4
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 2.8e-62 243.0 296 53.0
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 8.1e-62 241.5 300 53.0
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.8e-61 240.4 302 53.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 4.0e-61 239.2 292 53.8
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 2.0e-60 236.9 230 62.2
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-60 236.9 246 56.9
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.0e-60 236.9 274 56.2
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.6e-60 236.5 296 53.4
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 5.8e-60 235.3 301 54.2
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 9.8e-60 234.6 283 54.8
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 1.7e-59 233.8 217 61.8
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 2.2e-59 233.4 283 54.1
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 3.7e-59 232.6 293 53.6
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 3.7e-59 232.6 221 66.1
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 1.1e-58 231.1 294 52.0
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 1.1e-58 231.1 295 54.9
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.1e-58 231.1 294 52.4
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 4.1e-58 229.2 293 54.3
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.2e-57 227.6 294 52.0
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.6e-57 227.3 287 53.0
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.0e-56 224.6 291 50.5
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 2.3e-56 223.4 291 50.9
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 2.3e-56 223.4 291 50.9
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.0e-56 223.0 299 52.2
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 3.0e-56 223.0 259 52.9
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.0e-56 223.0 292 51.4
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 3.0e-56 223.0 292 51.4
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 3.9e-56 222.6 296 49.7
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.9e-56 222.6 307 52.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 3.9e-56 222.6 289 53.3
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 5.1e-56 222.2 229 57.2
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 5.1e-56 222.2 291 50.5
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 5.1e-56 222.2 234 59.4
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 8.6e-56 221.5 306 52.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 2.5e-55 219.9 288 53.1
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 3.3e-55 219.5 290 52.8
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.3e-55 219.5 308 52.3
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 4.3e-55 219.2 291 49.8
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 5.6e-55 218.8 265 53.6
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 7.3e-55 218.4 233 57.5
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.8e-54 216.5 288 51.4
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 4.7e-54 215.7 282 50.7
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 4.7e-54 215.7 282 50.7
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 8.1e-54 214.9 292 50.7
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 4.0e-53 212.6 284 52.1
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.2e-53 212.2 291 52.6
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 9.9e-52 208.0 289 49.8
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 3.8e-51 206.1 233 60.1
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.9e-50 203.8 290 49.0
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 7.1e-50 201.8 236 50.8
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 9.2e-50 201.4 215 59.5
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.6e-49 200.7 215 56.3
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.8e-45 187.2 256 52.0
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 6.9e-45 185.3 283 49.5
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 2.6e-44 183.3 245 50.6
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 2.6e-44 183.3 260 47.3
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.6e-44 183.3 286 48.6
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.1e-42 177.9 200 57.5
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 2.4e-42 176.8 223 51.6
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.1e-38 163.7 297 43.8
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.2e-38 162.2 153 60.8
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 8.1e-38 161.8 274 44.5
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 6.4e-35 152.1 292 41.1
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 5.4e-34 149.1 289 39.4
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 1.6e-33 147.5 220 47.3
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 1.6e-33 147.5 270 41.9
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 6.7e-32 142.1 189 48.7
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 1.9e-31 140.6 289 39.4
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 9.6e-31 138.3 131 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 6.2e-30 135.6 239 39.7
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 2.4e-29 133.7 287 38.7
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 4.0e-29 132.9 137 59.1
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 5.8e-28 129.0 183 46.4
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 5.8e-28 129.0 183 46.4
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.3e-27 127.9 296 36.5
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.3e-24 117.9 212 39.6
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 3.9e-24 116.3 251 36.3
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 3.9e-24 116.3 161 47.2
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.9e-23 114.0 113 58.4
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 1.9e-23 114.0 140 51.4
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 7.4e-23 112.1 128 50.8
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 1.9e-18 97.4 242 36.0
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 5.5e-18 95.9 73 69.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 1.6e-17 94.4 198 35.9
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.7e-17 93.6 154 50.0
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.5e-15 87.8 215 36.7
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 8.2e-14 82.0 72 63.9
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 1.1e-13 81.6 133 48.1
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 2.4e-13 80.5 146 37.7
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 1.4e-10 71.2 60 60.0
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 2.7e-09 67.0 89 37.1
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 1.1e-07 61.6 74 50.0
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.5e-07 60.5 45 60.0
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 4.3e-07 59.7 192 32.3
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 7.4e-07 58.9 80 50.0


User provided reference genes

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