Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 7.6e-161 570.5 292 100.0
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.7e-136 489.6 295 85.1
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 3.5e-134 481.9 295 84.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 9.6e-132 473.8 295 82.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 8.2e-131 470.7 291 82.8
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 1.8e-130 469.5 296 82.1
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.2e-128 462.6 296 80.7
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 3.8e-128 461.8 295 80.7
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 6.5e-128 461.1 296 80.1
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 8.4e-128 460.7 296 80.4
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 7.2e-127 457.6 283 83.0
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-126 456.8 291 81.1
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.6e-126 456.4 295 80.7
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 6.1e-126 454.5 278 84.5
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 6.1e-126 454.5 293 78.2
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 6.1e-126 454.5 293 78.5
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 7.9e-126 454.1 293 77.8
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.8e-125 453.0 293 76.5
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.8e-125 453.0 293 76.5
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 3.9e-125 451.8 299 77.3
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 3.9e-125 451.8 290 79.0
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 6.7e-125 451.1 300 76.0
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.1e-124 450.3 293 76.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.5e-124 449.9 297 78.8
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 4.3e-124 448.4 300 76.7
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 7.4e-124 447.6 297 78.1
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.2e-123 446.0 300 75.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-122 443.4 293 79.2
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.2e-121 440.3 299 75.3
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.5e-121 439.9 291 77.0
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-120 437.2 291 76.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.2e-120 436.0 299 73.9
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 2.9e-120 435.6 298 77.5
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 5.0e-120 434.9 291 77.3
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 3.2e-119 432.2 284 79.9
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 7.9e-118 427.6 294 74.1
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.4e-117 426.8 291 77.7
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.4e-117 426.8 290 75.9
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.0e-117 425.6 295 74.9
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.1e-117 424.9 295 76.3
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 8.8e-117 424.1 286 74.5
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 8.8e-117 424.1 296 73.6
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-116 423.3 289 75.8
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.5e-116 423.3 289 75.8
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 3.3e-116 422.2 289 74.7
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 4.3e-116 421.8 295 74.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.7e-116 421.4 289 74.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.7e-116 421.4 289 74.4
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 7.4e-116 421.0 290 73.8
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 7.4e-116 421.0 290 73.8
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 7.4e-116 421.0 291 74.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.2e-115 419.5 294 73.8
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 2.2e-115 419.5 289 75.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.2e-115 419.5 289 75.4
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.7e-115 418.7 287 74.2
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.7e-115 418.7 290 74.5
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 4.8e-115 418.3 289 74.4
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 6.3e-115 417.9 287 74.2
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.3e-115 417.9 279 78.9
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-114 417.2 295 75.3
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 1.1e-114 417.2 297 73.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.4e-114 416.8 290 75.2
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 1.4e-114 416.8 287 73.9
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 1.4e-114 416.8 291 73.9
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.8e-114 416.4 286 73.4
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.4e-114 416.0 295 75.3
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.4e-114 416.0 287 73.9
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.4e-114 416.0 289 74.4
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 5.3e-114 414.8 297 73.1
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 6.9e-114 414.5 289 73.7
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 6.9e-114 414.5 282 75.2
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 6.9e-114 414.5 287 73.5
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.2e-113 413.7 293 74.4
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.2e-113 413.7 298 70.8
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.5e-113 413.3 291 73.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.0e-113 412.9 287 73.5
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 4.5e-113 411.8 291 73.5
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 4.5e-113 411.8 290 74.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 5.9e-113 411.4 292 74.7
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.7e-112 409.8 283 73.5
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.7e-112 409.8 293 72.0
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.2e-112 409.5 298 73.8
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 3.8e-112 408.7 292 73.6
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-112 408.7 291 72.9
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 3.8e-112 408.7 291 72.9
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 5.0e-112 408.3 292 73.6
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 5.0e-112 408.3 291 73.2
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 6.5e-112 407.9 292 73.6
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 6.5e-112 407.9 291 71.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.5e-112 407.5 290 72.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-111 407.1 292 74.7
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-111 407.1 292 73.3
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.1e-111 407.1 291 73.5
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.1e-111 407.1 291 72.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.4e-111 406.8 288 73.3
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.4e-111 406.8 288 73.3
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.4e-111 406.8 288 73.3
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.9e-111 406.4 291 72.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.9e-111 406.4 291 71.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.5e-111 406.0 288 72.9
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.5e-111 406.0 288 72.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.2e-111 405.2 282 72.3
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 5.5e-111 404.8 288 72.9
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 5.5e-111 404.8 288 72.6
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 5.5e-111 404.8 288 72.6
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 7.2e-111 404.4 288 73.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 7.2e-111 404.4 288 72.6
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 7.2e-111 404.4 291 71.5
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 7.2e-111 404.4 291 73.2
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 9.4e-111 404.1 293 71.7
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-110 403.7 289 72.3
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 1.6e-110 403.3 288 72.6
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.6e-110 403.3 282 73.0
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.1e-110 402.9 288 72.9
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 3.6e-110 402.1 288 72.2
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 3.6e-110 402.1 288 72.2
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 3.6e-110 402.1 288 72.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.6e-110 402.1 290 73.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 7.9e-110 401.0 292 71.6
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 7.9e-110 401.0 290 71.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 7.9e-110 401.0 292 71.6
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.5e-108 396.7 282 73.0
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 5.7e-108 394.8 282 72.7
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 5.7e-108 394.8 293 69.3
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 7.4e-108 394.4 280 73.2
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.7e-107 393.3 297 70.7
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.7e-107 393.3 284 73.9
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.2e-107 392.9 293 71.0
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.1e-106 390.6 287 72.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.4e-106 390.2 282 72.0
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 4.5e-105 385.2 307 66.8
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 8.0e-102 374.4 306 66.0
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.4e-101 373.6 306 65.7
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.4e-101 373.6 291 69.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.8e-101 373.2 310 63.9
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-101 373.2 283 66.8
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 3.3e-100 369.0 296 68.6
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.8e-99 365.9 296 67.6
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.1e-98 360.9 245 76.3
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.5e-97 358.6 295 67.8
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.9e-97 358.2 295 66.8
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 6.8e-93 344.7 295 64.4
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 5.4e-90 335.1 260 65.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 3.2e-87 325.9 293 61.8
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 1.2e-81 307.4 278 58.3
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 7.7e-81 304.7 192 82.3
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.7e-73 279.6 214 71.5
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 2.5e-71 273.1 277 53.1
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 5.8e-68 261.9 280 51.1
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.5e-65 252.7 276 52.9
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.1e-61 241.1 281 49.5
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.7e-59 233.8 265 51.7
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 2.4e-58 229.9 164 72.0
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 9.2e-58 228.0 143 78.3
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 4.9e-51 205.7 131 77.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 6.4e-51 205.3 142 73.2
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 3.3e-47 193.0 152 63.2
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 3.5e-25 119.8 332 29.5
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 6.0e-25 119.0 112 62.5
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 3.9e-24 116.3 99 62.6
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 7.4e-23 112.1 86 65.1
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 3.7e-22 109.8 112 59.8
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.9e-19 100.1 98 63.3
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 2.8e-14 83.6 71 57.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 3.6e-09 66.6 72 58.3
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 6.1e-09 65.9 85 55.3
Ca_04590_v3 Cicer arietinum L. HOM05D005748 ORTHO05D007123 1.3e-06 58.2 128 31.2
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 2.2e-06 57.4 130 32.3
PSO478G3396 Papaver somniferum HOM05D005748 ORTHO05D007123 2.8e-06 57.0 130 36.9
DCAR_021512 Daucus carota HOM05D005748 ORTHO05D007123 6.3e-06 55.8 136 31.6


User provided reference genes

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