Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 0.0e+00 2601.2 1340 100.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 3.2e-299 1032.3 1404 48.6
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.5e-284 981.5 1483 45.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-245 854.0 1555 41.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.3e-239 834.3 1515 40.2
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 9.7e-203 711.8 1518 37.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-186 658.3 1403 38.3
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.2e-125 455.7 809 41.7
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.8e-124 451.8 1471 31.5
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.1e-119 433.7 1463 32.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.3e-111 409.1 1554 29.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 5.4e-105 387.1 1607 27.8
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.9e-102 378.6 1450 29.9
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.5e-102 378.3 1585 28.2
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.8e-99 367.1 504 50.0
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.5e-98 363.6 1617 27.6
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.6e-96 357.5 1569 28.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 5.1e-95 354.0 1444 28.3
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.8e-93 348.2 1635 27.3
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 2.2e-85 322.0 1363 28.0
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.1e-79 300.8 937 31.4
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 6.7e-79 300.4 1495 27.2
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 8.8e-79 300.1 1472 27.8
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 5.3e-76 290.8 1389 28.4
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.9e-76 290.4 1343 26.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 9.1e-76 290.0 907 31.8
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.2e-75 289.7 1443 26.3
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.5e-75 287.7 727 35.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.7e-74 285.8 789 33.8
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.2e-73 281.6 1376 27.3
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 7.9e-72 276.9 739 34.4
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 1.1e-70 273.1 912 32.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.2e-69 266.9 1445 27.1
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.8e-68 265.8 1316 27.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 3.1e-68 265.0 830 32.2
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 2.0e-67 262.3 1425 26.9
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 5.9e-67 260.8 830 31.8
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 6.5e-66 257.3 866 30.8
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.5e-65 255.4 1515 27.0
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 5.5e-65 254.2 1552 25.5
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.6e-64 252.7 1300 27.2
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.7e-64 251.9 623 36.9
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.0e-63 250.0 1534 25.4
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 4.0e-63 248.1 1330 25.9
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 9.7e-62 243.4 1458 26.3
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.4e-60 238.8 1471 25.5
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.2e-58 232.3 1378 26.5
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.9e-57 229.2 565 36.1
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.2e-56 226.5 688 32.8
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 3.0e-55 221.9 766 30.8
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 4.0e-55 221.5 607 34.6
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.5e-54 219.5 619 33.4
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.5e-54 219.5 1553 25.0
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.0e-54 219.2 651 33.6
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.4e-54 218.4 576 34.9
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 4.8e-53 214.5 1487 25.4
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.4e-52 212.2 634 33.3
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.1e-52 210.3 443 38.8
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-51 209.5 632 33.1
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.0e-51 209.1 1550 24.1
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.9e-50 205.3 1439 25.1
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.1e-49 203.4 1406 24.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.6e-48 198.4 629 33.1
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.6e-48 198.4 278 49.3
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.7e-48 198.0 1547 24.6
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.3e-47 195.7 1449 24.8
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.2e-47 194.5 612 32.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 6.8e-47 194.1 554 34.5
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.8e-47 194.1 612 32.5
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 8.8e-47 193.7 690 31.3
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 9.8e-46 190.3 1391 24.4
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.8e-44 186.0 1457 24.6
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.4e-44 185.7 657 30.4
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.6e-43 183.0 236 52.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.5e-43 181.8 657 30.1
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.5e-43 181.8 404 38.9
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.3e-42 179.9 496 35.5
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.3e-42 179.1 1395 24.7
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.0e-42 177.9 1448 24.3
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.1e-41 176.8 1472 23.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.1e-40 172.6 1454 25.0
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.8e-40 172.2 1388 25.7
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 4.7e-40 171.4 1354 23.3
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 6.1e-40 171.0 1468 22.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.0e-39 170.2 1436 24.0
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 2.0e-38 166.0 252 48.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 4.4e-38 164.9 1430 24.5
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.2e-37 162.5 1493 22.8
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.8e-36 159.5 609 30.2
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.8e-36 159.5 1453 23.7
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 2.4e-36 159.1 260 46.2
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 9.2e-36 157.1 418 36.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.5e-35 155.2 1271 24.0
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 4.6e-35 154.8 386 36.3
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.9e-34 152.1 413 36.8
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.5e-33 149.8 620 30.2
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.5e-33 149.1 426 33.6
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.3e-33 148.7 1410 23.5
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.4e-31 143.3 412 33.7
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 3.4e-30 138.7 591 29.4
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 2.2e-29 136.0 425 34.8
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.9e-29 135.6 422 33.9
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 2.4e-28 132.5 932 23.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.2e-28 132.1 225 36.9
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 9.2e-28 130.6 422 34.1
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.2e-27 130.2 430 33.5
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.0e-26 127.1 207 37.2
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.0e-26 127.1 1393 23.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.3e-26 126.7 410 32.9
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 5.0e-26 124.8 413 32.9
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.9e-25 122.9 1411 23.6
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.6e-22 112.5 1415 23.0
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 4.4e-22 111.7 426 31.2
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 4.4e-22 111.7 426 31.2
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 2.9e-21 109.0 426 30.0
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 2.9e-21 109.0 426 30.0
Actinidia30400 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.9e-21 108.2 151 43.7
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.9e-20 106.3 435 30.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 1.9e-20 106.3 1417 21.7
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.2e-20 104.0 67 70.1
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.5e-17 95.9 160 39.4
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 5.6e-17 94.7 160 39.4
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 3.6e-16 92.0 236 31.8
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.1e-15 89.0 302 32.5
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.0e-15 88.6 78 62.8
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 4.9e-13 81.6 69 55.1
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 4.9e-13 81.6 60 63.3
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.1e-12 80.5 374 26.5
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.1e-12 78.6 230 28.7
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 9.2e-12 77.4 308 25.6
vmacro09649 Vaccinium macrocarpon HOM05D000835 ORTHO05D002122 9.2e-12 77.4 88 55.7
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.5e-11 75.5 293 25.6
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.0e-10 73.9 57 57.9
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 6.6e-10 71.2 69 44.9
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 6.6e-10 71.2 58 53.4
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 6.6e-10 71.2 283 30.7
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.3e-09 68.9 271 31.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 2.1e-08 66.2 257 31.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.4e-07 62.8 57 59.6
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 5.2e-07 61.6 292 31.8
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 8.9e-07 60.8 60 50.0
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 9.9e-06 57.4 58 48.3


User provided reference genes

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