Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-101 372.9 185 100.0
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.4e-88 329.7 207 81.2
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.8e-83 312.8 205 76.1
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.8e-81 305.1 205 74.6
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.9e-80 302.8 205 73.7
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.9e-80 302.8 204 75.0
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.2e-79 300.1 206 72.3
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 6.0e-79 297.7 205 71.7
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 7.8e-79 297.4 206 72.3
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.5e-77 293.1 205 70.2
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.5e-77 293.1 205 71.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 2.5e-77 292.4 204 71.1
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 3.3e-77 292.0 204 70.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 7.3e-77 290.8 205 70.2
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 9.6e-77 290.4 205 70.7
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 4.8e-76 288.1 205 69.8
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 6.2e-76 287.7 205 68.8
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.1e-75 287.0 205 69.3
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 1.4e-75 286.6 204 69.1
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 3.1e-75 285.4 205 68.3
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 3.1e-75 285.4 205 68.3
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 5.3e-75 284.6 205 67.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 5.3e-75 284.6 203 68.5
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 9.0e-75 283.9 205 68.3
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 9.0e-75 283.9 205 69.8
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.0e-75 283.9 205 69.8
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 9.0e-75 283.9 207 66.7
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.6e-74 282.3 203 68.0
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.6e-74 282.3 205 69.8
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.8e-74 281.2 205 67.8
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.3e-73 280.0 206 69.9
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.7e-73 279.6 205 68.8
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 2.2e-73 279.3 227 63.0
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 2.2e-73 279.3 205 69.8
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 2.2e-73 279.3 204 67.2
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.2e-73 279.3 206 69.4
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.9e-73 278.9 205 67.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 6.4e-73 277.7 205 67.3
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.1e-72 276.9 205 67.3
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.4e-72 275.8 205 66.8
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.4e-72 275.8 205 66.8
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 4.2e-72 275.0 205 65.4
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 5.4e-72 274.6 205 68.3
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.4e-72 274.6 205 68.8
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 5.4e-72 274.6 206 68.0
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 7.1e-72 274.2 204 69.1
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 7.1e-72 274.2 204 67.2
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.2e-71 273.5 204 66.7
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.1e-71 272.7 206 68.9
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 2.1e-71 272.7 203 65.0
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.7e-71 272.3 207 69.1
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-71 271.9 203 64.0
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 3.5e-71 271.9 203 64.5
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 3.5e-71 271.9 203 64.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.5e-71 271.9 204 66.7
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 4.6e-71 271.6 206 64.1
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.0e-70 270.4 205 67.3
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.0e-70 270.4 206 67.5
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.3e-70 270.0 203 63.5
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.3e-70 270.0 202 65.8
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.8e-70 269.6 205 65.9
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.3e-70 269.2 203 63.1
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.3e-70 269.2 206 67.5
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.0e-70 268.9 203 63.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 3.0e-70 268.9 206 63.6
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 3.0e-70 268.9 206 67.0
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 8.7e-70 267.3 201 66.2
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 8.7e-70 267.3 202 66.8
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 63.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 62.1
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 62.1
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 63.5
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.5e-69 266.5 205 64.4
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.9e-69 266.2 203 63.1
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.9e-69 266.2 203 63.5
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 3.3e-69 265.4 202 64.9
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 3.3e-69 265.4 202 64.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 4.3e-69 265.0 203 67.5
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 4.3e-69 265.0 203 63.1
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.6e-69 264.6 203 63.5
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.6e-69 264.6 203 63.5
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.6e-69 264.6 203 63.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 7.4e-69 264.2 203 63.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 7.4e-69 264.2 207 66.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 7.4e-69 264.2 202 63.9
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 1.3e-68 263.5 202 63.9
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 1.6e-68 263.1 202 62.9
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.1e-68 262.7 203 64.0
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.1e-68 262.7 203 63.1
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.6e-68 261.9 202 64.4
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 6.2e-68 261.2 201 64.2
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 8.1e-68 260.8 207 64.7
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.1e-67 260.4 203 62.6
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.4e-67 260.0 193 66.3
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 1.4e-67 260.0 202 62.9
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.0e-67 258.5 202 63.9
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 4.0e-67 258.5 201 64.7
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.9e-67 257.7 213 60.1
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 6.9e-67 257.7 205 65.4
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 6.9e-67 257.7 203 65.0
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 9.0e-67 257.3 201 63.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.2e-66 256.9 209 61.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.2e-66 256.9 202 63.4
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.2e-66 256.9 196 64.3
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 2.0e-66 256.1 257 54.5
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 2.6e-66 255.8 205 62.4
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.5e-66 255.0 204 65.7
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 5.8e-66 254.6 205 65.9
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.2e-65 252.7 205 61.0
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.9e-65 252.3 205 64.9
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 8.4e-65 250.8 195 64.1
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 9.3e-64 247.3 203 62.6
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.1e-61 240.4 203 61.6
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.3e-61 238.8 203 60.6
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.4e-59 232.6 204 55.4
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.4e-59 232.6 207 56.0
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 8.4e-57 224.2 206 55.8
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.7e-55 219.2 193 58.5
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 6.0e-55 218.0 208 53.4
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.4e-51 206.1 185 58.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 2.7e-47 192.6 214 48.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.3e-45 185.3 145 67.6
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 4.8e-44 181.8 146 63.7
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 6.9e-43 177.9 210 45.7
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.5e-42 176.8 140 65.7
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.5e-42 176.8 210 46.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.9e-41 172.6 148 59.5
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.5e-40 169.5 142 63.4
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.1e-37 160.6 149 59.7
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.8e-36 155.2 120 65.8
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 1.2e-34 150.6 206 41.7
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-31 140.2 168 50.6
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 7.4e-29 131.3 128 53.1
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.6e-26 123.6 135 51.9
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 2.2e-25 119.8 99 61.6
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.2e-25 119.8 66 84.8
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 1.6e-18 97.1 62 71.0
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.0e-18 96.7 62 67.7
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 3.5e-18 95.9 189 35.4
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.5e-18 95.5 55 87.3
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-18 95.1 50 94.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-18 95.1 50 94.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 7.7e-18 94.7 193 31.6
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 9.4e-16 87.8 200 32.0
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 8.0e-15 84.7 50 78.0
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.8e-14 83.6 44 93.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 2.0e-13 80.1 128 36.7
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 9.1e-11 71.2 53 60.4
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.3e-09 66.6 43 67.4
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 9.5e-08 61.2 34 85.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.6e-07 60.5 100 33.0
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 3.6e-07 59.3 81 42.0


User provided reference genes

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