Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0007900 Rhododendron simsii HOM05D000299 ORTHO05D000079 6.5e-78 293.9 139 100.0
Rhsim01G0135800 Rhododendron simsii HOM05D000299 ORTHO05D000079 3.2e-32 142.1 170 49.4
CiPaw.13G031100 Carya illinoinensis HOM05D000299 ORTHO05D000079 1.2e-18 97.1 164 40.2
Haze_02725 Corylus avellana HOM05D000299 ORTHO05D000079 3.8e-17 92.0 161 42.9
GSVIVG01018180001 Vitis vinifera HOM05D000299 ORTHO05D000079 4.9e-17 91.7 165 38.8
Actinidia12176 Actinidia chinensis HOM05D000299 ORTHO05D000079 1.4e-16 90.1 168 39.3
Actinidia22771 Actinidia chinensis HOM05D000299 ORTHO05D000079 7.1e-16 87.8 168 39.3
Actinidia22826 Actinidia chinensis HOM05D000299 ORTHO05D000079 7.1e-16 87.8 168 39.3
A07p25140 Brassica napus HOM05D000299 ORTHO05D000079 9.3e-16 87.4 169 35.5
BraA07t30156Z Brassica rapa HOM05D000299 ORTHO05D000079 9.3e-16 87.4 169 35.5
Dinv44109 Davidia involucrata HOM05D000299 ORTHO05D000079 9.3e-16 87.4 124 43.5
Manes.05G050300 Manihot esculenta HOM05D000299 ORTHO05D000079 1.6e-15 86.7 170 37.1
Thecc.01G385800 Theobroma cacao HOM05D000299 ORTHO05D000079 2.1e-15 86.3 172 36.6
C08p35510 Brassica napus HOM05D000299 ORTHO05D000079 2.7e-15 85.9 163 37.4
BraA09t40710Z Brassica rapa HOM05D000299 ORTHO05D000079 2.7e-15 85.9 163 37.4
AT3G60530 Arabidopsis thaliana HOM05D000299 ORTHO05D000079 3.5e-15 85.5 164 36.6
C06p26810 Brassica napus HOM05D000299 ORTHO05D000079 4.6e-15 85.1 167 35.9
BolC6t37856H Brassica oleracea HOM05D000299 ORTHO05D000079 4.6e-15 85.1 167 35.9
Lj7A539T15 Lonicera japonica HOM05D000299 ORTHO05D000079 4.6e-15 85.1 162 37.7
Sabra14G0042800 Salix brachista HOM05D000299 ORTHO05D000079 6.0e-15 84.7 164 37.2
BcaC07g40573 Brassica carinata HOM05D000299 ORTHO05D000079 7.8e-15 84.3 163 36.8
CSS0005621 Camellia sinensis var. sinensis HOM05D000299 ORTHO05D000079 7.8e-15 84.3 176 36.9
Lsat_1_v5_gn_3_128781 Lactuca sativa HOM05D000299 ORTHO05D000079 7.8e-15 84.3 122 43.4
Sp5g02690 Schrenkiella parvula HOM05D000299 ORTHO05D000079 7.8e-15 84.3 173 35.3
BcaC07g40574 Brassica carinata HOM05D000299 ORTHO05D000079 1.0e-14 84.0 167 36.5
BcaC07g40575 Brassica carinata HOM05D000299 ORTHO05D000079 1.0e-14 84.0 167 36.5
BcaC07g40577 Brassica carinata HOM05D000299 ORTHO05D000079 1.0e-14 84.0 167 36.5
A09p52780 Brassica napus HOM05D000299 ORTHO05D000079 1.3e-14 83.6 163 35.0
Cfa011136 Carpinus fangiana HOM05D000299 ORTHO05D000079 1.7e-14 83.2 161 42.2
Solyc01g090760.4 Solanum lycopersicum HOM05D000299 ORTHO05D000079 1.7e-14 83.2 173 34.7
BolC8t51143H Brassica oleracea HOM05D000299 ORTHO05D000079 2.3e-14 82.8 163 36.2
CARHR170930 Cardamine hirsuta HOM05D000299 ORTHO05D000079 3.0e-14 82.4 173 35.3
Sopen01g036490 Solanum pennellii HOM05D000299 ORTHO05D000079 3.0e-14 82.4 173 34.7
PGSC0003DMG400026025 Solanum tuberosum HOM05D000299 ORTHO05D000079 3.0e-14 82.4 173 34.7
Cpa.g.sc941.1 Carica papaya HOM05D000299 ORTHO05D000079 3.9e-14 82.0 158 38.6
COL.COLO4_12467 Corchorus olitorius HOM05D000299 ORTHO05D000079 3.9e-14 82.0 185 37.3
AL5G42830 Arabidopsis lyrata HOM05D000299 ORTHO05D000079 5.1e-14 81.6 173 34.7
Thhalv10006202m.g Eutrema salsugineum HOM05D000299 ORTHO05D000079 5.1e-14 81.6 171 35.1
Duzib138G0809 Durio zibethinus HOM05D000299 ORTHO05D000079 1.5e-13 80.1 174 37.4
Lsat_1_v5_gn_7_10301 Lactuca sativa HOM05D000299 ORTHO05D000079 1.9e-13 79.7 107 47.7
Potri.002G142800 Populus trichocarpa HOM05D000299 ORTHO05D000079 4.3e-13 78.6 166 33.7
Peaxi162Scf00350g00013 Petunia axillaris HOM05D000299 ORTHO05D000079 5.6e-13 78.2 190 32.1
Prupe.2G135400 Prunus persica HOM05D000299 ORTHO05D000079 5.6e-13 78.2 149 40.9
ECA240G4541 Erigeron canadensis HOM05D000299 ORTHO05D000079 7.3e-13 77.8 116 39.7
Sabra02G0111300 Salix brachista HOM05D000299 ORTHO05D000079 9.6e-13 77.4 167 34.1
TWI59G0482 Tripterygium wilfordii HOM05D000299 ORTHO05D000079 9.6e-13 77.4 151 37.1
Nitab4.5_0001501g0040 Nicotiana tabacum HOM05D000299 ORTHO05D000079 1.3e-12 77.0 188 35.1
HanXRQChr13g0422871 Helianthus annuus HOM05D000299 ORTHO05D000079 1.6e-12 76.6 98 48.0
QL04p035839 Quercus lobata HOM05D000299 ORTHO05D000079 2.1e-12 76.3 163 34.4
Aa31LG10G14810 Aethionema arabicum HOM05D000299 ORTHO05D000079 2.8e-12 75.9 181 33.1
TAR374G0027 Trochodendron aralioides HOM05D000299 ORTHO05D000079 2.8e-12 75.9 183 32.8
PGSC0003DMG400011765 Solanum tuberosum HOM05D000299 ORTHO05D000079 4.8e-12 75.1 176 33.0
Dinv43658 Davidia involucrata HOM05D000299 ORTHO05D000079 6.2e-12 74.7 188 31.9
THA.LOC104802475 Tarenaya hassleriana HOM05D000299 ORTHO05D000079 1.4e-11 73.6 163 36.2
TAR375G0882 Trochodendron aralioides HOM05D000299 ORTHO05D000079 1.4e-11 73.6 180 34.4
BcaB02g07409 Brassica carinata HOM05D000299 ORTHO05D000079 2.4e-11 72.8 103 41.7
Carub.0005s2727 Capsella rubella HOM05D000299 ORTHO05D000079 2.4e-11 72.8 107 40.2
Ciclev10021733m.g Citrus clementina HOM05D000299 ORTHO05D000079 3.1e-11 72.4 163 35.6
HanXRQChr06g0168981 Helianthus annuus HOM05D000299 ORTHO05D000079 3.1e-11 72.4 113 44.2
Nitab4.5_0000882g0030 Nicotiana tabacum HOM05D000299 ORTHO05D000079 3.1e-11 72.4 190 32.1
BraA05t19488Z Brassica rapa HOM05D000299 ORTHO05D000079 6.9e-11 71.2 173 31.2
MSTRG.17154 Avicennia marina HOM05D000299 ORTHO05D000079 9.0e-11 70.9 133 36.1
CARHR140300 Cardamine hirsuta HOM05D000299 ORTHO05D000079 1.2e-10 70.5 176 32.4
MBI04_g09511_MAGBIO Magnolia biondii HOM05D000299 ORTHO05D000079 2.0e-10 69.7 178 33.1
BcaC08g45072 Brassica carinata HOM05D000299 ORTHO05D000079 3.4e-10 68.9 144 34.7
THA.LOC104817212 Tarenaya hassleriana HOM05D000299 ORTHO05D000079 4.4e-10 68.6 182 34.6
MD07G1112200 Malus domestica HOM05D000299 ORTHO05D000079 7.6e-10 67.8 155 34.8
CANSAT21G1363 Cannabis sativa HOM05D000299 ORTHO05D000079 9.9e-10 67.4 174 33.3
Gohir.D08G158500 Gossypium hirsutum HOM05D000299 ORTHO05D000079 1.7e-09 66.6 170 33.5
Gorai.004G164700 Gossypium raimondii HOM05D000299 ORTHO05D000079 1.7e-09 66.6 170 33.5
Aqoxy7G00780 Aquilegia oxysepala HOM05D000299 ORTHO05D000079 2.9e-09 65.9 183 31.1
Nitab4.5_0002304g0070 Nicotiana tabacum HOM05D000299 ORTHO05D000079 2.9e-09 65.9 187 30.5
TWI14G0510 Tripterygium wilfordii HOM05D000299 ORTHO05D000079 3.8e-09 65.5 156 32.1
CAN.G899.14 Capsicum annuum HOM05D000299 ORTHO05D000079 4.9e-09 65.1 170 31.8
Gohir.A08G137400 Gossypium hirsutum HOM05D000299 ORTHO05D000079 4.9e-09 65.1 107 42.1
Peaxi162Scf00377g00043 Petunia axillaris HOM05D000299 ORTHO05D000079 4.9e-09 65.1 104 40.4
Potri.014G058600 Populus trichocarpa HOM05D000299 ORTHO05D000079 4.9e-09 65.1 168 32.1
Atru.chr5.217 Acer truncatum HOM05D000299 ORTHO05D000079 8.4e-09 64.3 179 30.2
ECA236G2011 Erigeron canadensis HOM05D000299 ORTHO05D000079 1.1e-08 63.9 107 41.1
Oeu009619.1 Olea europaea HOM05D000299 ORTHO05D000079 1.1e-08 63.9 153 33.3
BcaC02g12255 Brassica carinata HOM05D000299 ORTHO05D000079 1.4e-08 63.5 174 29.9
A05p05140 Brassica napus HOM05D000299 ORTHO05D000079 1.4e-08 63.5 174 29.9
C04p05990 Brassica napus HOM05D000299 ORTHO05D000079 1.4e-08 63.5 174 29.9
ATR0317G015 Amborella trichopoda HOM05D000299 ORTHO05D000079 1.9e-08 63.2 183 30.6
FAN10G2976 Fragaria x ananassa HOM05D000299 ORTHO05D000079 1.9e-08 63.2 145 34.5
SalBow5G0076 Salvia bowleyana HOM05D000299 ORTHO05D000079 1.9e-08 63.2 95 40.0
BcaC02g12256 Brassica carinata HOM05D000299 ORTHO05D000079 2.4e-08 62.8 173 30.1
C04p71370 Brassica napus HOM05D000299 ORTHO05D000079 3.2e-08 62.4 174 31.0
Thhalv10001591m.g Eutrema salsugineum HOM05D000299 ORTHO05D000079 3.2e-08 62.4 170 30.6
RcHm_v2.0_Chr1g0348681 Rosa chinensis HOM05D000299 ORTHO05D000079 3.2e-08 62.4 147 33.3
Solyc10g018560.2 Solanum lycopersicum HOM05D000299 ORTHO05D000079 4.2e-08 62.0 116 36.2
AL4G44140 Arabidopsis lyrata HOM05D000299 ORTHO05D000079 5.4e-08 61.6 182 30.2
AT2G45050 Arabidopsis thaliana HOM05D000299 ORTHO05D000079 5.4e-08 61.6 184 29.9
BcaC02g07130 Brassica carinata HOM05D000299 ORTHO05D000079 5.4e-08 61.6 174 31.0
BolC4t28642H Brassica oleracea HOM05D000299 ORTHO05D000079 5.4e-08 61.6 174 31.0
FAN06G1629 Fragaria x ananassa HOM05D000299 ORTHO05D000079 5.4e-08 61.6 145 34.5
FAN06G3335 Fragaria x ananassa HOM05D000299 ORTHO05D000079 5.4e-08 61.6 145 34.5
Glyma.07G108900 Glycine max HOM05D000299 ORTHO05D000079 5.4e-08 61.6 146 34.9
Sopen10g008320 Solanum pennellii HOM05D000299 ORTHO05D000079 5.4e-08 61.6 116 36.2
FAN10G4288 Fragaria x ananassa HOM05D000299 ORTHO05D000079 7.1e-08 61.2 148 31.8
FvH4_7g10740 Fragaria vesca HOM05D000299 ORTHO05D000079 9.3e-08 60.8 145 34.5
FAN01G2987 Fragaria x ananassa HOM05D000299 ORTHO05D000079 9.3e-08 60.8 145 33.1
Aa31LG1G26630 Aethionema arabicum HOM05D000299 ORTHO05D000079 2.7e-07 59.3 123 37.4
Gohir.D03G059000 Gossypium hirsutum HOM05D000299 ORTHO05D000079 3.5e-07 58.9 181 28.7
Gorai.003G062900 Gossypium raimondii HOM05D000299 ORTHO05D000079 3.5e-07 58.9 181 28.7
BcaB02g08959 Brassica carinata HOM05D000299 ORTHO05D000079 4.6e-07 58.5 184 28.3
COL.COLO4_30487 Corchorus olitorius HOM05D000299 ORTHO05D000079 4.6e-07 58.5 194 28.9
Migut.B01577 Erythranthe guttata HOM05D000299 ORTHO05D000079 4.6e-07 58.5 107 36.4
BcaNung06150 Brassica carinata HOM05D000299 ORTHO05D000079 6.0e-07 58.2 163 32.5
PGR042G3328 Punica granatum HOM05D000299 ORTHO05D000079 7.9e-07 57.8 92 39.1
SGA_v2.0_scaffold153G36957 Striga asiatica HOM05D001670 ORTHO05D002980 7.9e-07 57.8 97 33.0
A04p33600 Brassica napus HOM05D000299 ORTHO05D000079 1.0e-06 57.4 175 29.1
BraA04t18823Z Brassica rapa HOM05D000299 ORTHO05D000079 1.0e-06 57.4 175 29.1
Gohir.A02G118400 Gossypium hirsutum HOM05D000299 ORTHO05D000079 1.0e-06 57.4 181 28.7
SGA_v2.0_scaffold399G50815 Striga asiatica HOM05D000299 ORTHO05D000079 1.0e-06 57.4 147 29.3
SGA_v2.0_scaffold569G52964 Striga asiatica HOM05D000299 ORTHO05D000079 1.0e-06 57.4 102 37.3
Actinidia32705 Actinidia chinensis HOM05D000299 ORTHO05D000079 2.3e-06 56.2 140 32.1
Lj3g0022206 Lotus japonicus HOM05D000299 ORTHO05D000079 2.3e-06 56.2 138 35.5
Carub.0004s2764 Capsella rubella HOM05D000299 ORTHO05D000079 3.0e-06 55.8 120 34.2
Sed0011351 Sechium edule HOM05D000299 ORTHO05D000079 3.9e-06 55.5 100 34.0
Thecc.06G097700 Theobroma cacao HOM05D000299 ORTHO05D000079 3.9e-06 55.5 188 28.7
Sed0028094 Sechium edule HOM05D000299 ORTHO05D000079 6.6e-06 54.7 176 27.8
MELO3C024448.2 Cucumis melo HOM05D000299 ORTHO05D000079 8.7e-06 54.3 212 27.8
SGA_v2.0_scaffold69G23325 Striga asiatica HOM05D000299 ORTHO05D000079 8.7e-06 54.3 114 32.5


User provided reference genes

Program Settings