Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 3.7e-76 288.1 145 100.0
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 5.6e-56 221.1 148 79.1
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.6e-55 219.5 148 78.4
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.1e-54 216.9 148 77.0
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.4e-54 216.5 168 71.4
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 1.8e-54 216.1 152 77.6
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 3.1e-54 215.3 144 75.0
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 8.9e-54 213.8 144 75.0
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 1.5e-53 213.0 151 76.8
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.5e-53 213.0 149 75.2
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.6e-53 212.2 151 77.5
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 3.4e-53 211.8 151 75.5
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 3.4e-53 211.8 160 72.5
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 4.4e-53 211.5 151 75.5
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 4.4e-53 211.5 148 75.7
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 5.8e-53 211.1 150 76.0
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 5.8e-53 211.1 148 75.7
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 7.6e-53 210.7 149 76.5
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 7.6e-53 210.7 158 72.8
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 9.9e-53 210.3 148 75.0
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 9.9e-53 210.3 148 74.3
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.3e-52 209.9 145 77.2
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 2.9e-52 208.8 155 72.9
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 4.9e-52 208.0 148 76.4
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 8.4e-52 207.2 132 79.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 1.1e-51 206.8 153 73.2
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.9e-51 206.1 139 76.3
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 2.4e-51 205.7 108 91.7
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 3.2e-51 205.3 132 78.8
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 4.1e-51 204.9 155 69.7
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 7.1e-51 204.1 153 72.5
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 7.1e-51 204.1 153 72.5
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 7.1e-51 204.1 135 74.8
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 1.6e-50 203.0 135 77.0
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.1e-50 202.6 137 75.9
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 2.1e-50 202.6 135 75.6
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 2.7e-50 202.2 135 74.8
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 3.5e-50 201.8 164 65.2
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 3.5e-50 201.8 141 78.7
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 6.0e-50 201.1 136 77.2
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 7.8e-50 200.7 164 67.1
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 7.8e-50 200.7 165 67.9
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 7.8e-50 200.7 162 68.5
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.0e-49 200.3 164 64.6
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 1.3e-49 199.9 135 74.1
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 1.3e-49 199.9 137 77.4
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 1.3e-49 199.9 135 74.1
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.7e-49 199.5 138 76.8
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 3.0e-49 198.7 151 69.5
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 3.0e-49 198.7 138 73.2
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.0e-49 198.7 142 73.9
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 3.9e-49 198.4 150 70.7
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 5.1e-49 198.0 138 73.2
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 6.6e-49 197.6 137 75.9
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 6.6e-49 197.6 158 70.9
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 6.6e-49 197.6 158 70.9
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 6.6e-49 197.6 138 73.2
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 8.7e-49 197.2 135 73.3
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 8.7e-49 197.2 135 73.3
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 8.7e-49 197.2 135 73.3
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 8.7e-49 197.2 142 73.9
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 8.7e-49 197.2 138 75.4
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 1.5e-48 196.4 158 66.5
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.5e-48 196.4 138 73.9
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.5e-48 196.4 141 70.9
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.9e-48 196.1 135 74.1
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 3.3e-48 195.3 118 84.7
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 3.3e-48 195.3 112 86.6
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 4.3e-48 194.9 138 73.9
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 5.6e-48 194.5 127 81.9
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 5.6e-48 194.5 155 69.7
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 7.3e-48 194.1 120 82.5
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 7.3e-48 194.1 136 72.8
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 7.3e-48 194.1 111 87.4
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 1.2e-47 193.4 135 73.3
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 1.2e-47 193.4 135 73.3
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.8e-47 192.2 138 73.9
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 2.8e-47 192.2 135 74.8
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 3.6e-47 191.8 152 69.1
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 4.7e-47 191.4 117 83.8
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 4.7e-47 191.4 124 79.0
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 6.2e-47 191.0 102 92.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 8.1e-47 190.7 136 73.5
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 8.1e-47 190.7 155 68.4
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 8.1e-47 190.7 137 73.7
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 8.1e-47 190.7 155 68.4
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 8.1e-47 190.7 136 73.5
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 8.1e-47 190.7 155 68.4
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 8.1e-47 190.7 135 74.1
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.1e-46 190.3 166 65.1
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.1e-46 190.3 134 76.1
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 1.1e-46 190.3 125 78.4
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 1.4e-46 189.9 136 72.8
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 1.4e-46 189.9 136 72.8
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.8e-46 189.5 123 79.7
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.8e-46 189.5 123 79.7
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 2.4e-46 189.1 140 72.1
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 2.4e-46 189.1 101 92.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 3.1e-46 188.7 106 88.7
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 3.1e-46 188.7 136 72.8
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 3.1e-46 188.7 158 65.2
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 4.0e-46 188.3 138 72.5
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.0e-46 188.3 142 71.8
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.0e-46 188.3 152 68.4
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 6.9e-46 187.6 134 73.1
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 9.0e-46 187.2 121 77.7
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 1.2e-45 186.8 145 68.3
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 5.8e-45 184.5 107 86.0
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 7.6e-45 184.1 149 69.8
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 1.3e-44 183.3 127 73.2
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.7e-44 183.0 144 66.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.9e-43 179.5 149 66.4
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 3.2e-43 178.7 154 64.3
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 7.1e-43 177.6 144 63.9
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 6.4e-36 154.5 97 73.2
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.4e-35 153.3 114 60.5
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 7.1e-35 151.0 121 59.5
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 1.0e-33 147.1 94 73.4
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 1.9e-32 142.9 94 70.2
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 2.5e-32 142.5 97 66.0
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 2.8e-31 139.0 165 55.2
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 2.9e-28 129.0 72 84.7
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 3.8e-28 128.6 135 53.3
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 4.8e-23 111.7 118 55.1
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 1.0e-20 104.0 90 55.6
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 1.8e-17 93.2 86 54.7
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 6.7e-17 91.3 53 84.9
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 3.3e-16 89.0 51 86.3
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 3.3e-16 89.0 51 86.3
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 3.8e-12 75.5 120 38.3


User provided reference genes

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