Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.8e-84 315.8 159 100.0
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 9.1e-84 313.5 159 99.4
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 2.8e-32 142.5 146 56.8
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.0e-30 136.3 159 47.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.9e-26 122.1 157 46.5
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.8e-23 113.2 124 51.6
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.0e-23 112.1 155 43.2
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 4.0e-23 112.1 141 48.2
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.0e-23 112.1 110 53.6
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.5e-22 110.2 137 44.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 2.0e-22 109.8 128 48.4
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.8e-21 105.5 126 44.4
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.9e-21 105.1 128 46.9
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 6.4e-21 104.8 110 51.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 8.4e-21 104.4 159 42.1
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.4e-20 103.6 122 45.9
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 4.6e-19 98.6 124 48.4
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.0e-19 98.2 119 47.9
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 6.0e-19 98.2 129 48.8
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.0e-18 97.4 159 40.3
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-18 97.4 128 44.5
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 1.0e-18 97.4 144 41.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.3e-18 97.1 113 46.9
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 2.3e-18 96.3 132 41.7
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.9e-18 95.5 103 48.5
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 6.6e-18 94.7 125 40.8
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 6.6e-18 94.7 108 45.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 1.1e-17 94.0 106 49.1
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-17 94.0 125 48.0
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 1.5e-17 93.6 117 50.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.9e-17 93.2 132 40.9
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.5e-17 92.8 126 43.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 2.5e-17 92.8 122 45.9
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 2.5e-17 92.8 126 48.4
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.3e-17 92.4 122 43.4
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.3e-17 92.4 115 46.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 7.3e-17 91.3 122 43.4
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.3e-17 91.3 126 42.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-16 90.1 124 45.2
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 3.6e-16 89.0 115 42.6
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.2e-16 88.2 116 45.7
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-15 87.4 124 43.5
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.8e-15 86.7 130 38.5
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 1.8e-15 86.7 115 44.3
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 5.3e-15 85.1 126 40.5
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.3e-15 85.1 112 44.6
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 6.9e-15 84.7 123 45.5
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 9.0e-15 84.3 113 44.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.0e-15 84.3 108 40.7
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-14 84.0 108 43.5
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.2e-14 84.0 108 43.5
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 1.2e-14 84.0 152 37.5
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 1.2e-14 84.0 160 36.2
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 2.0e-14 83.2 111 44.1
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.0e-14 83.2 106 47.2
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.0e-14 83.2 108 42.6
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 4.4e-14 82.0 108 47.2
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.4e-14 82.0 106 46.2
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 4.4e-14 82.0 106 46.2
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 4.4e-14 82.0 128 35.9
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 5.8e-14 81.6 110 44.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 5.8e-14 81.6 128 35.9
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 7.6e-14 81.3 130 36.9
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.6e-14 81.3 127 37.8
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 9.9e-14 80.9 105 43.8
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.3e-13 80.5 124 37.9
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 1.7e-13 80.1 124 38.7
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 2.9e-13 79.3 128 41.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.9e-13 79.3 114 40.4
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.9e-13 79.3 124 37.1
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.9e-13 79.3 109 44.0
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 3.8e-13 79.0 113 40.7
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.8e-13 79.0 113 41.6
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 8.4e-13 77.8 125 42.4
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 8.4e-13 77.8 122 39.3
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.4e-13 77.8 162 32.7
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 8.4e-13 77.8 142 35.2
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.4e-12 77.0 125 42.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 3.2e-12 75.9 116 39.7
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 3.2e-12 75.9 128 37.5
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 5.4e-12 75.1 135 35.6
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 9.3e-12 74.3 107 42.1
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 9.3e-12 74.3 113 35.4
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.1e-11 73.2 109 44.0
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.1e-11 73.2 114 41.2
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.1e-11 73.2 107 41.1
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 3.5e-11 72.4 114 43.9
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 4.6e-11 72.0 103 38.8
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.0e-10 70.9 115 40.9
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.0e-10 70.9 111 36.0
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.3e-10 69.7 125 40.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 2.3e-10 69.7 106 41.5
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.9e-10 68.9 102 41.2
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 5.1e-10 68.6 102 40.2
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 5.1e-10 68.6 115 40.0
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 6.6e-10 68.2 103 39.8
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.7e-10 67.8 115 39.1
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 8.7e-10 67.8 108 42.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 1.1e-09 67.4 116 39.7
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.9e-09 66.6 128 35.2
SalBow7G1414 Salvia bowleyana HOM05D004992 ORTHO05D006004 3.3e-09 65.9 89 40.4
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 3.3e-09 65.9 98 37.8
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 5.6e-09 65.1 98 36.7
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 5.6e-09 65.1 107 38.3
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 7.3e-09 64.7 110 40.0
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 9.6e-09 64.3 122 37.7
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 9.6e-09 64.3 114 38.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.3e-08 63.9 116 38.8
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 1.3e-08 63.9 116 39.7
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.1e-08 63.2 87 44.8
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.1e-08 63.2 111 37.8
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 2.8e-08 62.8 111 37.8
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.8e-08 62.0 125 36.8
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.8e-08 62.0 113 35.4
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 6.2e-08 61.6 118 39.8
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 8.1e-08 61.2 115 36.5
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.1e-07 60.8 109 35.8
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.4e-07 59.7 114 38.6
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.4e-07 59.7 124 32.3
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.1e-07 59.3 123 35.0
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.0e-07 58.9 111 36.9
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 4.0e-07 58.9 113 34.5
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 4.0e-07 58.9 104 37.5
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 9.0e-07 57.8 122 35.2
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 1.2e-06 57.4 116 32.8
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.2e-06 57.4 119 31.9
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.5e-06 57.0 104 40.4
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.5e-06 57.0 104 40.4
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.5e-06 57.0 102 39.2
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.5e-06 57.0 124 32.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 2.0e-06 56.6 104 35.6
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 7.6e-06 54.7 115 35.7
Medtr5g092085 Medicago truncatula HOM05D004992 ORTHO05D006004 9.9e-06 54.3 110 33.6


User provided reference genes

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