Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.7e-269 931.4 468 100.0
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.3e-243 844.7 509 86.8
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.0e-213 743.8 536 73.7
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 5.2e-212 741.1 537 72.8
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.9e-180 634.0 400 82.8
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 4.3e-174 615.1 536 62.9
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 5.3e-172 608.2 535 63.7
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 6.2e-157 558.1 532 57.1
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 4.0e-156 555.4 529 58.2
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.6e-155 552.7 529 57.1
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.2e-153 545.8 532 57.5
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.6e-152 543.5 536 55.6
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 3.5e-152 542.3 532 57.5
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.6e-152 542.0 533 56.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 4.6e-152 542.0 539 54.7
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.0e-151 540.8 527 57.9
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.3e-151 539.7 467 61.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 3.9e-151 538.9 529 55.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 2.5e-150 536.2 532 56.0
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.6e-149 533.5 535 55.0
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.7e-149 532.3 535 55.1
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.1e-148 530.8 535 54.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 1.1e-148 530.8 533 55.0
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 9.0e-148 527.7 554 53.6
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.0e-147 526.6 529 53.7
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.0e-147 526.6 460 60.4
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.5e-145 519.6 538 53.9
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 7.1e-145 518.1 537 54.4
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.7e-144 516.2 502 56.4
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.5e-144 515.8 536 53.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.0e-143 514.2 520 54.4
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-143 514.2 530 54.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 6.7e-143 511.5 533 54.2
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.1e-142 510.8 497 56.5
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.1e-142 510.8 477 58.5
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.9e-142 510.0 529 54.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 5.7e-142 508.4 489 56.6
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.2e-141 506.5 513 54.0
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.8e-141 506.1 537 53.6
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.7e-141 505.8 529 53.7
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 8.2e-141 504.6 535 51.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.1e-140 504.2 489 56.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.8e-140 503.4 532 52.8
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 2.4e-140 503.1 529 53.1
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 5.3e-140 501.9 531 53.5
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-139 500.7 532 52.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 2.0e-139 500.0 536 50.6
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-138 496.9 532 52.3
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-138 495.7 546 51.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.1e-137 494.2 473 56.9
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 5.5e-137 491.9 426 61.0
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 9.4e-137 491.1 563 49.4
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.6e-136 490.3 479 56.4
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.1e-136 490.0 526 51.0
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-136 488.4 474 55.9
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 7.9e-136 488.0 532 50.4
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 7.9e-136 488.0 426 59.2
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 3.0e-135 486.1 505 53.7
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 3.0e-135 486.1 426 58.7
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 6.7e-135 485.0 551 50.5
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 8.8e-135 484.6 536 49.6
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.3e-134 482.6 501 52.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 6.3e-133 478.4 471 55.4
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 8.2e-133 478.0 534 52.4
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.4e-132 477.2 434 57.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.4e-132 477.2 479 53.9
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.4e-132 476.5 432 57.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 2.4e-132 476.5 486 52.5
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.5e-131 472.2 539 50.3
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.0e-130 471.1 504 51.6
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-129 466.8 454 53.5
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.2e-129 465.7 489 53.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 5.5e-129 465.3 427 58.1
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 9.4e-129 464.5 527 49.3
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.6e-128 462.6 521 49.7
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 6.1e-128 461.8 542 50.0
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 6.7e-127 458.4 535 46.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 4.4e-126 455.7 525 50.1
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 5.7e-126 455.3 495 52.5
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 1.3e-125 454.1 477 52.2
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.3e-125 454.1 493 50.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 2.8e-125 453.0 543 49.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.7e-125 452.6 427 55.3
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 3.5e-123 446.0 426 57.5
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.8e-122 442.6 489 51.1
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.5e-122 441.8 432 54.9
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.1e-121 441.0 630 44.0
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.9e-121 440.3 531 48.8
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 3.6e-120 436.0 489 49.7
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 4.7e-120 435.6 443 53.3
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 6.1e-120 435.3 454 53.5
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.2e-117 426.8 428 51.4
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.1e-116 424.5 421 55.3
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.1e-116 422.9 429 51.7
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 4.1e-116 422.5 532 46.2
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-115 421.0 489 48.9
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 3.5e-115 419.5 495 48.7
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 5.9e-115 418.7 431 52.4
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 6.5e-114 415.2 505 47.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-113 413.7 432 51.6
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.3e-111 406.8 478 47.9
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.4e-110 402.9 429 50.8
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 3.8e-106 389.4 543 46.4
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.5e-102 375.2 482 46.3
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 7.5e-102 375.2 433 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.1e-100 371.3 443 46.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-100 371.3 484 44.8
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 7.7e-99 365.2 489 44.2
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.7e-98 364.0 289 65.1
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.5e-97 360.1 514 41.8
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.5e-97 359.0 333 57.1
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 8.0e-96 355.1 445 47.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.0e-95 354.8 284 62.3
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 6.8e-95 352.1 437 44.9
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.7e-93 346.3 329 55.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.8e-92 344.0 438 44.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.2e-92 343.2 427 45.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.0e-91 340.5 425 47.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 4.1e-84 316.2 395 47.3
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.6e-82 308.9 236 60.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.8e-79 300.8 407 42.0
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.9e-79 298.5 220 61.4
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.9e-76 290.8 334 48.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 8.1e-72 275.4 333 49.2
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.7e-69 267.7 328 48.2
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 4.9e-69 266.2 187 69.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 3.5e-67 260.0 194 66.5
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 7.3e-65 252.3 342 45.0
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-63 248.1 192 64.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.4e-63 248.1 192 64.1
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.8e-63 247.7 192 63.0
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.4e-63 247.3 147 79.6
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 5.2e-63 246.1 338 45.0
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 2.2e-61 240.7 243 56.4
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.9e-61 239.6 147 74.1
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.5e-59 233.4 343 43.1
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.0e-58 231.9 365 41.9
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 2.3e-58 230.7 271 47.6
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 6.6e-58 229.2 457 37.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-53 214.5 146 68.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 3.9e-50 203.4 125 76.0
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.6e-50 202.6 261 46.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.2e-48 196.1 147 65.3
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.3e-42 177.6 118 71.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.4e-41 172.6 130 63.1
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.2e-40 169.5 248 39.1
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-37 160.6 233 41.6
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.5e-36 157.5 538 27.5
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 1.1e-33 148.7 147 51.0
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-33 148.3 107 63.6
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.5e-33 148.3 313 35.8
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-27 128.6 137 48.9
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 3.4e-22 110.5 206 37.9
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-21 107.8 179 36.9
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-15 87.4 112 40.2
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 2.7e-11 74.3 66 59.1
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.8e-10 69.3 83 49.4


User provided reference genes

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